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RAP2B (RAP2B, member of RAS oncogene family)

Identity

HGNC (Hugo) RAP2B
LocusID (NCBI) 5912
Location 3q24
Location_base_pair Starts at 152880029 and ends at 152886263 bp from pter ( according to hg19-Feb_2009)  [Mapping]
 
  Probe(s) - Courtesy Mariano Rocchi, Resources for Molecular Cytogenetics

DNA/RNA

 
Description The gene contains 1 coding exon only covering 644 bp

Protein

Description Rap2 is a member of the Ras superfamily of monomeric GTPases, closely related to Ras. There are twoisoforms, Rap2A and Rap2B that share 90% identity and are encoded by two different genes. Rap2 proteinsshare 50% identity with Ras proteins, including the regions involved in GDP/GTP binding (hence Rap2A hasvery similar biochemical properties to Ras), C-terminal CAAX domain leading to prenylation (farnesylationfor Rap2A and geranylgeranylation in the case of Rap2B) and palmitoylation. The effector region of Rap2 isvery similar to that of Ras proteins, yet Ras and Rap2 do share seem to share effectors.
Expression ubiquitous ; higher in brain and hemopoietic tissues (especially rich in platelets and meutrophils)
Localisation plasma and/or intracellular membranes (endoplasmic reticulum)
Function unknown
Homology 90% identical to Rap2A, 60% identical to Rap1, 50 % to Ras proteins

Mutations

Germinal unknown

Implicated in

Entity no implication in pathologies characterized so far
  

To be noted

see also RAP family

External links

Nomenclature
HGNC (Hugo)RAP2B   9862
Entrez_Gene (NCBI)RAP2B  5912  RAP2B, member of RAS oncogene family
Cards
AtlasRAP2BID275
GeneCards (Weizmann)RAP2B
Ensembl (Hinxton)ENSG00000181467 [Gene_View]  chr3:152880029-152886263 [Contig_View]  RAP2B [Vega]
AceView (NCBI)RAP2B
Genatlas (Paris)RAP2B
euGene (Indiana)5912
SOURCE (Stanford)NM_002886
Genomic and cartography
GoldenPath (UCSC)RAP2B  -  3q24   chr3:152880029-152886263 +  3q25.2   [Description]    (hg19-Feb_2009)
EnsemblRAP2B - 3q25.2 [CytoView]
Mapping of homologs : NCBIRAP2B [Mapview]
OMIM179541   
Gene and transcription
Genbank (Entrez)AF493915 AL713766 BC012362 BF965860 DQ891702
RefSeq transcript (SRS)NM_002886
RefSeq transcript (Entrez)NM_002886
RefSeq genomic (SRS)AC_000135 NC_000003 NT_005612 NW_001838884
RefSeq genomic (Entrez)AC_000135 NC_000003 NT_005612 NW_001838884
Consensus coding sequences : CCDS (NCBI)RAP2B
Cluster EST : UnigeneHs.98643 [ SRS ] Hs.98643 [ NCBI ]
Alternative Splicing : Fast-db (Paris)14111
Alternative Splicing GalleryENSG00000181467
Gene ExpressionRAP2B [ NCBI-GEO ]   RAP2B [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP61225 (SRS) P61225 (Uniprot)
With graphics : InterProP61225
Splice isoforms : SwissVarP61225(Swissvar)
Domaine pattern : Prosite (SRS)RAS (PS51421)   
Domaine pattern : Prosite (Expaxy)RAS (PS51421)   
Domains : Interpro (SRS)Small_GTP-bd_dom    Small_GTPase    Small_GTPase_Ras   
Domains : Interpro (EBI)Small_GTP-bd_dom    Small_GTPase    Small_GTPase_Ras   
Related proteins : CluSTrP61225
Domain families : Pfam (SRS)Ras (PF00071)   
Domain families : Pfam (Sanger)Ras (PF00071)   
Domain families : Pfam (NCBI)pfam00071   
Domain families : Smart (EMBL)RAS (SM00173)  
Blocks (Seattle)P61225
Human Protein AtlasENSG00000181467
HPRD01548
IPIIPI00018364   
dbDEPCIPI00018364   
Protein Interaction databases
DIP (DOE-UCLA)P61225
IntAct (EBI)P61225
FunCoupENSG00000181467
REACTOMERAP2B
BioGRIDRAP2B
InParanoidP61225
Interologous Interaction database P61225
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)RAP2B
SNP (GeneSNP Utah)RAP2B
SNP : HGBaseRAP2B
Genetic variants : HAPMAPRAP2B
Somatic Mutations in Cancer : COSMICRAP2B 
CONAN: Copy Number AnalysisRAP2B 
Mutations and Diseases : HGMDRAP2B
OMIM179541   
GENETests179541   
Disease Genetic AssociationRAP2B
Huge Navigator RAP2B [HugePedia]  RAP2B [HugeCancerGEM]
Genomic VariantsRAP2B
snp3D : Map Gene to Disease5912
General knowledge
Homologs : HomoloGeneRAP2B
Homology/Alignments : Family Browser (UCSC)RAP2B
Phylogenetic Trees/Animal Genes : TreeFamRAP2B
Chemical/Protein Interactions : CTD5912
Chemical/Pharm GKB GenePA34223
Clinical trialRAP2B
Cancer Resource (Charite)ENSG00000181467
Ontology : AmiGOnucleotide binding  GTPase activity  GTP binding  cytosol  signal transduction  small GTPase mediated signal transduction  membrane  protein domain specific binding  negative regulation of cell migration  positive regulation of protein autophosphorylation  Rap protein signal transduction  recycling endosome membrane  regulation of protein tyrosine kinase activity  
Ontology : EGO-EBInucleotide binding  GTPase activity  GTP binding  cytosol  signal transduction  small GTPase mediated signal transduction  membrane  protein domain specific binding  negative regulation of cell migration  positive regulation of protein autophosphorylation  Rap protein signal transduction  recycling endosome membrane  regulation of protein tyrosine kinase activity  
Pathways : BIOCARTAPhospholipase C-epsilon pathway [Genes]   
Other databases
Probes
Probes : ImagenesRAP2B Related clones (RZPD - Berlin)
Litterature
PubMed25 Pubmed reference(s) in Entrez
PubGeneRAP2B
iHOPRAP2B

