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TNIK (TRAF2 and NCK interacting kinase)

Written2020-03Adriana Cassaro
Department of Health Sciences, University of Milan, via A. Di Rudini', 8 20142, Milan (Italy); adriana.cassaro87@gmail.com

Abstract The serine/threonine kinase Traf2- and Nck interacting kinase (TNIK), is a member of the germinal center kinase (GCK) family that has been reported to have an important role in the regulation of Jun N-terminal kinase pathway (JNK) activation and actin cytoskeleton. It has also been demonstrated that TNIK is an important activator of Wnt pathway, where it interacts with β-catenin/TCF4 complex, phosphorylates TCF4 inducing the transcription of Wnt target genes. In several studies, the expression of TNIK has been established to be involved in different human cancers.

Keywords TNIK, TRAF2 and NCK interacting kinase, TCF4, β-catenin, CTNNB1

(Note : for Links provided by Atlas : click)

Identity

Alias_symbol (synonym)KIAA0551
Other aliasTRAF2 and NCK-Interacting Protein Kinase 3 4
EC 2.7.11.1 4 52
EC 2.7.11 52
KIAA0551 4
MRT54 3
HGNC (Hugo) TNIK
LocusID (NCBI) 23043
Atlas_Id 43532
Location 3q26.2-q26.31  [Link to chromosome band 3q26]
Location_base_pair Starts at 171058414 and ends at 171460405 bp from pter ( according to hg19-Feb_2009)  [Mapping TNIK.png]
Local_order Starts at 171058414 and ends at 171460408 bp from pter
 
  Figure 1: Location of TNIK gene on chr3.
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

DNA/RNA

Description The TNIK gene size is 397827bp encoding by 33 exons. This gene has 15 transcripts (splice variants), 312 orthologues, 35 paralogues (http://www.ensembl.org/).The protein encoded by this gene is a serine/threonine kinase that functions as an activator of the Wnt signaling pathway.
Transcription 15 transcripts variant have been found for this gene (http://www.ensembl.org/).
TNIK-204 ENST00000436636.7 : mRNA 9892bp, protein 1360aa
TNIK-202 ENST00000341852.10 : mRNA 4727, protein 1276aa
TNIK-201 ENST00000284483.12 : mRNA 4059, protein 1352aa
TNIK-203 ENST00000357327.9 : mRNA 3996, protein 1331aa
TNIK-210 ENST00000470834.5 : mRNA 3972, protein 1323aa
TNIK-214 ENST00000488470.5 : mRNA 3918, protein 1305aa
TNIK-206 ENST00000460047.5 : mRNA 3894, protein 1297aa
TNIK-211 ENST00000475336.5 : mrNA 3807, protein 1268aa
TNIK-209 ENST00000468757.1 : mRNA1128, protein 350aa
TNIK-208 ENST00000465393.1 : mRNA 750, protein 45aa
TNIK-207 ENST00000464785.1 : mRNA 437, no protein
TNIK-215 ENST00000496492.5 : mRNA 2736, no protein
TNIK-212 ENST00000484051.5 : mRNA 1180, no protein
TNIK-205 ENST00000459881.1 : mRNA 583, no protein
TNIK-213 ENST00000487846.1 : mRNA 573, no protein

Protein

 
  Figure 2: Schematic illustration of TNIK protein domains.
Description The serine/threonine kinase Traf2- and Nck interacting kinase (TNIK), is a member of the germinal center kinase (GCK) family, that it was isolated by yeast two-hybrid screening for proteins that interact with TRAF2 and NCK (Fu CA et al.,1999). It was demonstrated that TNIK regulates Jun N-terminal kinase pathway (JNK), the actin cytoskeleton, it is an important activator of Wnt signaling and it is involved in in the survival of many human cancer cells (Lee Y. et al., 2017).
The gene TNIK encodes a 1360 aa protein with several spliced isoforms. This protein has an N-terminal kinase domain, an intermediate domain and an C-terminal germinal center kinase homology (GCKH) region, later called Citron homology (CNH) domain (Fu CA et al.,1999; Taira K. et al., 2004) It was observed that it shared about 90% amino acid identity with other two previously cloned GCK family member, NIK and MAPK4, in both its kinase and CNH domains. However, this homology goes down to about 50% in the intermediate region suggesting potentially different signaling role for these GCK proteins (Su YC. et al.,1997; Taira K. et al., 2004).
 
