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THBS1 (thrombospondin-1)

Identity

Other namesTSP1
platelet glycoprotein G
HGNC (Hugo) THBS1
Location 15q15
Location_base_pair Starts at 39873280 and ends at 39889667 bp from pter ( according to hg19-Feb_2009)  [Mapping]
Local_order Telomeric to FLJ39531, centromeric to FSIP1 (fibrous sheath interacting protein 1)

DNA/RNA

 
  Intron-exon organization of the THBS1 gene.
Description The THBS1 gene is 16,393 bases in size and is composed of 22 exons. Exons 2-21 encode the 5729 b mRNA.
Transcription Egr-1 and Sp1 sites function in the constitutive transcription of THBS1 stimulated by serum. Transcription is regulated by c-Jun/AP-1 in cooperation with the repressor Yin Yang-1 (YY-1) and by p53. USF2 mediates glucose-induced TSP1 transcription. Id1 represses transcription. The ATF-1 transcription factor also down-regulates transcription of TSP1 through an ATF/cAMP-responsive element-binding protein binding site. In contrast, Myc increases turnover of thrombospondin-1 mRNA. Transcription of THBS1 in some human cancers is suppressed through hypermethylation.
Pseudogene none described

Protein

 
  Domain organization and localization of selected ligand binding sites in TSP1. TSP1 is a homotrimer linked via disulfide bonds.
Description The TSP1 precursor contains 1170 amino acids; 129,412 Da. The mature secreted protein comprises residues 19-1170 and assembles into a disulfide linked homotrimer. Secreted TSP1 is a glycoprotein with a molecular mass of 150-180 kDa that contains approximately 12 Asn-linked mono-, bi- tri-, and tetraantennary complex oligosaccharides and variable numbers of C-mannosylated Trp residues in the type 1 repeats.
Expression TSP1 is expressed in many tissues during embryonic development but has limited expression in the healthy adult. TSP1 is the most abundant protein in alpha granules of platelets, but normal plasma levels are very low (typically 100-200 ng/ml). Expression in other cell types is induced by wounding, during tissue remodeling, in atherosclerotic lesions, rheumatoid synovium, glomerulonephritis, and in stroma of many tumors. Conversely, most but not all malignant cells in tumors exhibit loss of TSP1 expression during malignant progression. This loss is due to diminished positive regulation of the THBS1 gene by suppressor genes such as p53 and NM23 and increased negative regulation by oncogenes including Ras and Myc. TSP1 expression is induced by TGF-beta, vitamin A, progesterone, and retinoids and suppressed by nickel, Id1, and hepatocyte growth factor. TSP1 expression in the epidermis of skin is suppressed following exposure to UV irradiation.
Localisation TSP1 is secreted and present transiently in extracellular matrix but is rapidly internalized for degradation by fibroblasts and endothelial cells. TSP1 is abundant in megakaryocytes and platelets and is constitutively expressed at the dermal-epidermal boundary in skin and in subendothelial matrix of some blood vessels.
Function TSP1 binds to extracellular matrix ligands including fibrinogen, fibronectin, some collagens, latent and active transforming growth factor-beta-1, TSG6, heparin, plasmin, cathepsin G, neutrophil elastase, some MMPs, tissue factor pathway inhibitor, and heparan sulfate proteoglycans. TSP1 binds to cell surface receptors including CD36, CD47, some syndecans, LDL receptor-related protein-1 (via calreticulin) and the integrins alpha-V/beta-3, alpha-3/beta-1, alpha-4/beta-1, and alpha-6/beta-1. TSP1 is a slow tight inhibitor of plasmin, cathepsin G, and neutrophil elastase. TSP1 directly binds and activates latent TGF-beta-1.
TSP1 in a context-dependent and cell-specific manner stimulates or inhibits cell adhesion, proliferation, motility, and survival. TSP1 is a potent inhibitor of angiogenesis, but N-terminal proteolytic and recombinant parts of TSP1 have clear pro-angiogenic activities mediated by beta-1 integrins. In the immune system, TSP1 is a potent inhibitor of T cell and dendritic cell activation and mediates clearance of apoptotic cells by phagocytes. In the CNS, TSP1 secreted by astrocytes promotes synaptogenesis.
Based on studies of TSP1 null mice, platelet TSP1 is not essential for platelet aggregation, but TSP1 null mice have impaired wound repair, increased retinal angiogenesis, and are hyper-responsive to several inflammatory stimuli.
Homology TSP1 is a member of the thrombospondin family that also contains thrombospondin-2, -3, -4, and cartilage oligomeric matrix protein (COMP). The central type 1 repeats are also known as thrombospondin-repeats and are shared with the larger thrombospondin/properdin repeat superfamily.

