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TAL1 (T-cell acute leukemia 1)

Identity

Other namesSCL (stem cell leukaemia), TCL5 (T cell leukaemia 5)
HGNC (Hugo) TAL1
LocusID (NCBI) 6886
Location 1p32
Location_base_pair Starts at 47681963 and ends at 47695443 bp from pter ( according to hg19-Feb_2009)  [Mapping]

DNA/RNA

 
  DNA diagram
Description 8 exons; 16 kb; SIL (a different gene) sits 90 kb further in 5'
Transcription (complex) alternate splicing of: 1A with 2A, or 3 vs 1B, 2B,3 ...or directly 4, 5, 6

Protein

Description 331 amino acids for the major form of 48 KDa; a truncated form of 26 KDa only in some T-ALL; domains: prolin rich in N-trem; poly Gly; basic Helix-Loop-Helix from the exon 6.
Expression in hematopoietic stem cells, erythroid and megakaryocytic lineages of the adult and in the embryonic brain; indispensable for the genesis of the hematopoietic system.
Function transcription factor; exhibits sequence-specific DNA binding activity when in dimers with another bHLH protein such as E2A (DNA specific sequences are: CANNTG, especially: CAGATG); direct interactions of the bHLH with the LIM domain of RBTN2 or RBTN1.
Homology TAL2 in 9q32; LYL1 in 19p13; more distantly: MYC and other members of the MYC family of Helix-Loop-Helix transcription factors.

Implicated in

Entity t(1;7)(p32;q34) or t(1;14)(p32;q11)/T-ALL --> TAL1-TCRB or TAL1-TCRD
Disease T-cell ALL
Prognosis is not too poor, compared to other T-ALL
  
Entity T-ALL with normal karyotype, but with submicroscopic deletions of part of TAL1 in the 5' region --> SIL-TAL1.
Disease found in 10 to 30 % of T-ALL with a normal karyotype
Hybrid/Mutated Gene deletions which place SIL (SCL interrupting sequence) in close 5' of TAL1; hybrid gene with exon 1 from SIL.
Abnormal Protein TAL1 is under the promoter sequences controle of SIL, a gene active during T cell development.
  