  Figure 3: Representative images of: A) TNIK FISH on gastric cancer cells sample; B) TNIK immunostaining on CRC epithelium sample; C) TNIK Immunofluorescent staining of human cell line U-2 OS (Yu DH et al., 2014; Takahashi H et al.,2015; https://www.proteinatlas.org/)
Expression TNIK is ubiquitously expressed in human. It is expressed with high level in brain, small intestine, duodenum, testis, heart, normal and cancer epithelia colon tissues. Its expression it also observed in endometrium, lung, lymph node, kidney, spleen, thyroid, urinary bladder, gall bladder, prostate, endometrium, adrenal, bone marrow (https://www.ncbi.nlm.nih.gov/)
Localisation TNIK is mainly localized in the nucleoplasm and cytosol (https://www.uniprot.org/)
 
  Figure 4: Schematic illustration of Wnt signaling activation. Binding of Wnt proteins to FZD leads to activation of CTNNB1 (β-catenin) in the cytoplasm. Subsequently, TNIK binds to active β-catenin and this complex is recruited to the nucleus, where TNIK directly phosphorylates TCF4 inducing the transcription of Wnt target genes.
Function TNIK was discovered by Fu CA et al. in 1999, with a yeast-two-hybrid screen for interaction partners of the adapter proteins TRAF2 and NCK. Like several other GCK family members, TNIK regulates activation of JNK pathway which is induced through the CNH domain by a yet undefined mechanism (Fu CA et al., 1999). TNIK overexpression also modulates the actin cytoskeleton; through its kinase domain, inducing disruption of F-actin structure and inhibiting cell spreading (Taira K et al., 2004). TNIK protein is known to be implicated in Wnt pathway activation. Mahmoudi T. et al. in 2009, have identified TNIK as a co-activator protein that interact both TCF4/β-catenin complex in the proliferative cripts of mouse small intestine. Through in vitro assays they showed that TNIK directly bind both TCF4 and β-catenin and phosphorylates TCF4 leading to transcriptional activation of Wnt target genes. This protein is also involved in the dendrite development. NEDD4, the TNIK, and RAP2A form a complex that controls NEDD4-mediated ubiquitination of RAP2A. Ubiquitination by NEDD4 inhibits RAP2A function, which reduces the activity of Rap2 effector kinases of the TNIK family and promotes dendrite growth (Kawabe H. et al., 2010).
Homology TNIK is conserved in human, mouse, chicken, C. Elegans

Mutations

 
  Figure 5: Overview of the major types of mutations occurring in TNIK
Germinal Recently, Anazi S. et al. in 2016 have identified in 2 unrelated consanguineous Saudi families affected with autosomal recessive mental retardation-54 (MRT54) the same homozygous truncating mutation in the TNIK gene that results in complete loss of the protein, indicating that the mutation resulted in a null allele.
Somatic Some somatic mutations have been identified and described by COSMIC (Catalogue of Somatic Mutation In Cancer) and they are listed mostly as substitution; their role in disease has not yet been fully elucidated.

Implicated in

  
Entity Mental retardation, autosomal recessive 54; MRT54
Note Mental retardation autosomal recessive 54 (MRT54) is a disorder characterized by significantly below average general intellectual functioning. MRT54 is caused by homozygous mutation in the TNIK gene. Anazi S. et al. in 2016 identified a homozygous c.538C-T transition (c.538C-T, NM_001161563) in the TNIK gene, resulting in an arg180-to-ter (R180X) substitution. This mutation causes the formation of a truncated protein resulting in a null allele.
  
