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RECQL RecQ protein-like (DNA helicase Q1-like)

Identity

HGNC (Hugo) RECQL
Location 12p12-p11
Location_base_pair Starts at 21513112 and ends at 21545870 bp from pter ( according to hg18-Mar_2006)  [Mapping]

DNA/RNA

Transcription Two alternatively spliced transcripts, which encode the same isoform but differ in their 5' and 3' UTRs, have been described. Coding region: 1977 bp. Three RNA bands of 4.0, 3.3 and 2.2 kb were detected in HeLa cells by Northern blotting.

Protein

Description 659 amino acids; contains one ATP binding site and one DexH box. Two other putative isoforms resulting from an alternative mRNA splicing may exist.
Localisation Nuclear
Function 3'-5' DNA helicase. Replication Protein A stimulates its helicase activity.
Homology Homologous to RecQ helicases, a subfamily of DExH box-containing DNA and RNA helicases. In particular, similarities with the four known human members in the RecQ subfamily, human RecQL4, human RecQL5, human BLM, the product of the Bloom syndrome gene and human WRN, the product of the Werner syndrome gene.

Mutations

Note Not described, and correlation with genetic disorder, if any, is (yet) unknown.

External links

Nomenclature
HGNC (Hugo)RECQL   9948
Entrez_Gene (NCBI)RECQL  5965  RecQ protein-like (DNA helicase Q1-like)
Cards
AtlasRECQLID283
GeneCards (Weizmann)RECQL
Ensembl (Hinxton)ENSG00000004700 [Gene_View]  RECQL [Vega]
AceView (NCBI)RECQL
Genatlas (Paris)RECQL
euGene (Indiana)5965
SOURCE (Stanford)NM_002907 NM_032941
Gene Expression (Array Express) ENSG00000004700
Genomic and cartography
GoldenPath (UCSC)RECQL  -     chr12:21513112-21545870 -  12p12   [Description]    (hg18-Mar_2006)
EnsemblRECQL - 12p12 [CytoView]
Mapping of homologs : NCBIRECQL [Mapview]
OMIM600537   
Gene and transcription
Gene : Genbank (Entrez)AK291627 AV718094 AY157499 BC001052 BE794392
Reference sequence (RefSeq transcript) :SRSNM_002907 NM_032941
Reference transcript : EntrezNM_002907 NM_032941
RefSeq genomic : SRSAC_000055 AC_000144 NC_000012 NT_009714 NW_001838052 NW_925328
RefSeq genomic : EntrezAC_000055 AC_000144 NC_000012 NT_009714 NW_001838052 NW_925328
Consensus coding sequences : CCDS NCBIRECQL
Cluster EST : UnigeneHs.235069 [ SRS ] Hs.235069 [ NCBI ]
Alternative Splicing : Fast-db (Paris)3751
Protein : pattern, domain, 3D structure
Protein : UniProt/SwissProtP46063 (SRS) P46063 (Expasy) P46063 (Uniprot)
With graphics : InterProP46063
Splice isoforms : VarSplice FASTAP46063(VarSplice FASTA)
Domaine pattern : Prosite (SRS)HELICASE_ATP_BIND_1 (PS51192)    HELICASE_CTER (PS51194)   
Domain pattern : Prosite (Expaxy)HELICASE_ATP_BIND_1 (PS51192)    HELICASE_CTER (PS51194)   
Domains : Interpro (SRS)DEAD-like_N    DNA/RNA_helicase_C    DNA/RNA_helicase_DEAD/DEAH_N    DNA_helicase_ATP-dep_RecQ    DNA_helicase_ATP-dep_RecQ_N    Helicase_SF1/SF2_ATP-bd    RQC_domain   
Domains : Interpro (EBI)DEAD-like_N    DNA/RNA_helicase_C    DNA/RNA_helicase_DEAD/DEAH_N    DNA_helicase_ATP-dep_RecQ    DNA_helicase_ATP-dep_RecQ_N    Helicase_SF1/SF2_ATP-bd    RQC_domain   
Related proteins : CluSTrP46063
Domain families : Pfam SRSDEAD (PF00270)    Helicase_C (PF00271)    RQC (PF09382)   
Domain families : Pfam SangerDEAD (PF00270)    Helicase_C (PF00271)    RQC (PF09382)   
Domain families : Pfam NCBIpfam00270    pfam00271    pfam09382   
Domain families : Smart EMBLDEXDc (SM00487)  HELICc (SM00490)  
Blocks (Seattle)P46063
Crystal structure of protein : PDB SRS2V1X   
Crystal structure of protein : PDBSum2V1X   
Crystal structure of protein : IMB2V1X   
Crystal structure of protein : PDB RSDB2V1X   
HPRD02762
Protein Interaction databases
DIP (DOE-UCLA)P46063
IntAct (EBI)P46063
Polymorphism : SNP, mutations, diseases
Single Nucleotide Polymorphism (SNP) : dbSNP NCBIRECQL
SNP : GeneSNP UtahRECQL
SNP : HGBaseRECQL
Genetic variants : HAPMAPRECQL
Somatic Mutations in Cancer : COSMICRECQL 
Mutations and Diseases : HGMDRECQL
Hereditary diseases : OMIM600537   
Hereditary diseases : GENETests600537   
Diseases : Genetic AssociationRECQL
General knowledge
Homologs : HomoloGeneRECQL
Homology/Alignments : Family Browser UCSCRECQL
Phylogenetic Trees/Animal Genes : TreeFamRECQL
Catalytic activity : Enzyme3.6.1.- [ Enzyme-Expasy ]   3.6.1.- [ Enzyme-SRS ]   3.6.1.- [ IntEnz-EBI ]   3.6.1.- [ BRENDA ]   3.6.1.- [ KEGG ]   
Chemical/Protein Interactions : CTD5965
Keywords Ontology : AmiGOnucleotide binding  DNA strand renaturation  DNA strand annealing activity  DNA binding  protein binding  ATP binding  nucleus  DNA replication  DNA repair  DNA recombination  hydrolase activity  ATP-dependent 3'-5' DNA helicase activity  
Keywords Ontology : EGO-EBInucleotide binding  DNA strand renaturation  DNA strand annealing activity  DNA binding  protein binding  ATP binding  nucleus  DNA replication  DNA repair  DNA recombination  hydrolase activity  ATP-dependent 3'-5' DNA helicase activity  
Pathways : BIOCARTA
Pathways : KEGG
Other databases
Probes
Probes : ImagenesRECQL Related clones (RZPD - Berlin)
Literature
PubMed31 Pubmed reference(s) in Entrez
PubGeneRECQL

