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RAP2B RAP2B, member of RAS oncogene family

Identity

HGNC (Hugo) RAP2B
Location 3q24
Location_base_pair Starts at 154362719 and ends at 154368953 bp from pter ( according to hg18-Mar_2006)  [Mapping]

DNA/RNA

 
Description The gene contains 1 coding exon only covering 644 bp

Protein

Description Rap2 is a member of the Ras superfamily of monomeric GTPases, closely related to Ras. There are twoisoforms, Rap2A and Rap2B that share 90% identity and are encoded by two different genes. Rap2 proteinsshare 50% identity with Ras proteins, including the regions involved in GDP/GTP binding (hence Rap2A hasvery similar biochemical properties to Ras), C-terminal CAAX domain leading to prenylation (farnesylationfor Rap2A and geranylgeranylation in the case of Rap2B) and palmitoylation. The effector region of Rap2 isvery similar to that of Ras proteins, yet Ras and Rap2 do share seem to share effectors.
Expression ubiquitous ; higher in brain and hemopoietic tissues (especially rich in platelets and meutrophils)
Localisation plasma and/or intracellular membranes (endoplasmic reticulum)
Function unknown
Homology 90% identical to Rap2A, 60% identical to Rap1, 50 % to Ras proteins

Mutations

Germinal unknown

Implicated in

Entity no implication in pathologies characterized so far
  

To be noted

see also RAP family

External links

Nomenclature
HGNC (Hugo)RAP2B   9862
Entrez_Gene (NCBI)RAP2B  5912  RAP2B, member of RAS oncogene family
Cards
AtlasRAP2BID275
GeneCards (Weizmann)RAP2B
Ensembl (Hinxton)ENSG00000181467 [Gene_View]  RAP2B [Vega]
AceView (NCBI)RAP2B
Genatlas (Paris)RAP2B
euGene (Indiana)5912
SOURCE (Stanford)NM_002886
Gene Expression (Array Express) ENSG00000181467
Genomic and cartography
GoldenPath (UCSC)RAP2B  -  3q24   chr3:154362719-154368953 +  3q25.2   [Description]    (hg18-Mar_2006)
EnsemblRAP2B - 3q25.2 [CytoView]
Mapping of homologs : NCBIRAP2B [Mapview]
OMIM179541   
Gene and transcription
Gene : Genbank (Entrez)AF493915 AL713766 BC012362 BF965860 DQ891702
Reference sequence (RefSeq transcript) :SRSNM_002886
Reference transcript : EntrezNM_002886
RefSeq genomic : SRSAC_000046 AC_000135 NC_000003 NT_005612 NW_001838884 NW_921807
RefSeq genomic : EntrezAC_000046 AC_000135 NC_000003 NT_005612 NW_001838884 NW_921807
Consensus coding sequences : CCDS NCBIRAP2B
Cluster EST : UnigeneHs.98643 [ SRS ] Hs.98643 [ NCBI ]
Alternative Splicing : Fast-db (Paris)14111
Protein : pattern, domain, 3D structure
Protein : UniProt/SwissProtP61225 (SRS) P61225 (Expasy) P61225 (Uniprot)
With graphics : InterProP61225
Splice isoforms : VarSplice FASTAP61225(VarSplice FASTA)
Domaine pattern : Prosite (SRS)RAS (PS51421)   
Domain pattern : Prosite (Expaxy)RAS (PS51421)   
Domains : Interpro (SRS)GTPase_Ras    Ras    Ras_GTPase    Ras_small_GTPase    Small_GTP_bd   
Domains : Interpro (EBI)GTPase_Ras    Ras    Ras_GTPase    Ras_small_GTPase    Small_GTP_bd   
Related proteins : CluSTrP61225
Domain families : Pfam SRSRas (PF00071)   
Domain families : Pfam SangerRas (PF00071)   
Domain families : Pfam NCBIpfam00071   
Domain families : Smart EMBLRAS (SM00173)  
Blocks (Seattle)P61225
Crystal structure of protein : PDB SRS
Crystal structure of protein : PDBSum
Crystal structure of protein : IMB
Crystal structure of protein : PDB RSDB
HPRD01548
Protein Interaction databases
DIP (DOE-UCLA)P61225
IntAct (EBI)P61225
Polymorphism : SNP, mutations, diseases
Single Nucleotide Polymorphism (SNP) : dbSNP NCBIRAP2B
SNP : GeneSNP UtahRAP2B
SNP : HGBaseRAP2B
Genetic variants : HAPMAPRAP2B
Somatic Mutations in Cancer : COSMICRAP2B 
Mutations and Diseases : HGMDRAP2B
Hereditary diseases : OMIM179541   
Hereditary diseases : GENETests179541   
Diseases : Genetic AssociationRAP2B
General knowledge
Homologs : HomoloGeneRAP2B
Homology/Alignments : Family Browser UCSCRAP2B
Phylogenetic Trees/Animal Genes : TreeFamRAP2B
Chemical/Protein Interactions : CTD5912
Keywords Ontology : AmiGOnucleotide binding  GTPase activity  GTP binding  intracellular  plasma membrane  signal transduction  small GTPase mediated signal transduction  protein domain specific binding  
Keywords Ontology : EGO-EBInucleotide binding  GTPase activity  GTP binding  intracellular  plasma membrane  signal transduction  small GTPase mediated signal transduction  protein domain specific binding  
Pathways : BIOCARTAPhospholipase C-epsilon pathway [Genes]   
Pathways : KEGG
Other databases
Probes
Probes : ImagenesRAP2B Related clones (RZPD - Berlin)
Literature
PubMed18 Pubmed reference(s) in Entrez
PubGeneRAP2B

