VMP1 (vacuole membrane protein 1)

2011-11-01   Alejandro Ropolo , Andrea Lo Ré , María Inés Vaccaro 

Molecular Pathophysiology Lab, School of Pharmacie, Biochemistry, University of Buenos Aires, Argentina

Identity

HGNC
LOCATION
17q23.1
LOCUSID
ALIAS
EPG3,TANGO5,TMEM49
FUSION GENES

DNA/RNA

Atlas Image
Genomic organization of the VMP1/TMEM49 gene.

Description

12 exons, spans approximately 133 kb of genomic DNA in the centromere-to-telomere orientation. The translation initiation codon is located to exon 2, and the stop codon to exon 12.

Transcription

mRNA of 2,17 kb.

Proteins

Atlas Image
Schematic representation of VMP1 protein and localization of transmembrane domains.

Description

The pancreatitis-associated protein vacuole membrane protein 1 (VMP1) is a transmembrane protein of 406 amino-acid length containing 6 putative transmembrane domains and with no known homologues in yeast.

Expression

VMP1 was characterized because is not constitutively expressed in pancreatic acinar cells and it is highly activated early during experimental acute pancreatitis in acinar cells.

Localisation

Autophagosomal membrane.

Function

VMP1 is an autophagy-related membrane protein. VMP1 expression triggers autophagy, even under nutrient-replete conditions. VMP1 is required for autophagosome development through interaction with Beclin1. Recently, it has been demonstrated that participate in a novel selective form of autophagy, called zymophagy, mediated by VMP1-USP9x-p62 pathway during acute pancreatitis.

Implicated in

Entity name
Pancreatic cancer
Disease
Pancreatic ductal adenocarcinoma is one of the most aggressive human malignancies with a 2-3% 5-year survival rate. This is due to both the aggressive nature of the disease and the lack of specific symptoms and early-detection tools. It is relatively refractory to traditional cytotoxic agents and radiotherapy. Gemcitabine, the standard chemotherapy agent for the treatment of pancreatic cancer, induces autophagy of cancer cells and that this process mediates the cell death-promoting activity of this compound. Early induction of autophagy by gemcitabine leads to cancer cell death and this cellular process is mediated by the activation of VMP1 expression. In PANC-1 and MIAPaCa-2 cells the inhibition of autophagy significantly reduced the percentage of dead cells in response to gemcitabine. In addition, gemcitabine promoted early VMP1 expression, and downregulation of VMP1 expression significantly reduced cell death.
Entity name
Acute pancreatitis
Disease
VMP1 was characterized because is not constitutively expressed in pancreatic acinar cells and it is highly activated early during experimental acute pancreatitis in acinar cells. VMP1 is an autophagy-related membrane protein involved in the initial steps of the mammalian cell autophagic process. VMP1 is a transmembrane protein that co-localizes with LC3, a marker of the autophagosomes, in pancreas tissue undergoing pancreatitis-induced autophagy. VMP1 interacts with with Beclin1, a mammalian autophagy initiator, to start autophagosome formation. We developed the ElaI-VMP1 mouse in which acinar cell-specific constitutive expression of a VMP1-EGFP chimera induces the formation of autophagosomes. Upon CCK-R hyperstimulation, wild type mice developed acute pancreatitis with high amylase and lipase serum levels. On the contrary, enzymatic levels in cerulein-treated ElaI-VMP1 mice were significantly lower compared to wild type mice. Consistently, ElaI-VMP1 mouse pancreata showed remarkably less macroscopic evidence of acute pancreatitis compared to wild type animals, which showed marked edema and hemorrhage. Histological analyses displayed a high degree of necrosis as well as infiltration in wild type pancreata with acute pancreatitis. In contrast, neither necrosis nor significant inflammation was seen in cerulein-treated ElaI-VMP1 mice. ElaIVMP1 mice showed secretory granules with normal ultrastructural characteristics CCK-R hyperstimulation in wild type animals induced a markedly altered distribution pattern of the secretory granules. Acinar cells lose their polarity, which results in the relocation of zymogen granules to the basolateral membrane. These alterations in vesicular traffic are known to occur in acinar cells during acute pancreatitis and upon hyperstimulation of their CCK-R with cerulein. ElaI-VMP1 mice subjected to CCK-R hyperstimulation revealed that acinar cells preserve their structure and polarity with negligible or no alteration in vesicular transport. Surprisingly, in pancreata from cerulein-treated ElaI-VMP1 mice, we observed autophagosomes containing zymogen granules displaying a distinct localization to the apical area of the acinar cell. VMP1, the ubiquitin-protease USP9x, and the ubiquitin-binding protein p62 mediate this process. Moreover, VMP1 interacts with USP9x, indicating that there is a close cooperation between the autophagy pathway and the ubiquitin recognition machinery required for selective autophagosome formation. We have coined the term "zymophagy" to refer to this process. Zymophagy is activated by experimental pancreatitis and by acute pancreatitis in humans. Furthermore, zymophagy has pathophysiological relevance by controlling pancreatitis-induced intracellular zymogen activation and helping to prevent cell death. This new selective autophagy is activated in pancreatic acinar cells during pancreatitis-induced vesicular transport alteration to sequester and degrade potentially deleterious activated zymogen granules.
Atlas Image
Confocal microscopy of AR42J cell transfected with pEGFP-VMP1.
Entity name
Diabetes
Disease
Experimental diabetes activates VMP1 expression and autophagy in pancreas beta cells as a direct response to streptozotocin (STZ). VMP1 mRNA expression is activated after STZ treatment by islet beta cells. Electron microscopy shows chromatin aggregation and autophagy morphology that was confirmed by LC3 expression and LC3-VMP1 co-localization. Apoptotic cell death and the reduction of beta cell pool are evident after 24h treatment, while VMP1 is still expressed in the remaining cells. VMP1-Beclin1 colocalization in pancreas tissue from STZ-treated rats suggests that VMP1-Beclin1 interaction is involved in the autophagic process activation during experimental diabetes. Pancreas beta cells trigger VMP1 expression and autophagy during the early cellular events in response to experimental diabetes.

