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TRAF3 (TNF Receptor Associated Factor 3)

Identity

Other namesCAP-1
CD40bp
CRAF1
LAP1
HGNC (Hugo) TRAF3
Location 14q32.33
Location_base_pair Starts at 102313569 and ends at 102442381 bp from pter ( according to hg18-Mar_2006)  [Mapping]
Local_order between a potential gene LOC254285 and the gene encoding for amnionless protein

DNA/RNA

Description 13 exons spanning approximately 130 kb
Transcription Three alternatively spliced transcript variants encoding two distinct isoforms have been reported.

Protein

 
Description Isoform 1: 568 amino acids Isoform 2: 543 amino acids
Expression TRAF3 protein is detected in the skin, with a stronger intensity in more differentiated cells in the upper layers of the complex epithelium. TRAF3 is also expressed in the cartilage, in the cardiovascular system, in the trachea, in the salivary gland, in the liver, in the pancreas, in the prostate gland, in the pituitary gland. A gradient of TRAF3 expression appears to exist along the nephron, with progressively higher expression from proximal tubule to collecting duct. In the central nervous system, many but not most neurons in the cerebral cortex, basal ganglia, and brain stem contain at least low levels of TRAF3 protein. In contrast, almost no expression of TRAF3 is detected in the immune system.
Localisation mainly cytoplasmic
Function The TRAF family proteins act at least in part as adapter proteins that recruit other signaling molecules to ligand-bound TNF family receptors. TRAF3 was first described as a molecule that binds the cytoplasmic tail of CD40. Signaling through CD40 in B cells induces rescue from apoptosis, proliferation, differentiation, Ig production, class switching and expression of co-stimulatory molecules. Insights into the in vivo functions of TRAF3 have come from generation of mice deficient for TRAF3. These mice are depleted in all lineages of peripheral leucocytes, and die shortly after birth. However, B cells from TRAF3-/- upregulate CD23 and proliferate normally in response to CD40 ligand stimulation. Moreover, fetal liver cells from TRAF3 deficient mice can reconstitute the immune system of irradiated wild type mice, although isotype switching in response to T-dependent antigens is defective. Thus, TRAF3 is not required for CD40 signaling, but appears important in T cell-dependent immune responses. These effects of TRAF3 may be mediated through other TNF receptor family members : TRAF3 can bind directly to the cytosolic domains of CD27, CD30, LTbR, LMP-1, and also binds indirectly TNF-R2.
Homology TRAF3 belongs to a family of six proteins (TRAF1 to 6), sharing a common structural organization. TRAF3 counterparts are found in mouse, fly and worm.

Implicated in

Disease Hodgkin disease, Lymphomas.
  

External links

Nomenclature
HGNC (Hugo)TRAF3   12033
Entrez_Gene (NCBI)TRAF3  7187  TNF receptor-associated factor 3
Cards
AtlasTRAF3ID271
GeneCards (Weizmann)TRAF3
Ensembl (Hinxton)ENSG00000131323 [Gene_View]  TRAF3 [Vega]
AceView (NCBI)TRAF3
Genatlas (Paris)TRAF3
euGene (Indiana)7187
SOURCE (Stanford)NM_003300 NM_145725 NM_145726
Gene Expression (Array Express) ENSG00000131323
Genomic and cartography
GoldenPath (UCSC)TRAF3  -  14q32.33   chr14:102313569-102442381 +  14q32.32   [Description]    (hg18-Mar_2006)
EnsemblTRAF3 - 14q32.32 [CytoView]
Mapping of homologs : NCBITRAF3 [Mapview]
OMIM601896   
Gene and transcription
Gene : Genbank (Entrez)AF110908 AK303172 BC075086 BC075087 BX247977
Reference sequence (RefSeq transcript) :SRSNM_003300 NM_145725 NM_145726
Reference transcript : EntrezNM_003300 NM_145725 NM_145726
RefSeq genomic : SRSAC_000057 AC_000146 NC_000014 NT_026437 NW_001838115 NW_925561
RefSeq genomic : EntrezAC_000057 AC_000146 NC_000014 NT_026437 NW_001838115 NW_925561
Consensus coding sequences : CCDS NCBITRAF3
Cluster EST : UnigeneHs.510528 [ SRS ] Hs.510528 [ NCBI ]
Alternative Splicing : Fast-db (Paris)6056
Protein : pattern, domain, 3D structure
Protein : UniProt/SwissProtQ13114 (SRS) Q13114 (Expasy) Q13114 (Uniprot)
With graphics : InterProQ13114
Splice isoforms : VarSplice FASTAQ13114(VarSplice FASTA)
Domaine pattern : Prosite (SRS)MATH (PS50144)    ZF_RING_1 (PS00518)    ZF_RING_2 (PS50089)    ZF_TRAF (PS50145)   
Domain pattern : Prosite (Expaxy)MATH (PS50144)    ZF_RING_1 (PS00518)    ZF_RING_2 (PS50089)    ZF_TRAF (PS50145)   
Domains : Interpro (SRS)MATH    TNF_recpt_TRAF    TRAF-like    TRAF-type    Znf_RING    Znf_RING_CS    Znf_TRAF   
Domains : Interpro (EBI)MATH    TNF_recpt_TRAF    TRAF-like    TRAF-type    Znf_RING    Znf_RING_CS    Znf_TRAF   
Related proteins : CluSTrQ13114
Domain families : Pfam SRSMATH (PF00917)    zf-TRAF (PF02176)   
Domain families : Pfam SangerMATH (PF00917)    zf-TRAF (PF02176)   
Domain families : Pfam NCBIpfam00917    pfam02176   
Domain families : Smart EMBLMATH (SM00061)  RING (SM00184)  
Blocks (Seattle)Q13114
Crystal structure of protein : PDB SRS1FLK    1FLL    1KZZ    1L0A    1RF3    1ZMS    2ECY    2GKW   
Crystal structure of protein : PDBSum1FLK    1FLL    1KZZ    1L0A    1RF3    1ZMS    2ECY    2GKW   
Crystal structure of protein : IMB1FLK    1FLL    1KZZ    1L0A    1RF3    1ZMS    2ECY    2GKW   
Crystal structure of protein : PDB RSDB1FLK    1FLL    1KZZ    1L0A    1RF3    1ZMS    2ECY    2GKW   
HPRD03539
Protein Interaction databases
DIP (DOE-UCLA)Q13114
IntAct (EBI)Q13114
Polymorphism : SNP, mutations, diseases
Single Nucleotide Polymorphism (SNP) : dbSNP NCBITRAF3
SNP : GeneSNP UtahTRAF3
SNP : HGBaseTRAF3
Genetic variants : HAPMAPTRAF3
Somatic Mutations in Cancer : COSMICTRAF3 
Mutations and Diseases : HGMDTRAF3
Hereditary diseases : OMIM601896   
Hereditary diseases : GENETests601896   
Diseases : Genetic AssociationTRAF3
General knowledge
Homologs : HomoloGeneTRAF3
Homology/Alignments : Family Browser UCSCTRAF3
Phylogenetic Trees/Animal Genes : TreeFamTRAF3
Chemical/Protein Interactions : CTD7187
Keywords Ontology : AmiGOsignal transducer activity  protein binding  cytoplasm  induction of apoptosis  signal transduction  zinc ion binding  regulation of apoptosis  metal ion binding  
Keywords Ontology : EGO-EBIsignal transducer activity  protein binding  cytoplasm  induction of apoptosis  signal transduction  zinc ion binding  regulation of apoptosis  metal ion binding  
Pathways : BIOCARTACD40L Signaling Pathway [Genes]    TACI and BCMA stimulation of B cell immune responses. [Genes]    TNFR2 Signaling Pathway [Genes]   
Pathways : KEGG
Other databases
Probes
Probes : ImagenesTRAF3 Related clones (RZPD - Berlin)
Literature
PubMed100 Pubmed reference(s) in Entrez
PubGeneTRAF3