Bibliography

Rap2 as a slowly responding molecular switch in the Rap1 signaling cascade.
Ohba Y, Mochizuki N, Matsuo K, Yamashita S, Nakaya M, Hashimoto Y, Hamaguchi M, Kurata T, Nagashima K, Matsuda M
Molecular and cellular biology. 2000 ; 20 (16) : 6074-6083.
PMID 10913189
 
Rap2 as a slowly responding molecular switch in the Rap1 signaling cascade.
Ohba Y, Mochizuki N, Matsuo K, Yamashita S, Nakaya M, Hashimoto Y, Hamaguchi M, Kurata T, Nagashima K, Matsuda M
Molecular and cellular biology. 2000 ; 20 (16) : 6074-6083.
PMID 10913189
 
Rap2 as a slowly responding molecular switch in the Rap1 signaling cascade.
Ohba Y, Mochizuki N, Matsuo K, Yamashita S, Nakaya M, Hashimoto Y, Hamaguchi M, Kurata T, Nagashima K, Matsuda M
Molecular and cellular biology. 2000 ; 20 (16) : 6074-6083.
PMID 10913189
 
Rap2 as a slowly responding molecular switch in the Rap1 signaling cascade.
Ohba Y, Mochizuki N, Matsuo K, Yamashita S, Nakaya M, Hashimoto Y, Hamaguchi M, Kurata T, Nagashima K, Matsuda M
Molecular and cellular biology. 2000 ; 20 (16) : 6074-6083.
PMID 10913189
 
Rap2 as a slowly responding molecular switch in the Rap1 signaling cascade.
Ohba Y, Mochizuki N, Matsuo K, Yamashita S, Nakaya M, Hashimoto Y, Hamaguchi M, Kurata T, Nagashima K, Matsuda M
Molecular and cellular biology. 2000 ; 20 (16) : 6074-6083.
PMID 10913189
 
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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Contributor(s)

Written05-2001Jean de Gunzburg

Citation

This paper should be referenced as such :
Gunzburg J de . RAP2B RAP2B, member of RAS oncogene family. Atlas Genet Cytogenet Oncol Haematol. May 2001 .
URL : http://AtlasGeneticsOncology.org/Genes/RAP2BID275.html

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Feb 27 10:46:57 CET 2010

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