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RELB

Identity

Other namesI-Rel
HGNC (Hugo) RELB
Location 19q13.32
Location_base_pair Starts at 50196552 and ends at 50233292 bp from pter ( according to hg18-Mar_2006)  [Mapping]
Note see also, in the Deep Insight section: Upstream Signal Transduction of NF-kB Activation

DNA/RNA

Description The gene encoding human RelB has 11 exons spanning ~ 37 kb. Analysis of the 5'-flanking region of human relb gene indicates that RelB transcription is dependent on a TATA-less promoter containing two kB sites. Thus, while relA is constitutively expressed, the expression of both rel and relb is in an inducible fashion and dependent on NF-kB.

Protein

Description The human relb gene encodes a protein composed 579 amino acids with an approximately molecular weight of 66 kDa. Although structurally similar with other Rel family proteins containing RHD, NLS and TA domain, RelB contains an additional 121 amino acid region located at the N-terminus of RHD. Original study indicated that RelB failed to associate with RelA(p65) and to interact with DNA. That is the reason why it was named as inhibitive-Rel (I-Rel). In contrast, later studies demonstrated that RelB was able to form a heterodimer with NF-kB p50 or p52 and induce the transcription of target constructs or genes. No DNA binding activity has been suggested for the homodimeric complex of RelB, which may be possibly due to the N-terminal 121 amino acid domain that interfered with the DNA binding of RHD.
Expression wide.
Localisation cytosol, nuclei after activation.
Function regulation of the genes involved in cell-to-cell interaction, intercellular communication, cell recruitment or transmigration, amplification or spreading of primary pathogenic signals, cell apoptosis, and initiation or acceleration of tumorigenesis. Interaction with: members of IkB family and Rel family.

Implicated in

Entity cancer, autoimmune arthritis, glomerulonephritis, asthma, inflammatory bowel disease, septic shock, lung fibrosis, HTLV-1 infection, and AIDS.
  

External links

Nomenclature
HGNC (Hugo)RELB   9956
Entrez_Gene (NCBI)RELB  5971  v-rel reticuloendotheliosis viral oncogene homolog B
Cards
AtlasRELBID324
GeneCards (Weizmann)RELB
Ensembl (Hinxton)ENSG00000173039 [Gene_View]  RELB [Vega]
AceView (NCBI)RELB
Genatlas (Paris)RELB
euGene (Indiana)5971
SOURCE (Stanford)NM_006509
Genomic and cartography
GoldenPath (UCSC)RELB  -  19q13.32   chr19:50196552-50233292 +  19q13.32   [Description]    (hg18-Mar_2006)
EnsemblRELB - 19q13.32 [CytoView]
Mapping of homologs : NCBIRELB [Mapview]
OMIM604758   
Gene and transcription
Gene : Genbank (Entrez)AK290594 AL583128 AW137991 BC028013 BI906507
Reference sequence (RefSeq transcript) :SRSNM_006509
Reference transcript : EntrezNM_006509
RefSeq genomic : SRSAC_000062 AC_000151 NC_000019 NT_011109 NW_001838496 NW_927217
RefSeq genomic : EntrezAC_000062 AC_000151 NC_000019 NT_011109 NW_001838496 NW_927217
Consensus coding sequences : CCDS NCBIRELB
Cluster EST : UnigeneHs.654402 [ SRS ] Hs.654402 [ NCBI ]
Alternative Splicing : Fast-db (Paris)13256
Protein : pattern, domain, 3D structure
Protein : UniProt/SwissProtQ01201 (SRS) Q01201 (Expasy) Q01201 (Uniprot)
With graphics : InterProQ01201
Splice isoforms : VarSplice FASTAQ01201(VarSplice FASTA)
Domaine pattern : Prosite (SRS)REL_1 (PS01204)    REL_2 (PS50254)   
Domain pattern : Prosite (Expaxy)REL_1 (PS01204)    REL_2 (PS50254)   
Domains : Interpro (SRS)Ig-like_fold    IPT_TIG_rcpt    NF_Rel_dor    RHD   
Domains : Interpro (EBI)Ig-like_fold    IPT_TIG_rcpt    NF_Rel_dor    RHD   
Related proteins : CluSTrQ01201
Domain families : Pfam SRSRHD (PF00554)    TIG (PF01833)   
Domain families : Pfam SangerRHD (PF00554)    TIG (PF01833)   
Domain families : Pfam NCBIpfam00554    pfam01833   
Domain families : Smart EMBLIPT (SM00429)
Blocks (Seattle)Q01201
Crystal structure of protein : PDB SRS
Crystal structure of protein : PDBSum
Crystal structure of protein : IMB
Crystal structure of protein : PDB RSDB
HPRD06886
Protein Interaction databases
DIP (DOE-UCLA)Q01201
IntAct (EBI)Q01201
Polymorphism : SNP, mutations, diseases
Single Nucleotide Polymorphism (SNP) : dbSNP NCBIRELB
SNP : GeneSNP UtahRELB
SNP : HGBaseRELB
Genetic variants : HAPMAPRELB
Somatic Mutations in Cancer : COSMICRELB 
Mutations and Diseases : HGMDRELB
Hereditary diseases : OMIM604758   
Hereditary diseases : GENETests604758   
Diseases : Genetic AssociationRELB
General knowledge
Homologs : HomoloGeneRELB
Homology/Alignments : Family Browser UCSCRELB
Phylogenetic Trees/Animal Genes : TreeFamRELB
Chemical/Protein Interactions : CTD5971
Keywords Ontology : AmiGOtranscription factor activity  transcription corepressor activity  protein binding  nucleus  regulation of transcription, DNA-dependent  antigen processing and presentation  myeloid dendritic cell differentiation  T-helper 1 cell differentiation  
Keywords Ontology : EGO-EBItranscription factor activity  transcription corepressor activity  protein binding  nucleus  regulation of transcription, DNA-dependent  antigen processing and presentation  myeloid dendritic cell differentiation  T-helper 1 cell differentiation  
Pathways : BIOCARTA
Pathways : KEGG
Other databases
Probes
Probes : ImagenesRELB Related clones (RZPD - Berlin)
Literature
PubMed85 Pubmed reference(s) in Entrez
PubGeneRELB

Bibliography

I-Rel: a novel rel-related protein that inhibits NF-kappa B transcriptional activity.
Ruben SM, Klement JF, Coleman TA, Maher M, Chen CH, Rosen CA
Genes & development. 1992 ; 6 (5) : 745-760.
PMID 1577270
 
Human RelB (I-Rel) functions as a kappa B site-dependent transactivating member of the family of Rel-related proteins.
Bours V, Azarenko V, Dejardin E, Siebenlist U
Oncogene. 1994 ; 9 (6) : 1699-1702.
PMID 8183565
 
The NF-kappa B and I kappa B proteins: new discoveries and insights.
Baldwin AS Jr
Annual review of immunology. 1996 ; 14 : 649-683.
PMID 8717528
 
NF-kappa B and Rel proteins: evolutionarily conserved mediators of immune responses.
Ghosh S, May MJ, Kopp EB
Annual review of immunology. 1998 ; 16 : 225-260.
PMID 9597130
 
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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Contributor(s)

Written01-2002Fei Chen

Citation

This paper should be referenced as such :
Chen F . RELB. Atlas Genet Cytogenet Oncol Haematol. January 2002 .
URL : http://AtlasGeneticsOncology.org/Genes/RELBID324.html

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indexed on : Sat Jun 27 16:41:16 CEST 2009

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