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SIAH2 (seven in absentia homolog 2 (Drosophila))

Identity

Other nameshSiah2
HGNC (Hugo) SIAH2
LocusID (NCBI) 6478
Location 3q25.1
Location_base_pair Starts at 150458910 and ends at 150481263 bp from pter ( according to hg19-Feb_2009)  [Mapping]

DNA/RNA

 
  Genomic organization of human Siah2. The line indicates intron and boxes indicate coding regions (exon 1-2) of the gene. Exon and intron lengths, the ATG transcription start site and the TGA stop codon are indicated.
Description The human Siah2 gene is composed of 2 exons spanning a genomic region of about 22.4 Kb.
Transcription The transcript length of human Siah2 is 2632 bp. The open reading frame of the coding region is 975 bp.
Pseudogene No pseudogene of Siah2 has been reported.

Protein

 
  Domains of human Siah2 protein.
Description Human Siah2 protein consists of 324 amino acids, with a molecular weight of 36 KDa. Siah protein consists of an N-terminal ring domain, followed by two zinc finger motifs, and a C-terminal substrate binding domain (SBD). The ring domain is the catalytic domain that recruits E2 ubiquitin-conjugating enzymes, while the SBD mediates the binding of adaptor proteins or some Siah substrate proteins. The structure of murine Siah1a SBD has been solved. The structure reveals that Siah is a dimeric protein, and the SBD adopts an eight-stranded beta-sandwich fold (Polekhina et al., 2001). The substrate binding groove is formed by the beta-sandwich fold and the beta-strand that connects to the second zinc finger domain (House et al., 2005).
Expression Siah2 mRNA is widely expressed in the embryonic and adult mouse tissues. It is expressed at a higher level in the olfactory epithelium, retina, forebrain and proliferating cartilage of developing bone (Della et al., 1993). Siah2 mRNA is also expressed in most human tissues (Hu et al., 1997).
Localisation Siah protein can be localized in both cytoplasm and nucleus.
Function Siah2 is the mammalian homolog of Drosophila SINA (seven in absentia), which interacts with transcriptional repressor Tramtrack via adaptor protein PHYL (Phyllopod) and induces the proteasomal degradation of Tramtrack, thereby determining R7 cell fate (Li et al., 1997; Tang et al., 1997). As a ring-finger E3 ubiquitin ligase, Siah targets the degradation of diverse substrates via ubiquitin-proteasome pathway, and affects multiple signaling pathways such as HIF (Nakayama et al., 2004), Ras (Nadeau et al., 2007; Schmidt et al., 2007), NF-kB (Polekhina et al., 2002; Habelhah et al., 2002), and beta-catenin (Liu et al., 2001; Matsuzawa and Reed, 2001). Siah2 transcription is upregulated by hypoxia (Nakayama et al., 2004); p38-mediated phosphorylation of mouse Siah2 on Thr24 and Ser29 alters its subcellular localization (Khurana et al., 2006); HIPK2-mediated phosphorylation of human Siah2 on Thr 26, Ser 28 and Ser 68 decreases the stability of Siah2 and impairs its interaction with HIPK2 (Calzado et al., 2009).
Over 20 Siah substrates have been reported (Nakayama et al., 2009) and some of them can be degradated by Siah2, Siah1 or both of them. In contrast to Siah1a knockout mice which exibit growth retardation and spermatogenesis defect, Siah2 knockout mice display no apparent phenotype, whereas Siah2 and Siah1a double knockout mice are embryonic or neonatal lethal, suggesting that the two Siah homologs have both overlapping and distinct functions in vivo (Frew et al., 2003). Despite the diverse substrates of Siah identified in vitro, loss of Siah2 (or both Siah2 and Siah1a) in vivo largely has no effect on the levels of many Siah substrates and the physiological processes associated with these substrates (Frew et al., 2002; Frew et al., 2003).
Siah2 is implicated in the regulation of hypoxia response through its effect on HIF prolyl hydroxylases or HIPK2 (Nakayama et al., 2004; Calzado et al., 2009). Siah2 knockout mice subject to hypoxia showed impaired respiratory response and defect to adjust levels of red blood cells (Nakayama et al., 2004). Siah2 has been shown to be required for development and progression of several types of cancers via its regulation of HIF or Ras pathways (House et al., 2009). Siah2-dependent degradation of Pard3A is found to control germinal zone exit of neuronal progenitors or immature neurons in mice (Famulski et al., 2010).
Homology Homologs: Human has two Siah genes (Siah1 and Siah2) (Hu et al., 1997), while mouse has three Siah genes (Siah2, Siah1a, Siah1b) (Della et al., 1993). Human Siah2 shares 77% identity with human Siah1 (Hu et al., 1997).
Orthologs: Highly conserved Siah2 orthologs have been identified in all multicellular organisms examined (Nakayama et al., 2009).