Bibliography

Involvement of CRAF1, a relative of TRAF, in CD40 signaling.
Cheng G, Cleary AM, Ye ZS, Hong DI, Lederman S, Baltimore D
Science (New York, N.Y.). 1995 ; 267 (5203) : 1494-1498.
PMID 7533327
 
Targeted disruption of TRAF3 leads to postnatal lethality and defective T-dependent immune responses.
Xu Y, Cheng G, Baltimore D
Immunity. 1996 ; 5 (5) : 407-415.
PMID 8934568
 
Immunohistochemical analysis of in vivo patterns of TRAF-3 expression, a member of the TNF receptor-associated factor family.
Krajewski S, Zapata JM, Krajewska M, VanArsdale T, Shabaik A, Gascoyne RD, Reed JC
Journal of immunology (Baltimore, Md. : 1950). 1997 ; 159 (12) : 5841-5852.
PMID 9550380
 
A single gene for human TRAF-3 at chromosome 14q32.3 encodes a variety of mRNA species by alternative polyadenylation, mRNA splicing and transcription initiation.
van Eyndhoven WG, Frank D, Kalachikov S, Cleary AM, Hong DI, Cho E, Nasr S, Perez AJ, Mackus WJ, Cayanis E, Wellington S, Fischer SG, Warburton D, Lederman S
Molecular immunology. 1998 ; 35 (18) : 1189-1206.
PMID 10199393
 
Epstein-Barr virus and a cellular signaling pathway in lymphomas from immunosuppressed patients.
Liebowitz D
The New England journal of medicine. 1998 ; 338 (20) : 1413-1421.
PMID 9580648
 
Hodgkin disease: pharmacologic intervention of the CD40-NF kappa B pathway by a protease inhibitor.
Annunziata CM, Safiran YJ, Irving SG, Kasid UN, Cossman J
Blood. 2000 ; 96 (8) : 2841-2848.
PMID 11023520
 
Membrane localization of TRAF 3 enables JNK activation.
Dadgostar H, Cheng G
The Journal of biological chemistry. 2000 ; 275 (4) : 2539-2544.
PMID 10644711
 
Tumor necrosis factor receptor-associated factors (TRAFs).
Bradley JR, Pober JS
Oncogene. 2001 ; 20 (44) : 6482-6491.
PMID 11607847
 
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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Contributor(s)

Written08-2002Valérie Kedinger
IGBMC - BP 10142, 67404 ILLKIRCH cedex, France

Citation

This paper should be referenced as such :
Kedinger V . TRAF3 (TNF Receptor Associated Factor 3). Atlas Genet Cytogenet Oncol Haematol. August 2002 .
URL : http://AtlasGeneticsOncology.org/Genes/TRAF3ID271.html

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indexed on : Sat Feb 27 10:48:59 CET 2010

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