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RELA v-rel reticuloendotheliosis viral oncogene homolog A (avian)

Identity

Other namesNF-kB3
NF-kB p65
HGNC (Hugo) RELA
Location 11q12-q13
Location_base_pair Starts at 65177644 and ends at 65187019 bp from pter ( according to hg18-Mar_2006)  [Mapping]
Note see also, in the Deep Insight section: Upstream Signal Transduction of NF-kB Activation

DNA/RNA

Description The gene encoding human RelA has 10 exons spanning 8.1 kb. The shorter variants of RelA (p65d) can be generated by alternative splicing of intron 1, 6, or 7. The p65d1 lacks codons for amino acids 222 to 231 and p65d2 lacks codons for amino acids 13 to 25 of the conserved Rel homology domain. An additional alternative splicing form of p65, p65d3 has been identified in a non-small-cell lung carcinoma cell line that lacks codons for amino acids 187 to 293 of the Rel homology domain.

Protein

Description The relA gene encodes a protein composed 551 amino acids with an approximately molecular weight of 65 kDa. The N-terminal region of RelA contains a Rel homology domain (RHD) followed by a nuclear localization signal. The C-terminal region of RelA contains a putative leucine zipper domain and a transactivation domain that is important for the NF-kB-mediated gene transactivation. A number of protein kinases can phosphorylate RelA and consequently potentiate the transcriptional activity of NF-kB complexes. These kinases include IKKb, PKA, and possibly GSK3 and MAP kinase p38. The phosphorylation of the transactivation domain of RelA was considered as an important event for the recruitment and/or interaction with co-factors and general transcriptional machinery subunits such as p300 and TFIIB.
Expression wide.
Localisation cytosol, nuclei after activation.
Function regulation of the genes involved in cell-to-cell interaction, intercellular communication, cell recruitment or transmigration, amplification or spreading of primary pathogenic signals, cell apoptosis, and initiation or acceleration of tumorigenesis. The p50/RelA complex is the most abundant NF-kB complex in all type tissues or cells. Interaction with: members of IkB family and Rel family; GR; HDAC3; CREB; p300; Sp1, Egr1; AES; TFIIB.

Implicated in

Entity cancer, autoimmune arthritis, glomerulonephritis, asthma, inflammatory bowel disease, septic shock, lung fibrosis, HTLV-1 infection, and AIDS.
Oncogenesis Chromosomal rearrangement or point mutation of relA gene has been implicated infrequently in human lymphoid tumors. A t(11;14)(q14;q32?) chromosomal translocation was described in 4 cases of lymphoproliferative disorders (LPD), which possibly involved p65 gene rearrangement. Gene amplification or increased expression of relA has also been noted in some cases of squamous carcinomas of head and neck, and in adenocarcinomas of breast and stomach.
  