Entity t(1;3)(p32;p21)/T-ALL --> TAL1-TCTA
Disease T-cell ALL
  

Breakpoints

 
Note mainly in 5' in a 1 kb region; but also dispersed in rare cases

External links

Nomenclature
HGNC (Hugo)TAL1   11556
Entrez_Gene (NCBI)TAL1  6886  T-cell acute lymphocytic leukemia 1
Cards
AtlasTAL1
GeneCards (Weizmann)TAL1
Ensembl (Hinxton)ENSG00000162367 [Gene_View]  chr1:47681963-47695443 [Contig_View]  TAL1 [Vega]
AceView (NCBI)TAL1
Genatlas (Paris)TAL1
euGene (Indiana)6886
SOURCE (Stanford)NM_003189
Genomic and cartography
GoldenPath (UCSC)TAL1  -  1p32   chr1:47681963-47695443 -  1p32   [Description]    (hg19-Feb_2009)
EnsemblTAL1 - 1p32 [CytoView]
Mapping of homologs : NCBITAL1 [Mapview]
OMIM187040   
Gene and transcription
Genbank (Entrez)BC144215 BC160033 M29038 M61108 N71056
RefSeq transcript (SRS)NM_003189
RefSeq transcript (Entrez)NM_003189
RefSeq genomic (SRS)AC_000133 NC_000001 NT_032977 NW_001838578
RefSeq genomic (Entrez)AC_000133 NC_000001 NT_032977 NW_001838578
Consensus coding sequences : CCDS (NCBI)TAL1
Cluster EST : UnigeneHs.705618 [ SRS ] Hs.705618 [ NCBI ]
Alternative Splicing : Fast-db (Paris)15891
Alternative Splicing GalleryENSG00000162367
Gene ExpressionTAL1 [ NCBI-GEO ]   TAL1 [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP17542 (SRS) P17542 (Uniprot)
With graphics : InterProP17542
Splice isoforms : SwissVarP17542(Swissvar)
Domaine pattern : Prosite (SRS)HLH (PS50888)   
Domaine pattern : Prosite (Expaxy)HLH (PS50888)   
Domains : Interpro (SRS)HLH_DNA-bd   
Domains : Interpro (EBI)HLH_DNA-bd   
Related proteins : CluSTrP17542
Domain families : Pfam (SRS)HLH (PF00010)   
Domain families : Pfam (Sanger)HLH (PF00010)   
Domain families : Pfam (NCBI)pfam00010   
Domain families : Smart (EMBL)HLH (SM00353)  
Blocks (Seattle)P17542
Human Protein AtlasENSG00000162367
HPRD01753
IPIIPI00747776   IPI00471993   IPI00218206   IPI00376954   
Protein Interaction databases
DIP (DOE-UCLA)P17542
IntAct (EBI)P17542
FunCoupENSG00000162367
REACTOMETAL1
BioGRIDTAL1
InParanoidP17542
Interologous Interaction database P17542
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)TAL1
SNP (GeneSNP Utah)TAL1
SNP : HGBaseTAL1
Genetic variants : HAPMAPTAL1
Cancer Gene: CensusTAL1 
Somatic Mutations in Cancer : COSMICTAL1 
CONAN: Copy Number AnalysisTAL1 
Mutations and Diseases : HGMDTAL1
OMIM187040   
GENETests187040   
Disease Genetic AssociationTAL1
Huge Navigator TAL1 [HugePedia]  TAL1 [HugeCancerGEM]
Genomic VariantsTAL1
snp3D : Map Gene to Disease6886
General knowledge
Homologs : HomoloGeneTAL1
Homology/Alignments : Family Browser (UCSC)TAL1
Phylogenetic Trees/Animal Genes : TreeFamTAL1
Chemical/Protein Interactions : CTD6886
Chemical/Pharm GKB GenePA36326
Clinical trialTAL1
Cancer Resource (Charite)ENSG00000162367
Ontology : AmiGOhistone deacetylase complex  negative regulation of transcription from RNA polymerase II promoter  nuclear chromatin  transcription regulatory region sequence-specific DNA binding  RNA polymerase II distal enhancer sequence-specific DNA binding  sequence-specific DNA binding RNA polymerase II transcription factor activity  RNA polymerase II transcription factor binding  angiogenesis  DNA binding  chromatin binding  sequence-specific DNA binding transcription factor activity  protein binding  nucleus  transcription factor complex  regulation of transcription from RNA polymerase II promoter  multicellular organismal development  locomotory behavior  enzyme binding  spinal cord association neuron differentiation  hemopoiesis  neuron differentiation  erythrocyte differentiation  erythrocyte differentiation  megakaryocyte differentiation  platelet formation  basophil differentiation  positive regulation of protein complex assembly  Lsd1/2 complex  embryonic hemopoiesis  megakaryocyte development  regulation of cell proliferation  histone deacetylase binding  erythrocyte maturation  transcription regulatory region DNA binding  cell fate commitment  regulation of myeloid cell differentiation  positive regulation of erythrocyte differentiation  positive regulation of erythrocyte differentiation  positive regulation of chromatin assembly or disassembly  positive regulation of transcription, DNA-dependent  positive regulation of mitotic cell cycle  positive regulation of transcription from RNA polymerase II promoter  protein heterodimerization activity  positive regulation of cell division  astrocyte fate commitment  definitive hemopoiesis  hemangioblast cell differentiation  hemopoietic stem cell differentiation  regulation of mast cell differentiation  E-box binding  regulation of stem cell maintenance  
Ontology : EGO-EBIhistone deacetylase complex  negative regulation of transcription from RNA polymerase II promoter  nuclear chromatin  transcription regulatory region sequence-specific DNA binding  RNA polymerase II distal enhancer sequence-specific DNA binding  sequence-specific DNA binding RNA polymerase II transcription factor activity  RNA polymerase II transcription factor binding  angiogenesis  DNA binding  chromatin binding  sequence-specific DNA binding transcription factor activity  protein binding  nucleus  transcription factor complex  regulation of transcription from RNA polymerase II promoter  multicellular organismal development  locomotory behavior  enzyme binding  spinal cord association neuron differentiation  hemopoiesis  neuron differentiation  erythrocyte differentiation  erythrocyte differentiation  megakaryocyte differentiation  platelet formation  basophil differentiation  positive regulation of protein complex assembly  Lsd1/2 complex  embryonic hemopoiesis  megakaryocyte development  regulation of cell proliferation  histone deacetylase binding  erythrocyte maturation  transcription regulatory region DNA binding  cell fate commitment  regulation of myeloid cell differentiation  positive regulation of erythrocyte differentiation  positive regulation of erythrocyte differentiation  positive regulation of chromatin assembly or disassembly  positive regulation of transcription, DNA-dependent  positive regulation of mitotic cell cycle  positive regulation of transcription from RNA polymerase II promoter  protein heterodimerization activity  positive regulation of cell division  astrocyte fate commitment  definitive hemopoiesis  hemangioblast cell differentiation  hemopoietic stem cell differentiation  regulation of mast cell differentiation  E-box binding  regulation of stem cell maintenance  
Other databases
Probes
Probes : ImagenesTAL1 Related clones (RZPD - Berlin)
Litterature
PubMed87 Pubmed reference(s) in Entrez
PubGeneTAL1
iHOPTAL1