Bibliography

Cloning and characterization of RECQL, a potential human homologue of the Escherichia coli DNA helicase RecQ.
Puranam KL, Blackshear PJ
The Journal of biological chemistry. 1994 ; 269 (47) : 29838-29845.
PMID 7961977
 
Molecular cloning of cDNA encoding human DNA helicase Q1 which has homology to Escherichia coli Rec Q helicase and localization of the gene at chromosome 12p12.
Seki M, Miyazawa H, Tada S, Yanagisawa J, Yamaoka T, Hoshino S, Ozawa K, Eki T, Nogami M, Okumura K
Nucleic acids research. 1994 ; 22 (22) : 4566-4573.
PMID 7527136
 
Chromosomal localization of the gene encoding the human DNA helicase RECQL and its mouse homologue.
Puranam KL, Kennington E, Sait SN, Shows TB, Rochelle JM, Seldin MF, Blackshear PJ
Genomics. 1995 ; 26 (3) : 595-598.
PMID 7607686
 
Molecular cloning of a splicing variant of human RECQL helicase.
Zhang AH, Xi X
Biochemical and biophysical research communications. 2002 ; 298 (5) : 789-792.
PMID 12419324
 
Characterization of the DNA-unwinding activity of human RECQ1, a helicase specifically stimulated by human replication protein A.
Cui S, Klima R, Ochem A, Arosio D, Falaschi A, Vindigni A
The Journal of biological chemistry. 2003 ; 278 (3) : 1424-1432.
PMID 12419808
 
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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Contributor(s)

Written01-2003Mounira Amor-Guéret

Citation

This paper should be referenced as such :
Amor-Guéret M . RECQL RecQ protein-like (DNA helicase Q1-like). Atlas Genet Cytogenet Oncol Haematol. January 2003 .
URL : http://AtlasGeneticsOncology.org/Genes/RECQLID283.html

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indexed on : Sat Feb 27 10:48:16 CET 2010

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