Mutations

Note No SIAH2 mutations have been reported.

Implicated in

Entity Lung cancer
Note Ahmed et al. showed that Siah2 knockdown in human lung cancer cell lines (BZR, A549, H727, and UMC11) inhibited MAPK-ERK signaling, reduced cell proliferation and increased apoptosis; Siah2 knockdown also reduced anchorage-independent growth of A549 cells in soft agar, and blocked the growth of A549 xenograft tumors in nude mice (Ahmed et al., 2007).
  
Entity Melanoma
Note Qi et al. showed that inhibition of Siah2 activity using different inhibitory proteins blocked tumor formation or metastasis of SW1 melanoma cells in a syngeneic mouse model due to the inhibition of Ras and HIF pathways, respectively (Qi et al., 2008). Similary, Shah et al. showed that a putative chemical inhibitor of Siah2, menadione, decreased the levels of HIF-1alpha and phospho-ERK in human melanoma cell line UACC903 and abolished the growth of xenograft tumor in nude mice (Shah et al., 2009).
  
Entity Breast cancer
Note Möller et al. showed that inhibition of Siah in a mouse breast cancer cell line reduced the xenograft tumor growth and prolonged the survival of mice due to inhibition of HIF pathway (Möller et al., 2009). Behling et al. examined the SIAH staining in 65 patients of ductal carcinoma in situ (DCIS). Higher level of Siah staining was observed in tumors compared with the normal adjacent tissues, and in tumors with more aggressive features. There was also higher Siah staining in specimens from patients with recurrence as compared to patients without recurrence. This study stuggests that Siah may serve as a prognostic biomarker that predicts DCIS progression to invasive breast cancer (Behling et al., 2010).
  
Entity Pancreatic cancer
Note Schmidt et al. showed that inhibition of Siah activity attenuated MAPK-ERK signaling, blocked RAS-induced focus formation in fibroblasts, abolished anchorage-independent growth of human pancreatic cancer cells in soft agar and xenograft tumor growth in nude mice (Schmidt et al., 2008).
  
Entity Prostate cancer
Note Qi et al. showed that knockout of Siah2 in the TRAMP model abolished the formation of prostate neuroendocrine tumor, inhibition of Siah2 activity blocked hypoxia-induced neuroendocrine differentiation (NED) in prostate cancer cells or in the xenogaft tumors, and Siah2 protein levels were higher in high-grade PCa that expresss NE markers. This study suggests that Siah2 plays a key role in development of prostate NE tumor and NED of human PCa by controling a cooperation between HIF and NE-specific transcription factor FoxA2 (Qi et al., 2010).
  

Breakpoints

Note There is no breakpoint reported.

