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MMP11 (matrix metalloproteinase 11 (stromelysin 3))

Identity

Other namesST3 (stromelysin-3)
MMP-11 (matrix metalloproteinase 11)
HGNC (Hugo) MMP11
LocusID (NCBI) 4320
Location 22q11.2
Location_base_pair Starts at 24115036 and ends at 24126503 bp from pter ( according to hg19-Feb_2009)  [Mapping]

DNA/RNA

Description 8 exons and 7 introns spanning 11.5 kb; cDNA: 2247 bp, coding sequence 1464 bp
Transcription expression is induced by retinoic acid and TPA through a DR1-type responsive element and a C/EBP binding site, respectively, expression is induced by epithelial cells in a paracrin manner

Protein

Description 488 amino-acids; 51 kDa; functional domains: signal peptide, targeting the protein to the secretory pathway, prodomain containing a furin-type cleavage site responsible for the intracellular activation, catalytic domain containing a zinc binding site, hemopexin-like domain
Expression cells of mesenchymal origin, notably fibroblastic cells, macrophages, osteoclasts
Function extracellular zinc-dependent proteinase expressed during tissu remodelling processes (development, wound healing) and whose specific substrate is unknown
Homology member of the matrix metalloproteinases (MMP) subfamily of matrixins

Implicated in

Entity various cancer:
Disease expression of ST3 in 80 to 100% invasive carcinomas of the breast, colon, head and neck, lung, ovary, pancreas, prostate, skin (basal cell carcinoma), uterus (cervix carcinoma and endometrial carcinoma) and in some non-invasive carcinomas that have a high risk of evolving towards invasion; also expression in: fibroblastic stromal cells in the close vicinity of cancerous epithelial cells
Prognosis prognostic factor of invasion and aggressiveness of the tumors
  

External links

Nomenclature
HGNC (Hugo)MMP11   7157
Entrez_Gene (NCBI)MMP11  4320  matrix metallopeptidase 11 (stromelysin 3)
Cards
AtlasST3ID200
GeneCards (Weizmann)MMP11
Ensembl (Hinxton)ENSG00000099953 [Gene_View]  chr22:24115036-24126503 [Contig_View]  MMP11 [Vega]
AceView (NCBI)MMP11
Genatlas (Paris)MMP11
euGene (Indiana)4320
SOURCE (Stanford)NM_005940
Genomic and cartography
GoldenPath (UCSC)MMP11  -  22q11.2   chr22:24115036-24126503 +  22q11.2|22q11.23   [Description]    (hg19-Feb_2009)
EnsemblMMP11 - 22q11.2|22q11.23 [CytoView]
Mapping of homologs : NCBIMMP11 [Mapview]
OMIM185261   
Gene and transcription
Genbank (Entrez)AK075448 AK125911 AK129792 BC057788 DQ399599
RefSeq transcript (SRS)NM_005940
RefSeq transcript (Entrez)NM_005940
RefSeq genomic (SRS)AC_000154 NC_000022 NG_009303 NG_029443 NT_011520 NW_001838745
RefSeq genomic (Entrez)AC_000154 NC_000022 NG_009303 NG_029443 NT_011520 NW_001838745
Consensus coding sequences : CCDS (NCBI)MMP11
Cluster EST : UnigeneHs.143751 [ SRS ] Hs.143751 [ NCBI ]
Alternative Splicing : Fast-db (Paris)2592
Alternative Splicing GalleryENSG00000099953
Gene ExpressionMMP11 [ NCBI-GEO ]   MMP11 [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP24347 (SRS) P24347 (Uniprot)
With graphics : InterProP24347
Splice isoforms : SwissVarP24347(Swissvar)
Domaine pattern : Prosite (SRS)CYSTEINE_SWITCH (PS00546)    HEMOPEXIN (PS00024)    ZINC_PROTEASE (PS00142)   
Domaine pattern : Prosite (Expaxy)CYSTEINE_SWITCH (PS00546)    HEMOPEXIN (PS00024)    ZINC_PROTEASE (PS00142)   
Domains : Interpro (SRS)Hemopexin/matrixin    Hemopexin/matrixin_CS    Hemopexin/matrixin_repeat    MetalloPept_cat_dom    Pept_M10_metallopeptidase    Pept_M10A_matrix_strom    Pept_M10A_matrixin    Pept_M10A_Zn_BS    Peptidase_Metallo   
Domains : Interpro (EBI)Hemopexin/matrixin    Hemopexin/matrixin_CS    Hemopexin/matrixin_repeat    MetalloPept_cat_dom    Pept_M10_metallopeptidase    Pept_M10A_matrix_strom    Pept_M10A_matrixin    Pept_M10A_Zn_BS    Peptidase_Metallo   
Related proteins : CluSTrP24347
Domain families : Pfam (SRS)Hemopexin (PF00045)    Peptidase_M10 (PF00413)   
Domain families : Pfam (Sanger)Hemopexin (PF00045)    Peptidase_M10 (PF00413)   
Domain families : Pfam (NCBI)pfam00045    pfam00413   
Domain families : Smart (EMBL)HX (SM00120)  ZnMc (SM00235)  
Blocks (Seattle)P24347
Human Protein AtlasENSG00000099953
HPRD01705
IPIIPI00306778   IPI00435926   IPI00979323   IPI00880022   IPI00878228   IPI00877681   
Protein Interaction databases
DIP (DOE-UCLA)P24347
IntAct (EBI)P24347
FunCoupENSG00000099953
REACTOMEMMP11
BioGRIDMMP11
InParanoidP24347
Interologous Interaction database P24347
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)MMP11
SNP (GeneSNP Utah)MMP11
SNP : HGBaseMMP11
Genetic variants : HAPMAPMMP11
Somatic Mutations in Cancer : COSMICMMP11 
CONAN: Copy Number AnalysisMMP11 
Mutations and Diseases : HGMDMMP11
OMIM185261   
GENETests185261   
Disease Genetic AssociationMMP11
Huge Navigator MMP11 [HugePedia]  MMP11 [HugeCancerGEM]
Genomic VariantsMMP11
snp3D : Map Gene to Disease4320
General knowledge
Homologs : HomoloGeneMMP11
Homology/Alignments : Family Browser (UCSC)MMP11
Phylogenetic Trees/Animal Genes : TreeFamMMP11
Catalytic activity : Enzyme3.4.24.- [ Enzyme-Expasy ]   3.4.24.- [ Enzyme-SRS ]   3.4.24.- [ IntEnz-EBI ]   3.4.24.- [ BRENDA ]   3.4.24.- [ KEGG ]   
Chemical/Protein Interactions : CTD4320
Chemical/Pharm GKB GenePA30869
Clinical trialMMP11
Cancer Resource (Charite)ENSG00000099953
Ontology : AmiGOmetalloendopeptidase activity  calcium ion binding  extracellular region  proteinaceous extracellular matrix  proteolysis  multicellular organismal development  peptidase activity  zinc ion binding  collagen catabolic process  
Ontology : EGO-EBImetalloendopeptidase activity  calcium ion binding  extracellular region  proteinaceous extracellular matrix  proteolysis  multicellular organismal development  peptidase activity  zinc ion binding  collagen catabolic process  
Other databases
Probes
Probes : ImagenesMMP11 Related clones (RZPD - Berlin)
Litterature
PubMed48 Pubmed reference(s) in Entrez
PubGeneMMP11
iHOPMMP11