Bibliography

Transcriptional activity of TAL1 in T cell acute lymphoblastic leukemia (T-ALL) requires RBTN1 or -2 and induces TALLA1, a highly specific tumor marker of T-ALL.
Ono Y, Fukuhara N, Yoshie O
The Journal of biological chemistry. 1997 ; 272 (7) : 4576-4581.
PMID 9020185
 
The TAL1/Scl basic helix-loop-helix protein blocks myogenic differentiation and E-box dependent transactivation.
Hofmann TJ, Cole MD
Oncogene. 1996 ; 13 (3) : 617-624.
PMID 8760303
 
The T cell leukemia oncoprotein SCL/tal-1 is essential for development of all hematopoietic lineages.
Porcher C, Swat W, Rockwell K, Fujiwara Y, Alt FW, Orkin SH
Cell. 1996 ; 86 (1) : 47-57.
PMID 8689686
 
Association of erythroid transcription factors: complexes involving the LIM protein RBTN2 and the zinc-finger protein GATA1.
Osada H, Grutz G, Axelson H, Forster A, Rabbitts TH
Proceedings of the National Academy of Sciences of the United States of America. 1995 ; 92 (21) : 9585-9589.
PMID 7568177
 
Specific in vivo association between the bHLH and LIM proteins implicated in human T cell leukemia.
Wadman I, Li J, Bash RO, Forster A, Osada H, Rabbitts TH, Baer R
The EMBO journal. 1994 ; 13 (20) : 4831-4839.
PMID 7957052
 
Clinical features and outcome of T-cell acute lymphoblastic leukemia in childhood with respect to alterations at the TAL1 locus: a Pediatric Oncology Group study.
Bash RO, Crist WM, Shuster JJ, Link MP, Amylon M, Pullen J, Carroll AJ, Buchanan GR, Smith RG, Baer R
Blood. 1993 ; 81 (8) : 2110-2117.
PMID 8471769
 
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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Contributor(s)

Written08-1997Jean-Loup Huret and Marie-Claude Labastie
-
Updated03-1998Jean-Loup Huret and Marie-Claude Labastie
Institut d'Embryologie Cellulaire et Moléculaire, CNRS FRE 216O, 94736, Nogent-sur-Marne Cedex, France

Citation

This paper should be referenced as such :
- . TAL1 (T-cell acute leukemia 1). Atlas Genet Cytogenet Oncol Haematol. August 1997 .
URL : http://AtlasGeneticsOncology.org/Genes/TAL1.html
Huret JL and Labastie MC . TAL1 (T-cell acute leukemia 1). Atlas Genet Cytogenet Oncol Haematol. March 1998 .
URL : http://AtlasGeneticsOncology.org/Genes/TAL1.html
Huret JL and Labastie MC . TAL1 (T-cell acute leukemia 1). Atlas Genet Cytogenet Oncol Haematol. .
URL : http://AtlasGeneticsOncology.org/Genes/TAL1.html

This paper is referenced by INIST as such :
   [ Bibliographic record ]
http://documents.irevues.inist.fr/bitstream/handle/2042/32019/08-1997-TAL1.pdf   [ Bibliographic record ]

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Apr 28 15:00:52 CEST 2012

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