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RELB

Identity

Other namesI-Rel
Hugo RELB
Location 19q13.32
Note see also, in the Deep Insight section: Upstream Signal Transduction of NF-kB Activation

DNA/RNA

Description The gene encoding human RelB has 11 exons spanning ~ 37 kb. Analysis of the 5'-flanking region of human relb gene indicates that RelB transcription is dependent on a TATA-less promoter containing two kB sites. Thus, while relA is constitutively expressed, the expression of both rel and relb is in an inducible fashion and dependent on NF-kB.

Protein

Description The human relb gene encodes a protein composed 579 amino acids with an approximately molecular weight of 66 kDa. Although structurally similar with other Rel family proteins containing RHD, NLS and TA domain, RelB contains an additional 121 amino acid region located at the N-terminus of RHD. Original study indicated that RelB failed to associate with RelA(p65) and to interact with DNA. That is the reason why it was named as inhibitive-Rel (I-Rel). In contrast, later studies demonstrated that RelB was able to form a heterodimer with NF-kB p50 or p52 and induce the transcription of target constructs or genes. No DNA binding activity has been suggested for the homodimeric complex of RelB, which may be possibly due to the N-terminal 121 amino acid domain that interfered with the DNA binding of RHD.
Expression wide.
Localisation cytosol, nuclei after activation.
Function regulation of the genes involved in cell-to-cell interaction, intercellular communication, cell recruitment or transmigration, amplification or spreading of primary pathogenic signals, cell apoptosis, and initiation or acceleration of tumorigenesis. Interaction with: members of IkB family and Rel family.

Implicated in

Entity cancer, autoimmune arthritis, glomerulonephritis, asthma, inflammatory bowel disease, septic shock, lung fibrosis, HTLV-1 infection, and AIDS.
  

External links

Nomenclature
HugoRELB
GDBRELB
Entrez_GeneRELB  5971  v-rel reticuloendotheliosis viral oncogene homolog B, nuclear factor of kappa light polypeptide gene enhancer in B-cells 3 (avian)
Cards
AtlasRELBID324
GeneCardsRELB
EnsemblRELB [Search_View]   ENSG00000173039 [Gene_View]
GenatlasRELB
GeneLynxRELB
eGenomeRELB
euGene5971
Genomic and cartography
GoldenPathRELB  -  19q13.32   chr19:50196552-50233292 +  19q13.32   [Description]    (hg18-Mar_2006)
EnsemblRELB - 19q13.32 [CytoView]
NCBIMapview
OMIMDisease map [OMIM]
HomoloGeneRELB
Gene and transcription
GenbankAK290594 [ ENTREZ ]
GenbankAL583128 [ ENTREZ ]
GenbankAW137991 [ ENTREZ ]
GenbankBC028013 [ ENTREZ ]
GenbankBI906507 [ ENTREZ ]
RefSeqNM_006509 [ SRS ]    NM_006509 [ ENTREZ ]
RefSeqAC_000062 [ SRS ]    AC_000062 [ ENTREZ ]
RefSeqNC_000019 [ SRS ]    NC_000019 [ ENTREZ ]
RefSeqNT_011109 [ SRS ]    NT_011109 [ ENTREZ ]
RefSeqNW_927217 [ SRS ]    NW_927217 [ ENTREZ ]
AceViewRELB AceView - NCBI
UnigeneHs.654402 [ SRS ]    Hs.654402 [ NCBI ]     HS654402 [ spliceNest ]
Fast-db13256 (alternative variants)
Protein : pattern, domain, 3D structure
SwissProtQ01201 [ SRS]    Q01201 [ EXPASY ]     Q01201 [ INTERPRO ]
PrositePS01204 REL_1 [ SRS ]    PS01204 REL_1 [ Expasy ]
PrositePS50254 REL_2 [ SRS ]    PS50254 REL_2 [ Expasy ]
InterproIPR013783 Ig-like_fold [ SRS ]    IPR013783 Ig-like_fold [ EBI ]
InterproIPR002909 IPT_TIG_rcpt [ SRS ]    IPR002909 IPT_TIG_rcpt [ EBI ]
InterproIPR000451 NF_Rel_dor [ SRS ]    IPR000451 NF_Rel_dor [ EBI ]
InterproIPR011539 RHD [ SRS ]    IPR011539 RHD [ EBI ]
CluSTrQ01201
PfamPF00554 RHD [ SRS ]    PF00554 RHD [ Sanger ]    pfam00554 [ NCBI-CDD ]
PfamPF01833 TIG [ SRS ]    PF01833 TIG [ Sanger ]    pfam01833 [ NCBI-CDD ]
SmartSM00429 IPT [EMBL]
BlocksQ01201
HPRD06886
Protein Interaction databases
DIPQ01201
IntActQ01201
Polymorphism : SNP, mutations, diseases
OMIM604758    [ map ]   
GENECLINICS604758
SNPRELB [dbSNP-NCBI]  
SNPNM_006509 [SNP-NCI]  
SNPRELB [GeneSNPs - Utah]  RELB] [HGBASE - SRS]
HAPMAPRELB [HAPMAP]  
COSMICRELB [Somatic mutation (COSMIC-CGP-Sanger)]  
HGMDRELB
General knowledge
Family BrowserRELB [UCSC Family Browser]
SOURCENM_006509
SMDHs.654402
SAGEHs.654402
GOtranscription factor activity [Amigo]  transcription factor activity
GOtranscription corepressor activity [Amigo]  transcription corepressor activity
GOprotein binding [Amigo]  protein binding
GOnucleus [Amigo]  nucleus
GOregulation of transcription, DNA-dependent [Amigo]  regulation of transcription, DNA-dependent
GOantigen processing and presentation [Amigo]  antigen processing and presentation
GOmyeloid dendritic cell differentiation [Amigo]  myeloid dendritic cell differentiation
GOT-helper 1 cell differentiation [Amigo]  T-helper 1 cell differentiation
PubGeneRELB
TreeFamRELB
CTD5971 [Comparative ToxicoGenomics Database]
Other databases
Probes
ProbeRELB Related clones (RZPD - Berlin)
PubMed
PubMed77 Pubmed reference(s) in LocusLink

Bibliography

I-Rel: a novel rel-related protein that inhibits NF-kappa B transcriptional activity.
Ruben SM, Klement JF, Coleman TA, Maher M, Chen CH, Rosen CA
Genes & development. 1992 ; 6 (5) : 745-760.
PMID 1577270
 
Human RelB (I-Rel) functions as a kappa B site-dependent transactivating member of the family of Rel-related proteins.
Bours V, Azarenko V, Dejardin E, Siebenlist U
Oncogene. 1994 ; 9 (6) : 1699-1702.
PMID 8183565
 
The NF-kappa B and I kappa B proteins: new discoveries and insights.
Baldwin AS Jr
Annual review of immunology. 1996 ; 14 : 649-683.
PMID 8717528
 
NF-kappa B and Rel proteins: evolutionarily conserved mediators of immune responses.
Ghosh S, May MJ, Kopp EB
Annual review of immunology. 1998 ; 16 : 225-260.
PMID 9597130
 
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written01-2002Fei Chen

Citation

This paper should be referenced as such :
Chen F . RELB. Atlas Genet Cytogenet Oncol Haematol. January 2002 .
URL : http://AtlasGeneticsOncology.org/Genes/RELBID324.html

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jul 2 08:26:44 2008


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