Mutations

Germinal
  • a2210g (Asn700Ser) premature familial myocardial infarction; alters Ca-binding to TSP1.
  • g1678a (Thr523Ser) genetic risk factor of cerebral thrombosis in a Chinese population.
  • Implicated in

    Entity various cancers
    Disease associated with local invasive behavior, tumor neovascularization, and metastasis.
    Prognosis Decreased TSP1 expression has been correlated with malignant progression and decreased survival in several cancers. To date, the strongest data is for colorectal carcinomas. Five independent studies involving more than 400 patients have shown significant association of reduced TSP1 expression with increased invasion, microvascular densities, and poor prognosis.
    More limited studies have shown associations of decreased TSP1 with poor prognosis in squamous non-small cell lung carcinoma, pancreatic adenocarcinoma, invasive cervical carcinoma, and oral squamous cell carcinomas.
    TSP1 is generally not a useful prognostic factor in breast or prostate cancers, although one study of 58 breast DCIS showed loss of stromal TSP1 in DCIS with more aggressive histological features. Recent evidence indicates that the failure of TSP1 to protect in most breast cancers is due to an escape mechanism involving increased VEGF expression. Finally, TSP1 was positively correlated with invasion in hepatocellular and ovarian carcinomas.
    Oncogenesis Mutation of THBS1 has not been reported in cancers, but loss of THBS1 expression due to hypermethylation, transcriptional regulation by oncogenes or tumor suppressor genes, or altered mRNA stability has been reported in many cancers. Transgenic mouse models support the tumor suppressor activity of THBS1. Mice lacking TSP1 develop tumors earlier in a p53 null background. Conversely, transgenic mice overexpressing TSP1 in skin or mammary tissue are resistant to chemical or oncogene-driven carcinogenesis.
      