  
Entity Glioma
Note Glioma is the most common primary cancers of the central nervous system. NEDD4 is reported to bind rather than ubiquitinate TNIK in regulating the ubiquitination of GTP-RAP2A in neuron development. Wang L.et al in 2017, showed that NEDD4 plays a pivotal role in promoting the migration and invasion of glioma cell lines U251 and U87 by the inhibition of the RAP2A/TNIK complex activity.
  
  
Entity Colorectal cancer
Note TNIK protein is essential for the Wnt signaling activation and it was demonstrated that colorectal cancer cells were highly dependent on TNIK for their growth (Shitashige M. et al., 2010). Masuda M et al. in 2016, showed that NCB-0846 small molecule, with high inhibitory activity against TNIK, blocked Wnt signaling and presented anti tumor and anti-CSC effect on CRC cells.
  
  
Entity Gastric cancer
Note Microarray analysis in Chinese gastric cancer patients reported that TNIK gene is amplified in 7% of samples analyzed. Moreover, it was showed that both silencing and TNIK inhibitor increased cell death and reduced cell growth in TNIK amplified gastric cancer cell line, but not in TNIK not amplified cell line. Difference of CRC, in gastric cancer the role of TNIK protein is independent of Wnt pathway. (Yu DH et. al., 2014)
  
  
Entity Pancreatic cancer
Note In pancreatic cancer patients has been shown the clinical and prognostic value of TNIK. It was observed that mRNA and protein levels of TNIK in pancreatic cancer were both significantly higher than those in corresponding paratumor tissues. In addition, they revealed that patients with high expression of TNIK had a shorter overall survival (OS) and disease-free survival (DFS) than those with low expression (Zhang Y. et al., 2016).
  
  
Entity Prostate cancer
Note Prostate cancer is the fifth leading cause of cancer-related deaths in men worldwide. It was demonstrated a nuclear expression of TNIK in prostate cancer primary cells and its correlation with ERG expression. Interestingly, inhibition of expression and activity of TNIK in ERG positive prostate cancer cells reduced colony formation and cell viability suggesting TNIK as a novel therapeutic target to the treatment of ERG positive prostate cancer. (Lee RS et al., 2019)
  
  
Entity Lung adenocarcinoma
Note It is known that TINK regulates both the Wnt and Smad pathways, which are both important for epithelial-to-mesenchymal transition (EMT) on cancer cells (Mahmoudi T. et al., 2009; Kaneko S. et al., 2011). Jiyeon Kim J. et al. in 2014, showed that KY-05009 molecule, a potent inhibitor of TNIK activity reduces TGFB1 (TGF-β1=-Mediated Epithelial-to-Mesenchymal Transition in Human Lung Adenocarcinoma A549 cell line. They observed that KY-05009 inhibitor had a double effects on A549 cells: it is able to inhibits TGF-β1- mediated Wnt signaling through inhibition of the kinase activity of TNIK, which phosphorylates TCF4 and it inhibits TGF-β1-induced phosphorylation and nuclear translocation of SMAD2 and the expression of SNAI2 (Snail) and TWIST1 cofactors involved in the TGF-β1-induced EMT.
  
  
Entity Breast cancer
Note Breast cancer is the most common cancer in the woman malignant with a high percentage of chemoresistance. It was observed that RNA interference assays on breast cancer cell lines led to inhibition of cell growth (Jiao X et al., 2013).
Li Z. et al. in 2018 through RNA-seq data showed that TNIK is positive regulated by transcriptional coactivator WBP2 in triple negative breast cancer cells (TNBC). They demonstrated that WBP2 primes cells to response to Wnt ligands by up-regulation of TNIK and GPS1 in triple negative TNBC cells. WBP2 integrates JNK with Wnt signaling improving the growth of TNBC cells.
  