Bibliography

Rap2 as a slowly responding molecular switch in the Rap1 signaling cascade.
Ohba Y, Mochizuki N, Matsuo K, Yamashita S, Nakaya M, Hashimoto Y, Hamaguchi M, Kurata T, Nagashima K, Matsuda M
Molecular and cellular biology. 2000 ; 20 (16) : 6074-6083.
PMID 10913189
 
Rap2 as a slowly responding molecular switch in the Rap1 signaling cascade.
Ohba Y, Mochizuki N, Matsuo K, Yamashita S, Nakaya M, Hashimoto Y, Hamaguchi M, Kurata T, Nagashima K, Matsuda M
Molecular and cellular biology. 2000 ; 20 (16) : 6074-6083.
PMID 10913189
 
Rap2 as a slowly responding molecular switch in the Rap1 signaling cascade.
Ohba Y, Mochizuki N, Matsuo K, Yamashita S, Nakaya M, Hashimoto Y, Hamaguchi M, Kurata T, Nagashima K, Matsuda M
Molecular and cellular biology. 2000 ; 20 (16) : 6074-6083.
PMID 10913189
 
Rap2 as a slowly responding molecular switch in the Rap1 signaling cascade.
Ohba Y, Mochizuki N, Matsuo K, Yamashita S, Nakaya M, Hashimoto Y, Hamaguchi M, Kurata T, Nagashima K, Matsuda M
Molecular and cellular biology. 2000 ; 20 (16) : 6074-6083.
PMID 10913189
 
Rap2 as a slowly responding molecular switch in the Rap1 signaling cascade.
Ohba Y, Mochizuki N, Matsuo K, Yamashita S, Nakaya M, Hashimoto Y, Hamaguchi M, Kurata T, Nagashima K, Matsuda M
Molecular and cellular biology. 2000 ; 20 (16) : 6074-6083.
PMID 10913189
 
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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Contributor(s)

Written05-2001Jean de Gunzburg

Citation

This paper should be referenced as such :
Gunzburg J de . RAP2B (RAP2B, member of RAS oncogene family). Atlas Genet Cytogenet Oncol Haematol. May 2001 .
URL : http://AtlasGeneticsOncology.org/Genes/RAP2BID275.html

This paper is referenced by INIST as such :
http://documents.irevues.inist.fr/bitstream/2042/37751/1/05-2001-RAP2BID275.pdf   [ Bibliographic record ]

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indexed on : Sat Apr 28 14:58:21 CEST 2012

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