    External links

    Nomenclature
    HGNC (Hugo)THBS1   11785
    Entrez_Gene (NCBI)THBS1  7057  thrombospondin 1
    Cards
    AtlasTHBS1ID42548ch15q15
    GeneCards (Weizmann)THBS1
    Ensembl (Hinxton)ENSG00000137801 [Gene_View]  THBS1 [Vega]
    AceView (NCBI)THBS1
    Genatlas (Paris)THBS1
    euGene (Indiana)7057
    SOURCE (Stanford)NM_003246
    Gene Expression (Array Express) ENSG00000137801
    Genomic and cartography
    GoldenPath (UCSC)THBS1  -  15q15   chr15:39873280-39889667 +  15q15   [Description]    (hg19-Feb_2009)
    EnsemblTHBS1 - 15q15 [CytoView]
    Mapping of homologs : NCBITHBS1 [Mapview]
    OMIM188060   
    Gene and transcription
    Gene : Genbank (Entrez)AB209912 AI290070 AK291639 AK293230 AK304754
    Reference sequence (RefSeq transcript) :SRSNM_003246
    Reference transcript : EntrezNM_003246
    RefSeq genomic : SRSAC_000058 AC_000147 NC_000015 NT_010194 NW_001838214 NW_925840
    RefSeq genomic : EntrezAC_000058 AC_000147 NC_000015 NT_010194 NW_001838214 NW_925840
    Consensus coding sequences : CCDS NCBITHBS1
    Cluster EST : UnigeneHs.164226 [ SRS ] Hs.164226 [ NCBI ]
    Alternative Splicing : Fast-db (Paris)1969
    Protein : pattern, domain, 3D structure
    Protein : UniProt/SwissProtP07996 (SRS) P07996 (Expasy) P07996 (Uniprot)
    With graphics : InterProP07996
    Splice isoforms : VarSplice FASTAP07996(VarSplice FASTA)
    Domaine pattern : Prosite (SRS)EGF_1 (PS00022)    EGF_2 (PS01186)    EGF_3 (PS50026)    TSP1 (PS50092)    TSP3 (PS51234)    TSP_CTER (PS51236)    VWFC_1 (PS01208)    VWFC_2 (PS50184)   
    Domain pattern : Prosite (Expaxy)EGF_1 (PS00022)    EGF_2 (PS01186)    EGF_3 (PS50026)    TSP1 (PS50092)    TSP3 (PS51234)    TSP_CTER (PS51236)    VWFC_1 (PS01208)    VWFC_2 (PS50184)   
    Domains : Interpro (SRS)ConA-like_lec_gl    ConA-like_subgrp    EGF-like    EGF-like_reg_CS    EGF_3    EGF_Ca_bd_2    Laminin_G_thrombospondin_N    Thrombospondin_1_rpt    Thrombospondin_1_rpt_sub    Thrombospondin_3-like_rpt    Thrombospondin_3_rpt    Thrombospondin_C    VWF_C   
    Domains : Interpro (EBI)ConA-like_lec_gl    ConA-like_subgrp    EGF-like    EGF-like_reg_CS    EGF_3    EGF_Ca_bd_2    Laminin_G_thrombospondin_N    Thrombospondin_1_rpt    Thrombospondin_1_rpt_sub    Thrombospondin_3-like_rpt    Thrombospondin_3_rpt    Thrombospondin_C    VWF_C   
    Related proteins : CluSTrP07996
    Domain families : Pfam SRSEGF_CA (PF07645)    TSP_1 (PF00090)    TSP_3 (PF02412)    TSP_C (PF05735)    VWC (PF00093)   
    Domain families : Pfam SangerEGF_CA (PF07645)    TSP_1 (PF00090)    TSP_3 (PF02412)    TSP_C (PF05735)    VWC (PF00093)   
    Domain families : Pfam NCBIpfam07645    pfam00090    pfam02412    pfam05735    pfam00093   
    Domain families : Smart EMBLEGF (SM00181)  TSP1 (SM00209)  TSPN (SM00210)  VWC (SM00214)  
    Blocks (Seattle)P07996
    Crystal structure of protein : PDB SRS1LSL    1UX6    1Z78    1ZA4    2ERF    2ES3    2OUH    2OUJ   
    Crystal structure of protein : PDBSum1LSL    1UX6    1Z78    1ZA4    2ERF    2ES3    2OUH    2OUJ   
    Crystal structure of protein : IMB1LSL    1UX6    1Z78    1ZA4    2ERF    2ES3    2OUH    2OUJ   
    Crystal structure of protein : PDB RSDB1LSL    1UX6    1Z78    1ZA4    2ERF    2ES3    2OUH    2OUJ   
    Human Protein AtlasENSG00000137801
    HPRD01765
    Protein Interaction databases
    DIP (DOE-UCLA)P07996
    IntAct (EBI)P07996
    FunCoupENSG00000137801
    Polymorphism : SNP, mutations, diseases
    Single Nucleotide Polymorphism (SNP) : dbSNP NCBITHBS1
    SNP : GeneSNP UtahTHBS1
    SNP : HGBaseTHBS1
    Genetic variants : HAPMAPTHBS1
    Somatic Mutations in Cancer : COSMICTHBS1 
    Mutations and Diseases : HGMDTHBS1
    Hereditary diseases : OMIM188060   
    Hereditary diseases : GENETests188060   
    Diseases : Genetic AssociationTHBS1
    General knowledge
    Homologs : HomoloGeneTHBS1
    Homology/Alignments : Family Browser UCSCTHBS1
    Phylogenetic Trees/Animal Genes : TreeFamTHBS1
    Chemical/Protein Interactions : CTD7057
    Keywords Ontology : AmiGOactivation of MAPK activity  response to hypoxia  phosphatidylserine binding  negative regulation of endothelial cell proliferation  negative regulation of endothelial cell proliferation  glycoprotein binding  negative regulation of cell-matrix adhesion  fibronectin binding  sprouting angiogenesis  chronic inflammatory response  negative regulation of antigen processing and presentation of peptide or polysaccharide antigen via MHC class II  negative regulation of dendritic cell antigen processing and presentation  integrin binding  structural molecule activity  calcium ion binding  protein binding  extracellular region  fibrinogen complex  extracellular space  apoptosis  anti-apoptosis  induction of apoptosis  immune response  cell cycle arrest  cell adhesion  heparin binding  response to glucose stimulus  external side of plasma membrane  positive regulation of endothelial cell migration  negative regulation of endothelial cell migration  positive regulation of oxygen and reactive oxygen species metabolic process  negative regulation of plasma membrane long-chain fatty acid transport  negative regulation of nitric oxide mediated signal transduction  negative regulation of cGMP-mediated signaling  negative regulation of plasminogen activation  positive regulation of macrophage chemotaxis  positive regulation of fibroblast migration  positive regulation of cell-substrate adhesion  cell migration  negative regulation of angiogenesis  peptide cross-linking  secretory granule  low-density lipoprotein binding  positive regulation of