Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

RAP1B

Identity

Hugo RAP1B
Location 12q14

DNA/RNA

 
Description The gene emcompasses 7 codinng exons covering 10779 bp on chromosome 12

Protein

Description Rap1 is a member of the Ras superfamily of monomeric GTPases, closely related to Ras. There are two isoforms, Rap1Aand Rap1B that share 95% identity and are encoded by two different genes. Rap1 proteins share 50% identity with Ras proteins, including the regions involved in GDP/GTP binding (hence Rap1A has very similar biochemical properties to Ras), C-terminal CAAX domain leading to prenylation (geranylgeranylation in the case of Rap1A), and effector region identical to that of Ras proteins causing Ras and Rap1 to share some potential effectors.
Expression ubiquitous ; highest in platelets and neutrophils
Localisation Rap1 is bound to membranes. In many cell types, it is found in a perinuclear compartment overlapping the Golgi. Rap1 proteins (A and B) are phosphorylated near the C-ter by cAMP-dependent protein kinase. This results in translocation of part of the Rap1 pool to the cytosol.
Function The function of Rap1 is still a matter of debate. Its overexpression is able to compete with the activation of Raf-1 by active Ras. Active Rap1B has been shown to activate the B-Raf kinase and the MEK-ERK cascade. In several cellular models, Rap1 has been shown to be involved in the regulation of integrin-mediated cell adhesion.
Homology 98% identical to Rap1A, 60% identical to Rap2 , 50 % to Ras proteins

Mutations

Germinal unknown

Implicated in

Entity no implication in pathologies characterized so far
  

To be noted

see also RAP family

External links

Nomenclature
HugoRAP1B
GDBRAP1B
Entrez_GeneRAP1B  5908  RAP1B, member of RAS oncogene family
Cards
AtlasRAP1BID273
GeneCardsRAP1B
EnsemblRAP1B [Search_View]   ENSG00000127314 [Gene_View]
GenatlasRAP1B
GeneLynxRAP1B
eGenomeRAP1B
euGene5908
Genomic and cartography
GoldenPathRAP1B  -  12q14   chr12:67290919-67340642 +  12q14   [Description]    (hg18-Mar_2006)
EnsemblRAP1B - 12q14 [CytoView]
NCBIMapview
OMIMDisease map [OMIM]
HomoloGeneRAP1B
Gene and transcription
GenbankAA809981 [ ENTREZ ]
GenbankAB062128 [ ENTREZ ]
GenbankAF279894 [ ENTREZ ]
GenbankAF493913 [ ENTREZ ]
GenbankAJ420497 [ ENTREZ ]
RefSeqNM_001010942 [ SRS ]    NM_001010942 [ ENTREZ ]
RefSeqNM_015646 [ SRS ]    NM_015646 [ ENTREZ ]
RefSeqAC_000055 [ SRS ]    AC_000055 [ ENTREZ ]
RefSeqNC_000012 [ SRS ]    NC_000012 [ ENTREZ ]
RefSeqNT_029419 [ SRS ]    NT_029419 [ ENTREZ ]
RefSeqNW_925395 [ SRS ]    NW_925395 [ ENTREZ ]
AceViewRAP1B AceView - NCBI
UnigeneHs.369920 [ SRS ]    Hs.369920 [ NCBI ]     HS369920 [ spliceNest ]
Fast-db10208 (alternative variants)
Protein : pattern, domain, 3D structure
SwissProtP61224 [ SRS]    P61224 [ EXPASY ]     P61224 [ INTERPRO ]
InterproIPR003577 GTPase_Ras [ SRS ]    IPR003577 GTPase_Ras [ EBI ]
InterproIPR013753 Ras [ SRS ]    IPR013753 Ras [ EBI ]
InterproIPR001806 Ras_trnsfrmng [ SRS ]    IPR001806 Ras_trnsfrmng [ EBI ]
InterproIPR005225 Small_GTP_bd [ SRS ]    IPR005225 Small_GTP_bd [ EBI ]
CluSTrP61224
PfamPF00071 Ras [ SRS ]    PF00071 Ras [ Sanger ]    pfam00071 [ NCBI-CDD ]
SmartSM00173 RAS [EMBL]
BlocksP61224
HPRD01546
Protein Interaction databases
DIPP61224
IntActP61224
Polymorphism : SNP, mutations, diseases
OMIM179530    [ map ]   
GENECLINICS179530
SNPRAP1B [dbSNP-NCBI]  
SNPNM_001010942 [SNP-NCI]  
SNPNM_015646 [SNP-NCI]  
SNPRAP1B [GeneSNPs - Utah]  RAP1B] [HGBASE - SRS]
HAPMAPRAP1B [HAPMAP]  
COSMICRAP1B [Somatic mutation (COSMIC-CGP-Sanger)]  
HGMDRAP1B
General knowledge
Family BrowserRAP1B [UCSC Family Browser]
SOURCENM_001010942
SOURCENM_015646
SMDHs.369920
SAGEHs.369920
GOnucleotide binding [Amigo]  nucleotide binding
GOGTP binding [Amigo]  GTP binding
GOintracellular [Amigo]  intracellular
GOcytoplasm [Amigo]  cytoplasm
GOplasma membrane [Amigo]  plasma membrane
GOsmall GTPase mediated signal transduction [Amigo]  small GTPase mediated signal transduction
BIOCARTAEph Kinases and ephrins support platelet aggregation    [Genes]
BIOCARTASignaling of Hepatocyte Growth Factor Receptor    [Genes]
KEGGMAPK signaling pathway
KEGGFocal adhesion
KEGGLeukocyte transendothelial migration
KEGGLong-term potentiation
PubGeneRAP1B
TreeFamRAP1B
CTD5908 [Comparative ToxicoGenomics Database]
Other databases
Probes
ProbeRAP1B Related clones (RZPD - Berlin)
PubMed
PubMed28 Pubmed reference(s) in LocusLink

Bibliography

Rap1 signalling: adhering to new models.
Bos JL, de Rooij J, Reedquist KA
Nature reviews. Molecular cell biology. 2001 ; 2 (5) : 369-377.
PMID 11331911
 
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written05-2001Jean de Gunzburg

Citation

This paper should be referenced as such :
Gunzburg J de . RAP1B. Atlas Genet Cytogenet Oncol Haematol. May 2001 .
URL : http://AtlasGeneticsOncology.org/Genes/RAP1BID273.html

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jul 2 08:26:31 2008


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

j.l.huret@chu-poitiers.fr.