  
Entity Multiple Myeloma
Note Multiple myeloma (MM) is a plasma cell malignancy characterized by an accumulation of monoclonal plasma cells in the bone marrow. It was demonstrated that silencing and pharmacological inhibition of endogenous TNIK protein suppressed the proliferation of MM cells and induced caspase-dependent apoptosis (Chon HJ. Et al., 2016). Moreover, inhibition of Wnt signaling by TNIK inhibitors can suppress the IL6 -induced proliferation of MM cells suggesting TNIK protein as a target to develop new therapeutic strategies against MM (Lee Y. et al., 2017).
  
  
Entity Chronic myelogenous leukemia
Note Schürch C. et al. in 2012, identified CD27 signal transduction as a new link between the immune system and Wnt signaling/leukemia development in CML. It was demonstrated that the TNF receptor family member CD27 is present on leukemia stem cells and its bond with CD70 ligand increased expression of Wnt target genes in LSCs by enhancing nuclear localization of active β-catenin and TRAF2-and NCK-interacting kinase (TNIK). As a consequence of this, they revealed an increased proliferation and differentiation of LCS. Moreover, blocking CD70 by monoclonal antibody (mAb) treatment reduced disease progression and prolonged survival of CML mice.
  
  
Entity Polycystic ovarian syndrome (PCOS)
Note Polycystic ovary syndrome (PCOS) is the most common endocrinopathy, affecting about 10% of the reproductive-age female population. Wang XX et al. in 2014, saw that PCOS ovarian tissues showed a specific methylation and expression pattern of the TNIK gene. They also reported that the TNIK transcript was up-regulated in PCOS ovarian tissues, compared with normal ovarian tissues, and that methylation of cg10180092 site play a key role in the regulation of TNIK transcription (Li D. et al., 2015). It is necessary other studies to better understood the epigenetic mechanism involved in the initiation and progression of TNIK-related PCOS.
  

Bibliography

A null mutation in TNIK defines a novel locus for intellectual disability
Anazi S, Shamseldin HE, AlNaqeb D, Abouelhoda M, Monies D, Salih MA, Al-Rubeaan K, Alkuraya FS
Hum Genet 2016 Jul;135(7):773-8
PMID 27106596
 
Traf2- and Nck-interacting kinase (TNIK) is involved in the anti-cancer mechanism of dovitinib in human multiple myeloma IM-9 cells
Chon HJ, Lee Y, Bae KJ, Byun BJ, Kim SA, Kim J
Amino Acids 2016 Jul;48(7):1591-9
PMID 26995282
 
TNIK, a novel member of the germinal center kinase family that activates the c-Jun N-terminal kinase pathway and regulates the cytoskeleton
Fu CA, Shen M, Huang BC, Lasaga J, Payan DG, Luo Y
J Biol Chem 1999 Oct 22;274(43):30729-37
PMID 10521462
 
Gene rearrangements in hormone receptor negative breast cancers revealed by mate pair sequencing
Jiao X, Hooper SD, Djureinovic T, Larsson C, Wärnberg F, Tellgren-Roth C, Botling J, Sjöblom T
BMC Genomics 2013 Mar 12;14:165
PMID 23496902
 
Smad inhibition by the Ste20 kinase Misshapen
Kaneko S, Chen X, Lu P, Yao X, Wright TG, Rajurkar M, Kariya K, Mao J, Ip YT, Xu L
Proc Natl Acad Sci U S A 2011 Jul 5;108(27):11127-32
PMID 21690388
 
Regulation of Rap2A by the ubiquitin ligase Nedd4-1 controls neurite development
Kawabe H, Neeb A, Dimova K, Young SM Jr, Takeda M, Katsurabayashi S, Mitkovski M, Malakhova OA, Zhang DE, Umikawa M, Kariya K, Goebbels S, Nave KA, Rosenmund C, Jahn O, Rhee J, Brose N
Neuron 2010 Feb 11;65(3):358-72
PMID 20159449
 