blood coagulation  positive regulation of cell migration  positive regulation of cell migration  positive regulation of transforming growth factor beta receptor signaling pathway  extracellular matrix  platelet alpha granule  platelet alpha granule lumen  response to magnesium ion  response to progesterone stimulus  negative regulation of interleukin-12 production  positive regulation of transforming growth factor-beta1 production  cellular response to heat  negative regulation of fibroblast growth factor receptor signaling pathway  positive regulation of phosphorylation  response to drug  positive regulation of tumor necrosis factor biosynthetic process  identical protein binding  positive regulation of macrophage activation  negative regulation of apoptosis  negative regulation of caspase activity  laminin binding  proteoglycan binding  eukaryotic cell surface binding  positive regulation of blood vessel endothelial cell migration  negative regulation of blood vessel endothelial cell migration  engulfment of apoptotic cell  positive regulation of translation  positive regulation of angiogenesis  fibroblast growth factor 2 binding  transforming growth factor beta binding  transforming growth factor beta binding  positive regulation of chemotaxis  response to calcium ion  negative regulation of focal adhesion assembly  positive regulation of protein kinase B signaling cascade  negative regulation of fibrinolysis  fibrinogen binding  collagen V binding  
    Keywords Ontology : EGO-EBIactivation of MAPK activity  response to hypoxia  phosphatidylserine binding  negative regulation of endothelial cell proliferation  negative regulation of endothelial cell proliferation  glycoprotein binding  negative regulation of cell-matrix adhesion  fibronectin binding  sprouting angiogenesis  chronic inflammatory response  negative regulation of antigen processing and presentation of peptide or polysaccharide antigen via MHC class II  negative regulation of dendritic cell antigen processing and presentation  integrin binding  structural molecule activity  calcium ion binding  protein binding  extracellular region  fibrinogen complex  extracellular space  apoptosis  anti-apoptosis  induction of apoptosis  immune response  cell cycle arrest  cell adhesion  heparin binding  response to glucose stimulus  external side of plasma membrane  positive regulation of endothelial cell migration  negative regulation of endothelial cell migration  positive regulation of oxygen and reactive oxygen species metabolic process  negative regulation of plasma membrane long-chain fatty acid transport  negative regulation of nitric oxide mediated signal transduction  negative regulation of cGMP-mediated signaling  negative regulation of plasminogen activation  positive regulation of macrophage chemotaxis  positive regulation of fibroblast migration  positive regulation of cell-substrate adhesion  cell migration  negative regulation of angiogenesis  peptide cross-linking  secretory granule  low-density lipoprotein binding  positive regulation of blood coagulation  positive regulation of cell migration  positive regulation of cell migration  positive regulation of transforming growth factor beta receptor signaling pathway  extracellular matrix  platelet alpha granule  platelet alpha granule lumen  response to magnesium ion  response to progesterone stimulus  negative regulation of interleukin-12 production  positive regulation of transforming growth factor-beta1 production  cellular response to heat  negative regulation of fibroblast growth factor receptor signaling pathway  positive regulation of phosphorylation  response to drug  positive regulation of tumor necrosis factor biosynthetic process  identical protein binding  positive regulation of macrophage activation  negative regulation of apoptosis  negative regulation of caspase activity  laminin binding  proteoglycan binding  eukaryotic cell surface binding  positive regulation of blood vessel endothelial cell migration  negative regulation of blood vessel endothelial cell migration  engulfment of apoptotic cell  positive regulation of translation  positive regulation of angiogenesis  fibroblast growth factor 2 binding  transforming growth factor beta binding  transforming growth factor beta binding  positive regulation of chemotaxis  response to calcium ion  negative regulation of focal adhesion assembly  positive regulation of protein kinase B signaling cascade  negative regulation of fibrinolysis  fibrinogen binding  collagen V binding  
    Pathways : BIOCARTATSP-1 Induced Apoptosis in Microvascular Endothelial Cell [Genes]   
    Pathways : KEGGECM-receptor interactionFocal adhesionCell CommunicationTGF-beta signaling pathway
    Other databases
    Probes
    Probes : ImagenesTHBS1 Related clones (RZPD - Berlin)
    Literature
    PubMed247 Pubmed reference(s) in Entrez
    PubGeneTHBS1

    Bibliography

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    REVIEW articlesautomatic search in PubMed
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    Contributor(s)

    Written05-2005David D Roberts
    Biochemical Pathology Section, Laboratory of Pathology, CCR, NCI, Bethesda, Maryland 20892, USA

    Citation

    This paper should be referenced as such :
    Roberts DD . THBS1 (thrombospondin-1). Atlas Genet Cytogenet Oncol Haematol. May 2005 .
    URL : http://AtlasGeneticsOncology.org/Genes/THBS1ID42548ch15q15.html

    © Atlas of Genetics and Cytogenetics in Oncology and Haematology
    indexed on : Thu Jul 15 14:47:03 CEST 2010

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