External links

Nomenclature
HGNC (Hugo)SIAH2   10858
Entrez_Gene (NCBI)SIAH2  6478  siah E3 ubiquitin protein ligase 2
Cards
AtlasSIAH2ID46199ch3q25
GeneCards (Weizmann)SIAH2
Ensembl (Hinxton)ENSG00000181788 [Gene_View]  chr3:150458910-150481263 [Contig_View]  SIAH2 [Vega]
AceView (NCBI)SIAH2
Genatlas (Paris)SIAH2
SOURCE (Stanford)NM_005067
Genomic and cartography
GoldenPath (UCSC)SIAH2  -  3q25.1   chr3:150458910-150481263 -  3q25   [Description]    (hg19-Feb_2009)
EnsemblSIAH2 - 3q25 [CytoView]
Mapping of homologs : NCBISIAH2 [Mapview]
OMIM602213   
Gene and transcription
Genbank (Entrez)AK055290 AK223565 BC013082 BF514387 BM970396
RefSeq transcript (SRS)NM_005067
RefSeq transcript (Entrez)NM_005067
RefSeq genomic (SRS)AC_000135 NC_000003 NC_018914 NT_005612 NW_001838884 NW_004078013
RefSeq genomic (Entrez)AC_000135 NC_000003 NC_018914 NT_005612 NW_001838884 NW_004078013
Consensus coding sequences : CCDS (NCBI)SIAH2
Cluster EST : UnigeneHs.692394 [ SRS ] Hs.692394 [ NCBI ]
CGAP (NCI)Hs.692394
Alternative Splicing : Fast-db (Paris)GSHG0022153
Alternative Splicing GalleryENSG00000181788
Gene ExpressionSIAH2 [ NCBI-GEO ]   SIAH2 [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO43255 (SRS) O43255 (Uniprot)
NextProtO43255
With graphics : InterProO43255
Splice isoforms : SwissVarO43255(Swissvar)
Domaine pattern : Prosite (SRS)ZF_RING_1 (PS00518)    ZF_RING_2 (PS50089)    ZF_SIAH (PS51081)   
Domaine pattern : Prosite (Expaxy)ZF_RING_1 (PS00518)    ZF_RING_2 (PS50089)    ZF_SIAH (PS51081)   
Domains : Interpro (SRS)7-in-absentia-prot    7-in-absentia-prot_TRAF-dom    SIAH-type    TRAF-like    Znf_RING    Znf_RING/FYVE/PHD    Znf_SIAH   
Domains : Interpro (EBI)7-in-absentia-prot    7-in-absentia-prot_TRAF-dom    SIAH-type    TRAF-like    Znf_RING    Znf_RING/FYVE/PHD    Znf_SIAH   
Related proteins : CluSTrO43255
Domain families : Pfam (SRS)Sina (PF03145)   
Domain families : Pfam (Sanger)Sina (PF03145)   
Domain families : Pfam (NCBI)pfam03145   
Domain families : Smart (EMBL)RING (SM00184)  
DMDM6478
Blocks (Seattle)O43255
Human Protein AtlasENSG00000181788
HPRD03737
IPIIPI00305283   IPI00981863   IPI00946273   
Protein Interaction databases
DIP (DOE-UCLA)O43255
IntAct (EBI)O43255
FunCoupENSG00000181788
REACTOMESIAH2
Protein Interaction Database6478
BioGRIDSIAH2
InParanoidO43255
Interologous Interaction database O43255
IntegromeDBSIAH2
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)SIAH2
SNP (GeneSNP Utah)SIAH2
SNP : HGBaseSIAH2
Genetic variants : HAPMAPSIAH2
Somatic Mutations in Cancer : COSMICSIAH2 
CONAN: Copy Number AnalysisSIAH2 
Mutations and Diseases : HGMDSIAH2
OMIM602213   
GENETests602213   
Disease Genetic AssociationSIAH2
Huge Navigator SIAH2 [HugePedia]  SIAH2 [HugeCancerGEM]
Genomic VariantsSIAH2  SIAH2 [DGVbeta]
ClinVarSIAH2
snp3D : Map Gene to Disease6478
General knowledge
Homologs : HomoloGeneSIAH2
Homology/Alignments : Family Browser (UCSC)SIAH2
Phylogenetic Trees/Animal Genes : TreeFamSIAH2
Catalytic activity : Enzyme6.3.2.- [ Enzyme-Expasy ]   6.3.2.- [ Enzyme-SRS ]   6.3.2.- [ IntEnz-EBI ]   6.3.2.- [ BRENDA ]   6.3.2.- [ KEGG ]   
Chemical/Protein Interactions : CTD6478
Chemical/Pharm GKB GenePA35760
Clinical trialSIAH2
Cancer Resource (Charite)ENSG00000181788
Ontology : AmiGOtranscription corepressor activity  ubiquitin-protein ligase activity  protein binding  nucleus  cytoplasm  early endosome  cytosol  cytosol  ubiquitin-dependent protein catabolic process  cell cycle  small GTPase mediated signal transduction  axon guidance  zinc ion binding  regulation of protein ubiquitination  ubiquitin conjugating enzyme binding  neuron projection  neuronal cell body  negative regulation of apoptotic process  negative regulation of cysteine-type endopeptidase activity involved in apoptotic process  cellular protein catabolic process  negative regulation of canonical Wnt receptor signaling pathway  negative regulation of extrinsic apoptotic signaling pathway  
Ontology : EGO-EBItranscription corepressor activity  ubiquitin-protein ligase activity  protein binding  nucleus  cytoplasm  early endosome  cytosol  cytosol  ubiquitin-dependent protein catabolic process  cell cycle  small GTPase mediated signal transduction  axon guidance  zinc ion binding  regulation of protein ubiquitination  ubiquitin conjugating enzyme binding  neuron projection  neuronal cell body  negative regulation of apoptotic process  negative regulation of cysteine-type endopeptidase activity involved in apoptotic process  cellular protein catabolic process  negative regulation of canonical Wnt receptor signaling pathway  negative regulation of extrinsic apoptotic signaling pathway  
Pathways : KEGGTryptophan metabolism
Other databases
Probes
Litterature
PubMed62 Pubmed reference(s) in Entrez
PubGeneSIAH2
iHOPSIAH2