External links

Nomenclature
HGNC (Hugo)RELA   9955
Entrez_Gene (NCBI)RELA  5970  v-rel reticuloendotheliosis viral oncogene homolog A (avian)
Cards
AtlasRELAID325
GeneCards (Weizmann)RELA
Ensembl (Hinxton)ENSG00000173039 [Gene_View]  RELA [Vega]
AceView (NCBI)RELA
Genatlas (Paris)RELA
euGene (Indiana)5970
SOURCE (Stanford)NM_001145138 NM_021975
Gene Expression (Array Express) ENSG00000173039
Genomic and cartography
GoldenPath (UCSC)RELA  -     chr11:65177644-65187019 -  11q13   [Description]    (hg18-Mar_2006)
EnsemblRELA - 11q13 [CytoView]
Mapping of homologs : NCBIRELA [Mapview]
OMIM164014   
Gene and transcription
Gene : Genbank (Entrez)AK303262 AK308020 AK308478 BC011603 BC014095
Reference sequence (RefSeq transcript) :SRSNM_001145138 NM_021975
Reference transcript : EntrezNM_001145138 NM_021975
RefSeq genomic : SRSAC_000054 AC_000143 NC_000011 NT_167190 NW_001838025 NW_925106
RefSeq genomic : EntrezAC_000054 AC_000143 NC_000011 NT_167190 NW_001838025 NW_925106
Consensus coding sequences : CCDS NCBIRELA
Cluster EST : UnigeneHs.502875 [ SRS ] Hs.502875 [ NCBI ]
Alternative Splicing : Fast-db (Paris)9906
Protein : pattern, domain, 3D structure
Protein : UniProt/SwissProtQ04206 (SRS) Q04206 (Expasy) Q04206 (Uniprot)
With graphics : InterProQ04206
Splice isoforms : VarSplice FASTAQ04206(VarSplice FASTA)
Domaine pattern : Prosite (SRS)REL_1 (PS01204)    REL_2 (PS50254)   
Domain pattern : Prosite (Expaxy)REL_1 (PS01204)    REL_2 (PS50254)   
Domains : Interpro (SRS)Ig-like_fold    Ig_E-set    IPT_TIG_rcpt    NF_Rel_dor    p53-like_TF_DNA-bd    RHD   
Domains : Interpro (EBI)Ig-like_fold    Ig_E-set    IPT_TIG_rcpt    NF_Rel_dor    p53-like_TF_DNA-bd    RHD   
Related proteins : CluSTrQ04206
Domain families : Pfam SRSRHD (PF00554)   
Domain families : Pfam SangerRHD (PF00554)   
Domain families : Pfam NCBIpfam00554   
Domain families : Smart EMBLIPT (SM00429)  
Blocks (Seattle)Q04206
Crystal structure of protein : PDB SRS1NFI    2O61    3GUT   
Crystal structure of protein : PDBSum1NFI    2O61    3GUT   
Crystal structure of protein : IMB1NFI    2O61    3GUT   
Crystal structure of protein : PDB RSDB1NFI    2O61    3GUT   
HPRD01241
Protein Interaction databases
DIP (DOE-UCLA)Q04206
IntAct (EBI)Q04206
Polymorphism : SNP, mutations, diseases
Single Nucleotide Polymorphism (SNP) : dbSNP NCBIRELA
SNP : GeneSNP UtahRELA
SNP : HGBaseRELA
Genetic variants : HAPMAPRELA
Somatic Mutations in Cancer : COSMICRELA 
Mutations and Diseases : HGMDRELA
Hereditary diseases : OMIM164014   
Hereditary diseases : GENETests164014   
Diseases : Genetic AssociationRELA
General knowledge
Homologs : HomoloGeneRELA
Homology/Alignments : Family Browser UCSCRELA
Phylogenetic Trees/Animal Genes : TreeFamRELA
Chemical/Protein Interactions : CTD5970
Keywords Ontology : AmiGOliver development  hair follicle development  RNA polymerase II transcription factor activity, enhancer binding  nucleus  nucleoplasm  transcription factor complex  cytoplasm  cytosol  anti-apoptosis  anti-apoptosis  inflammatory response  cellular defense response  aging  positive regulation of cell proliferation  response to mechanical stimulus  organ morphogenesis  response to inorganic substance  response to UV-B  positive regulation of Schwann cell differentiation  response to organic cyclic substance  cytokine-mediated signaling pathway  protein kinase binding  membrane protein intracellular domain proteolysis  positive regulation of chondrocyte differentiation  protein complex binding  response to lipopolysaccharide  response to progesterone stimulus  response to insulin stimulus  response to cobalamin  transcription activator binding  negative regulation of protein catabolic process  phosphate binding  response to drug  response to hydrogen peroxide  identical protein binding  identical protein binding  positive regulation of I-kappaB kinase/NF-kappaB cascade  response to amino acid stimulus  response to morphine  sequence-specific DNA binding  interspecies interaction between organisms  positive regulation of interleukin-12 biosynthetic process  positive regulation of transcription from RNA polymerase II promoter  negative regulation of insulin receptor signaling pathway  protein N-terminus binding  NF-kappaB binding  positive regulation of NF-kappaB transcription factor activity  response to cAMP  defense response to virus  nucleotide-binding oligomerization domain containing 2 signaling pathway  transcription repressor binding  response to interleukin-1  
Keywords Ontology : EGO-EBIliver development  hair follicle development  RNA polymerase II transcription factor activity, enhancer binding  nucleus  nucleoplasm  transcription factor complex  cytoplasm  cytosol  anti-apoptosis  anti-apoptosis  inflammatory response  cellular defense response  aging  positive regulation of cell proliferation  response to mechanical stimulus  organ morphogenesis  response to inorganic substance  response to UV-B  positive regulation of Schwann cell differentiation  response to organic cyclic substance  cytokine-mediated signaling pathway  protein kinase binding  membrane protein intracellular domain proteolysis  positive regulation of chondrocyte differentiation  protein complex binding  response to lipopolysaccharide  response to progesterone stimulus  response to insulin stimulus  response to cobalamin  transcription activator binding  negative regulation of protein catabolic process  phosphate binding  response to drug  response to hydrogen peroxide  identical protein binding  identical protein binding  positive regulation of I-kappaB kinase/NF-kappaB cascade  response to amino acid stimulus  response to morphine  sequence-specific DNA binding  interspecies interaction between organisms  positive regulation of interleukin-12 biosynthetic process  positive regulation of transcription from RNA polymerase II promoter  negative regulation of insulin receptor signaling pathway  protein N-terminus binding  NF-kappaB binding  positive regulation of NF-kappaB transcription factor activity  response to cAMP  defense response to virus  nucleotide-binding oligomerization domain containing 2 signaling pathway  transcription repressor binding  response to interleukin-1  
Pathways : BIOCARTAAcetylation and Deacetylation of RelA in The Nucleus [Genes]    Influence of Ras and Rho proteins on G1 to S Transition [Genes]    Erythropoietin mediated neuroprotection through NF-kB [Genes]    NF-kB Signaling Pathway [Genes]    NFkB activation by Nontypeable Hemophilus influenzae [Genes]    Mechanism of Gene Regulation by Peroxisome Proliferators via PPARa(alpha) [Genes]   
Pathways : KEGGApoptosisToll-like receptor signaling pathwayAdipocytokine signaling pathwayEpithelial cell signaling in Helicobacter pylori infection
Other databases
Probes
Probes : ImagenesRELA Related clones (RZPD - Berlin)
Literature
PubMed493 Pubmed reference(s) in Entrez
PubGeneRELA

Bibliography

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PMID 10602468
 
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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Contributor(s)

Written01-2002Fei Chen

Citation

This paper should be referenced as such :
Chen F . RELA v-rel reticuloendotheliosis viral oncogene homolog A (avian). Atlas Genet Cytogenet Oncol Haematol. January 2002 .
URL : http://AtlasGeneticsOncology.org/Genes/RELAID325.html

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indexed on : Sat Feb 27 10:50:57 CET 2010

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