A novel aminothiazole KY-05009 with potential to inhibit Traf2- and Nck-interacting kinase (TNIK) attenuates TGF-β1-mediated epithelial-to-mesenchymal transition in human lung adenocarcinoma A549 cells
Kim J, Moon SH, Kim BT, Chae CH, Lee JY, Kim SH
PLoS One 2014 Oct 22;9(10):e110180
PMID 25337707
 
Characterization of the ERG-regulated Kinome in Prostate Cancer Identifies TNIK as a Potential Therapeutic Target
Lee RS, Zhang L, Berger A, Lawrence MG, Song J, Niranjan B, Davies RG, Lister NL, Sandhu SK, Rubin MA, Risbridger GP, Taylor RA, Rickman DS, Horvath LG, Daly RJ
Neoplasia 2019 Apr;21(4):389-400
PMID 30901730
 
Synergistic inhibition effect of TNIK inhibitor KY-05009 and receptor tyrosine kinase inhibitor dovitinib on IL-6-induced proliferation and Wnt signaling pathway in human multiple myeloma cells
Lee Y, Jung JI, Park KY, Kim SA, Kim J
Oncotarget 2017 Jun 20;8(25):41091-41101
PMID 28467797
 
Epigenetic regulation of traf2- and Nck-interacting kinase (TNIK) in polycystic ovary syndrome
Li D, Jiao J, Zhou YM, Wang XX
Am J Transl Res 2015 Jun 15;7(6):1152-60
PMID 26279758
 
The transcriptional coactivator WBP2 primes triple-negative breast cancer cells for responses to Wnt signaling via the JNK/Jun kinase pathway
Li Z, Lim SK, Liang X, Lim YP
J Biol Chem 2018 Dec 28;293(52):20014-20028
PMID 30442712
 
The kinase TNIK is an essential activator of Wnt target genes
Mahmoudi T, Li VS, Ng SS, Taouatas N, Vries RG, Mohammed S, Heck AJ, Clevers H
EMBO J 2009 Nov 4;28(21):3329-40
 
TNIK inhibition abrogates colorectal cancer stemness
Masuda M, Uno Y, Ohbayashi N, Ohata H, Mimata A, Kukimoto-Niino M, Moriyama H, Kashimoto S, Inoue T, Goto N, Okamoto K, Shirouzu M, Sawa M, Yamada T
Nat Commun 2016 Aug 26;7:12586
PMID 27562646
 
CD27 signaling on chronic myelogenous leukemia stem cells activates Wnt target genes and promotes disease progression
Schürch C, Riether C, Matter MS, Tzankov A, Ochsenbein AF
J Clin Invest 2012 Feb;122(2):624-38
PMID 22232214
 
Traf2- and Nck-interacting kinase is essential for Wnt signaling and colorectal cancer growth
Shitashige M, Satow R, Jigami T, Aoki K, Honda K, Shibata T, Ono M, Hirohashi S, Yamada T
Cancer Res 2010 Jun 15;70(12):5024-33
PMID 20530691
 
NIK is a new Ste20-related kinase that binds NCK and MEKK1 and activates the SAPK/JNK cascade via a conserved regulatory domain
Su YC, Han J, Xu S, Cobb M, Skolnik EY
EMBO J 1997 Mar 17;16(6):1279-90
PMID 9135144
 
The Traf2- and Nck-interacting kinase as a putative effector of Rap2 to regulate actin cytoskeleton
Taira K, Umikawa M, Takei K, Myagmar BE, Shinzato M, Machida N, Uezato H, Nonaka S, Kariya K
J Biol Chem 2004 Nov 19;279(47):49488-96
PMID 15342639
 