Bibliography

Characterization of human homologs of the Drosophila seven in absentia (sina) gene.
Hu G, Chung YL, Glover T, Valentine V, Look AT, Fearon ER.
Genomics. 1997 Nov 15;46(1):103-11.
PMID 9403064
 
Photoreceptor cell differentiation requires regulated proteolysis of the transcriptional repressor Tramtrack.
Li S, Li Y, Carthew RW, Lai ZC.
Cell. 1997 Aug 8;90(3):469-78.
PMID 9267027
 
PHYL acts to down-regulate TTK88, a transcriptional repressor of neuronal cell fates, by a SINA-dependent mechanism.
Tang AH, Neufeld TP, Kwan E, Rubin GM.
Cell. 1997 Aug 8;90(3):459-67.
PMID 9267026
 
Siah-1 mediates a novel beta-catenin degradation pathway linking p53 to the adenomatous polyposis coli protein.
Liu J, Stevens J, Rote CA, Yost HJ, Hu Y, Neufeld KL, White RL, Matsunami N.
Mol Cell. 2001 May;7(5):927-36.
PMID 11389840
 
Siah-1, SIP, and Ebi collaborate in a novel pathway for beta-catenin degradation linked to p53 responses.
Matsuzawa SI, Reed JC.
Mol Cell. 2001 May;7(5):915-26.
PMID 11389839
 
Normal p53 function in primary cells deficient for Siah genes.
Frew IJ, Dickins RA, Cuddihy AR, Del Rosario M, Reinhard C, O'Connell MJ, Bowtell DD.
Mol Cell Biol. 2002 Dec;22(23):8155-64.
PMID 12417719
 
Stress-induced decrease in TRAF2 stability is mediated by Siah2.
Habelhah H, Frew IJ, Laine A, Janes PW, Relaix F, Sassoon D, Bowtell DD, Ronai Z.
EMBO J. 2002 Nov 1;21(21):5756-65.
PMID 12411493
 
Siah ubiquitin ligase is structurally related to TRAF and modulates TNF-alpha signaling.
Polekhina G, House CM, Traficante N, Mackay JP, Relaix F, Sassoon DA, Parker MW, Bowtell DD.
Nat Struct Biol. 2002 Jan;9(1):68-75.
PMID 11742346
 
Generation and analysis of Siah2 mutant mice.
Frew IJ, Hammond VE, Dickins RA, Quinn JM, Walkley CR, Sims NA, Schnall R, Della NG, Holloway AJ, Digby MR, Janes PW, Tarlinton DM, Purton LE, Gillespie MT, Bowtell DD.
Mol Cell Biol. 2003 Dec;23(24):9150-61.
PMID 14645526
 
Siah2 regulates stability of prolyl-hydroxylases, controls HIF1alpha abundance, and modulates physiological responses to hypoxia.
Nakayama K, Frew IJ, Hagensen M, Skals M, Habelhah H, Bhoumik A, Kadoya T, Erdjument-Bromage H, Tempst P, Frappell PB, Bowtell DD, Ronai Z.
Cell. 2004 Jun 25;117(7):941-52.
PMID 15210114
 
Elucidation of the substrate binding site of Siah ubiquitin ligase.
House CM, Hancock NC, Moller A, Cromer BA, Fedorov V, Bowtell DD, Parker MW, Polekhina G.
Structure. 2006 Apr;14(4):695-701.
PMID 16615911
 
Regulation of the ring finger E3 ligase Siah2 by p38 MAPK.
Khurana A, Nakayama K, Williams S, Davis RJ, Mustelin T, Ronai Z.
J Biol Chem. 2006 Nov 17;281(46):35316-26. Epub 2006 Sep 25.
PMID 17003045
 
Regulation of Sprouty2 stability by mammalian Seven-in-Absentia homolog 2.
Nadeau RJ, Toher JL, Yang X, Kovalenko D, Friesel R.
J Cell Biochem. 2007 Jan 1;100(1):151-60.
PMID 16888801
 
Inhibition of RAS-mediated transformation and tumorigenesis by targeting the downstream E3 ubiquitin ligase seven in absentia homologue.
Schmidt RL, Park CH, Ahmed AU, Gundelach JH, Reed NR, Cheng S, Knudsen BE, Tang AH.
Cancer Res. 2007 Dec 15;67(24):11798-810.
PMID 18089810
 