Bibliography

A novel metalloproteinase gene specifically expressed in stromal cells of breast carcinomas.
Basset P, Bellocq JP, Wolf C, Stoll I, Hutin P, Limacher JM, Podhajcer OL, Chenard MP, Rio MC, Chambon P
Nature. 1990 ; 348 (6303) : 699-704.
PMID 1701851
 
Stromelysin-3 gene expression in human cancer: an overview.
Rouyer N, Wolf C, Chenard MP, Rio MC, Chambon P, Bellocq JP, Basset P
Invasion & metastasis. 1994 19 95 ; 14 (1-6) : 269-275.
PMID 7657519
 
Structure and promoter characterization of the human stromelysin-3 gene.
Anglard P, Melot T, Guˆ©rin E, Thomas G, Basset P
The Journal of biological chemistry. 1995 ; 270 (35) : 20337-20344.
PMID 7657606
 
High levels of stromelysin-3 correlate with poor prognosis in patients with breast carcinoma.
Chenard MP, O'Siorain L, Shering S, Rouyer N, Lutz Y, Wolf C, Basset P, Bellocq JP, Duffy MJ
International journal of cancer. Journal international du cancer. 1996 ; 69 (6) : 448-451.
PMID 8980245
 
Stromelysin-3 is induced in tumor/stroma cocultures and inactivated via a tumor-specific and basic fibroblast growth factor-dependent mechanism.
Mari BP, Anderson IC, Mari SE, Ning Y, Lutz Y, Kobzik L, Shipp MA
The Journal of biological chemistry. 1998 ; 273 (1) : 618-626.
PMID 9417124
 
Stromelysin 3: an independent prognostic factor for relapse-free survival in node-positive breast cancer and demonstration of novel breast carcinoma cell expression.
Ahmad A, Hanby A, Dublin E, Poulsom R, Smith P, Barnes D, Rubens R, Anglard P, Hart I
The American journal of pathology. 1998 ; 152 (3) : 721-728.
PMID 9502414
 
In vivo evidence that the stromelysin-3 metalloproteinase contributes in a paracrine manner to epithelial cell malignancy.
Masson R, Lefebvre O, Noˆ´l A, Fahime ME, Chenard MP, Wendling C, Kebers F, LeMeur M, Dierich A, Foidart JM, Basset P, Rio MC
The Journal of cell biology. 1998 ; 140 (6) : 1535-1541.
PMID 9508784
 
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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Contributor(s)

Written03-2000Paul Basset, Marie-Christine Rio
Institut de Genetique et de Biologie Moleculaire et Cellulaire, CNRS/INSERM U184/ULP BP 163, Illkirch, CU de Strasbourg, France

Citation

This paper should be referenced as such :
Basset P and Rio MC . MMP11 (matrix metalloproteinase 11 (stromelysin 3)). Atlas Genet Cytogenet Oncol Haematol. March 2000 .
URL : http://AtlasGeneticsOncology.org/Genes/ST3ID200.html

This paper is referenced by INIST as such :
http://documents.irevues.inist.fr/bitstream/2042/37608/1/03-2000-ST3ID200.pdf   [ Bibliographic record ]

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indexed on : Sat Apr 28 15:07:13 CEST 2012

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