Prognostic significance of Traf2- and Nck- interacting kinase (TNIK) in colorectal cancer
Takahashi H, Ishikawa T, Ishiguro M, Okazaki S, Mogushi K, Kobayashi H, Iida S, Mizushima H, Tanaka H, Uetake H, Sugihara K
BMC Cancer 2015 Oct 24;15:794
PMID 26499327
 
Regulation of glioma migration and invasion via modification of Rap2a activity by the ubiquitin ligase Nedd4-1
Wang L, Zhu B, Wang S, Wu Y, Zhan W, Xie S, Shi H, Yu R
Oncol Rep 2017 May;37(5):2565-2574
PMID 28405688
 
Genome-wide DNA methylation and gene expression patterns provide insight into polycystic ovary syndrome development
Wang XX, Wei JZ, Jiao J, Jiang SY, Yu DH, Li D
Oncotarget 2014 Aug 30;5(16):6603-10
PMID 25051372
 
The essential role of TNIK gene amplification in gastric cancer growth
Yu DH, Zhang X, Wang H, Zhang L, Chen H, Hu M, Dong Z, Zhu G, Qian Z, Fan J, Su X, Xu Y, Zheng L, Dong H, Yin X, Ji Q, Ji J
Oncogenesis 2014 Mar 17;3:e93
PMID 24637493
 
TNIK serves as a novel biomarker associated with poor prognosis in patients with pancreatic cancer
Zhang Y, Jiang H, Qin M, Su X, Cao Z, Wang J
Tumour Biol 2016 Jan;37(1):1035-40
PMID 26269113
 

Citation

This paper should be referenced as such :
Cassaro A
TNIK (TRAF2 and NCK interacting kinase);
Atlas Genet Cytogenet Oncol Haematol. in press
On line version : http://AtlasGeneticsOncology.org/Genes/TNIKID43532ch3q26.html



Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 2 ]
  PRKCI/TNIK (3q26)
t(3;6)(q26;q25) TNIK/MTHFD1L