Effect of disrupting seven-in-absentia homolog 2 function on lung cancer cell growth.
Ahmed AU, Schmidt RL, Park CH, Reed NR, Hesse SE, Thomas CF, Molina JR, Deschamps C, Yang P, Aubry MC, Tang AH.
J Natl Cancer Inst. 2008 Nov 19;100(22):1606-29. Epub 2008 Nov 11.
PMID 19001609
 
The ubiquitin ligase Siah2 regulates tumorigenesis and metastasis by HIF-dependent and -independent pathways.
Qi J, Nakayama K, Gaitonde S, Goydos JS, Krajewski S, Eroshkin A, Bar-Sagi D, Bowtell D, Ronai Z.
Proc Natl Acad Sci U S A. 2008 Oct 28;105(43):16713-8. Epub 2008 Oct 22.
PMID 18946040
 
Siah proteins: novel drug targets in the Ras and hypoxia pathways.
House CM, Moller A, Bowtell DD.
Cancer Res. 2009 Dec 1;69(23):8835-8. Epub 2009 Nov 17. (REVIEW)
PMID 19920190
 
An inducible autoregulatory loop between HIPK2 and Siah2 at the apex of the hypoxic response.
Calzado MA, de la Vega L, Moller A, Bowtell DD, Schmitz ML.
Nat Cell Biol. 2009 Jan;11(1):85-91. Epub 2008 Nov 30.
PMID 19043406
 
Inhibition of Siah ubiquitin ligase function.
Moller A, House CM, Wong CS, Scanlon DB, Liu MC, Ronai Z, Bowtell DD.
Oncogene. 2009 Jan 15;28(2):289-96. Epub 2008 Oct 13.
PMID 18850011
 
The ubiquitin ligase Siah2 and the hypoxia response.
Nakayama K, Qi J, Ronai Z.
Mol Cancer Res. 2009 Apr;7(4):443-51. (REVIEW)
PMID 19372575
 
Inhibition of Siah2 ubiquitin ligase by vitamin K3 (menadione) attenuates hypoxia and MAPK signaling and blocks melanoma tumorigenesis.
Shah M, Stebbins JL, Dewing A, Qi J, Pellecchia M, Ronai ZA.
Pigment Cell Melanoma Res. 2009 Dec;22(6):799-808. Epub 2009 Aug 27.
PMID 19712206
 
Increased SIAH expression predicts ductal carcinoma in situ (DCIS) progression to invasive carcinoma.
Behling KC, Tang A, Freydin B, Chervoneva I, Kadakia S, Schwartz GF, Rui H, Witkiewicz AK.
Breast Cancer Res Treat. 2010 Nov 19. [Epub ahead of print]
PMID 21088888
 
Siah regulation of Pard3A controls neuronal cell adhesion during germinal zone exit.
Famulski JK, Trivedi N, Howell D, Yang Y, Tong Y, Gilbertson R, Solecki DJ.
Science. 2010 Dec 24;330(6012):1834-8. Epub 2010 Nov 25.
PMID 21109632
 
Siah2-dependent concerted activity of HIF and FoxA2 regulates formation of neuroendocrine phenotype and neuroendocrine prostate tumors.
Qi J, Nakayama K, Cardiff RD, Borowsky AD, Kaul K, Williams R, Krajewski S, Mercola D, Carpenter PM, Bowtell D, Ronai ZA.
Cancer Cell. 2010 Jul 13;18(1):23-38.
PMID 20609350
 
Isolation and characterisation of murine homologues of the Drosophila seven in absentia gene (sina).
Della NG, Senior PV, Bowtell DD.
Oncotarget. 2010 Sep 24;1(5):379-385.
PMID 8404535
 
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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Contributor(s)

Written01-2011Jianfei Qi, Ze'ev Ronai
Signal Transduction Program, Sanford-Burnham Medical Research Institute, La Jolla, CA, 92037, USA

Citation

This paper should be referenced as such :
Qi J, Ronai Z . SIAH2 (seven in absentia homolog 2 (Drosophila)). Atlas Genet Cytogenet Oncol Haematol. January 2011 .
URL : http://AtlasGeneticsOncology.org/Genes/SIAH2ID46199ch3q25.html

This paper is referenced by INIST as such :
http://documents.irevues.inist.fr/bitstream/handle/2042/46003/01-2011-SIAH2ID46199ch3q25.pdf   [ Bibliographic record ]

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