External links

Nomenclature
HGNC (Hugo)TNIK   30765
Cards
AtlasTNIKID43532ch3q26
Entrez_Gene (NCBI)TNIK  23043  TRAF2 and NCK interacting kinase
AliasesMRT54
GeneCards (Weizmann)TNIK
Ensembl hg19 (Hinxton)ENSG00000154310 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000154310 [Gene_View]  ENSG00000154310 [Sequence]  chr3:171058414-171460405 [Contig_View]  TNIK [Vega]
ICGC DataPortalENSG00000154310
TCGA cBioPortalTNIK
AceView (NCBI)TNIK
Genatlas (Paris)TNIK
WikiGenes23043
SOURCE (Princeton)TNIK
Genetics Home Reference (NIH)TNIK
Genomic and cartography
GoldenPath hg38 (UCSC)TNIK  -     chr3:171058414-171460405 -  3q26.2-q26.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TNIK  -     3q26.2-q26.31   [Description]    (hg19-Feb_2009)
GoldenPathTNIK - 3q26.2-q26.31 [CytoView hg19]  TNIK - 3q26.2-q26.31 [CytoView hg38]
ImmunoBaseENSG00000154310
Mapping of homologs : NCBITNIK [Mapview hg19]  TNIK [Mapview hg38]
OMIM610005   617028   
Gene and transcription
Genbank (Entrez)AB011123 AB017115 AF172264 AF172265 AF172266
RefSeq transcript (Entrez)NM_001161560 NM_001161561 NM_001161562 NM_001161563 NM_001161564 NM_001161565 NM_001161566 NM_015028
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TNIK
Alternative Splicing GalleryENSG00000154310
Gene ExpressionTNIK [ NCBI-GEO ]   TNIK [ EBI - ARRAY_EXPRESS ]   TNIK [ SEEK ]   TNIK [ MEM ]
Gene Expression Viewer (FireBrowse)TNIK [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)23043
GTEX Portal (Tissue expression)TNIK
Human Protein AtlasENSG00000154310-TNIK [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UKE5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UKE5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UKE5
Splice isoforms : SwissVarQ9UKE5
PhosPhoSitePlusQ9UKE5
Domaine pattern : Prosite (Expaxy)CNH (PS50219)    PROTEIN_KINASE_ATP (PS00107)    PROTEIN_KINASE_DOM (PS50011)    PROTEIN_KINASE_ST (PS00108)   
Domains : Interpro (EBI)CNH_dom    Kinase-like_dom_sf    Prot_kinase_dom    Protein_kinase_ATP_BS    Ser/Thr_kinase_AS   
Domain families : Pfam (Sanger)CNH (PF00780)    Pkinase (PF00069)   
Domain families : Pfam (NCBI)pfam00780    pfam00069   
Domain families : Smart (EMBL)CNH (SM00036)  S_TKc (SM00220)  
Conserved Domain (NCBI)TNIK
DMDM Disease mutations23043
Blocks (Seattle)TNIK
PDB (RSDB)2X7F    5AX9    5CWZ    5D7A    6RA7   
PDB Europe2X7F    5AX9    5CWZ    5D7A    6RA7   
PDB (PDBSum)2X7F    5AX9    5CWZ    5D7A    6RA7   
PDB (IMB)2X7F    5AX9    5CWZ    5D7A    6RA7   
Structural Biology KnowledgeBase2X7F    5AX9    5CWZ    5D7A    6RA7   
SCOP (Structural Classification of Proteins)2X7F    5AX9    5CWZ    5D7A    6RA7   
CATH (Classification of proteins structures)2X7F    5AX9    5CWZ    5D7A    6RA7   
SuperfamilyQ9UKE5
Human Protein Atlas [tissue]ENSG00000154310-TNIK [tissue]
Peptide AtlasQ9UKE5
HPRD18206
IPIIPI00145805   IPI00218901   IPI00218902   IPI00514275   IPI00218904   IPI00218906   IPI00218907   IPI00943704   IPI00789304   IPI00946842   
Protein Interaction databases
DIP (DOE-UCLA)Q9UKE5
IntAct (EBI)Q9UKE5
FunCoupENSG00000154310
BioGRIDTNIK
STRING (EMBL)TNIK
ZODIACTNIK
Ontologies - Pathways
QuickGOQ9UKE5
Ontology : AmiGO"positive regulation of protein phosphorylation  protein kinase activity  protein serine/threonine kinase activity  protein serine/threonine kinase activity  protein binding  ATP binding  nucleus  nucleoplasm  cytoplasm  cytoplasm  cytosol  cytoskeleton  protein phosphorylation  cytoskeleton organization  activation of JNKK activity  activation of JNKK activity  Wnt signaling pathway  apical plasma membrane  signal transduction by protein phosphorylation  microvillus assembly  stress-activated protein kinase signaling cascade  actin cytoskeleton reorganization  activation of protein kinase activity  intracellular signal transduction  protein autophosphorylation  neuron projection morphogenesis  regulation of dendrite morphogenesis  recycling endosome  extracellular exosome  protein localization to plasma membrane  presynapse  glutamatergic synapse  postsynaptic density, intracellular component"  
Ontology : EGO-EBI"positive regulation of protein phosphorylation  protein kinase activity  protein serine/threonine kinase activity  protein serine/threonine kinase activity  protein binding  ATP binding  nucleus  nucleoplasm  cytoplasm  cytoplasm  cytosol  cytoskeleton  protein phosphorylation  cytoskeleton organization  activation of JNKK activity  activation of JNKK activity  Wnt signaling pathway  apical plasma membrane  signal transduction by protein phosphorylation  microvillus assembly  stress-activated protein kinase signaling cascade  actin cytoskeleton reorganization  activation of protein kinase activity  intracellular signal transduction  protein autophosphorylation  neuron projection morphogenesis  regulation of dendrite morphogenesis  recycling endosome  extracellular exosome  protein localization to plasma membrane  presynapse  glutamatergic synapse  postsynaptic density, intracellular component"  
REACTOMEQ9UKE5 [protein]
REACTOME PathwaysR-HSA-2559580 [pathway]   
NDEx NetworkTNIK
Atlas of Cancer Signalling NetworkTNIK
Wikipedia pathwaysTNIK
Orthology - Evolution
OrthoDB23043
GeneTree (enSembl)ENSG00000154310
Phylogenetic Trees/Animal Genes : TreeFamTNIK
HOGENOMQ9UKE5
Homologs : HomoloGeneTNIK
Homology/Alignments : Family Browser (UCSC)TNIK
Gene fusions - Rearrangements
Fusion : MitelmanPRKCI/TNIK [3q26.2/3q26.2]  [t(3;3)(q26;q26)]  
Fusion : MitelmanTNIK/MTHFD1L [3q26.2/6q25.1]  [t(3;6)(q26;q25)]  
Fusion PortalPRKCI 3q26.2 TNIK 3q26.2 BRCA
Fusion PortalTNIK 3q26.2 MTHFD1L 6q25.1 BRCA
Fusion : Fusion_HubBAI3--TNIK    CLIP1--TNIK    CPNE4--TNIK    CWC27--TNIK    EPHA3--TNIK    FNDC3B--TNIK    GPR156--TNIK    IFT80--TNIK    LOC595101--TNIK    PRKCI--TNIK    PTPRG--TNIK    SKIL--TNIK    SLC2A2--TNIK    SMPDL3A--TNIK    STAB1--TNIK   
TNIK--CGRRF1    TNIK--DGCR8    TNIK--DSCAML1    TNIK--HMGB1    TNIK--KCNMB2    TNIK--LDLRAD3    TNIK--MTHFD1L    TNIK--NCEH1    TNIK--RNF8    TNIK--SPATA16    TNIK--STXBP5L    TNIK--TMEM66    TNIK--TRA2B    TOP1--TNIK   
Fusion : QuiverTNIK
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTNIK [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TNIK
dbVarTNIK
ClinVarTNIK
1000_GenomesTNIK 
Exome Variant ServerTNIK
ExAC (Exome Aggregation Consortium)ENSG00000154310
GNOMAD BrowserENSG00000154310
Varsome BrowserTNIK
Genetic variants : HAPMAP23043
Genomic Variants (DGV)TNIK [DGVbeta]
DECIPHERTNIK [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTNIK 
Mutations
ICGC Data PortalTNIK 
TCGA Data PortalTNIK 
Broad Tumor PortalTNIK
OASIS PortalTNIK [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTNIK  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTNIK
Mutations and Diseases : HGMDTNIK
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TNIK
DgiDB (Drug Gene Interaction Database)TNIK
DoCM (Curated mutations)TNIK (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TNIK (select a term)
intoGenTNIK
NCG5 (London)TNIK
Cancer3DTNIK(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610005    617028   
Orphanet11804   
DisGeNETTNIK
MedgenTNIK
Genetic Testing Registry TNIK
NextProtQ9UKE5 [Medical]
TSGene23043
GENETestsTNIK
Target ValidationTNIK
Huge Navigator TNIK [HugePedia]
snp3D : Map Gene to Disease23043
BioCentury BCIQTNIK
ClinGenTNIK
Clinical trials, drugs, therapy
Protein Interactions : CTD23043
Pharm GKB GenePA134893180
Clinical trialTNIK
Miscellaneous
canSAR (ICR)TNIK (select the gene name)
HarmonizomeTNIK
DataMed IndexTNIK
Probes
Litterature
PubMed57 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTNIK
EVEXTNIK
GoPubMedTNIK
iHOPTNIK
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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