Bibliography

Pubmed IDLast YearTitleAuthors
117859472002Cloning and expression of the rat vacuole membrane protein 1 (VMP1), a new gene activated in pancreas with acute pancreatitis, which promotes vacuole formation.Dusetti NJ et al
211731552011Zymophagy, a novel selective autophagy pathway mediated by VMP1-USP9x-p62, prevents pancreatic cell death.Grasso D et al
190774582009Autophagy and VMP1 expression are early cellular events in experimental diabetes.Grasso D et al
153678892004Expression of vacuole membrane protein 1 (VMP1) in spontaneous chronic pancreatitis in the WBN/Kob rat.Jiang PH et al
202998192010Gemcitabine induces the VMP1-mediated autophagy pathway to promote apoptotic death in human pancreatic cancer cells.Pardo R et al
179402792007The pancreatitis-induced vacuole membrane protein 1 triggers autophagy in mammalian cells.Ropolo A et al
182530862008A novel mammalian trans-membrane protein reveals an alternative initiation pathway for autophagy.Vaccaro MI et al
187141762008Autophagy and pancreas disease.Vaccaro MI et al

Other Information

Locus ID:

NCBI: 81671
MIM: 611753
HGNC: 29559
Ensembl: ENSG00000062716

Variants:

dbSNP: 81671
ClinVar: 81671
TCGA: ENSG00000062716
COSMIC: VMP1

RNA/Proteins

Gene IDTranscript IDUniprot
ENSG00000062716ENST00000262291Q96GC9
ENSG00000062716ENST00000585847K7EL74
ENSG00000062716ENST00000586245K7EMN6
ENSG00000062716ENST00000587259K7EK01
ENSG00000062716ENST00000587945K7EM96
ENSG00000062716ENST00000589823K7ELS2
ENSG00000062716ENST00000591315K7EMI0
ENSG00000062716ENST00000591877K7EPE7
ENSG00000062716ENST00000592106K7ENU2
ENSG00000062716ENST00000592619K7EL46
ENSG00000062716ENST00000593168K7EL93

Expression (GTEx)

0
50
100
150

Pathways

PathwaySourceExternal ID
Autophagy - animalKEGGko04140
Autophagy - animalKEGGhsa04140

Protein levels (Protein atlas)

Not detected
Low
Medium
High

References

Pubmed IDYearTitleCitations
211731552011Zymophagy, a novel selective autophagy pathway mediated by VMP1-USP9x-p62, prevents pancreatic cell death.79
179402792007The pancreatitis-induced vacuole membrane protein 1 triggers autophagy in mammalian cells.76
221441092011Hypoxia-inducible microRNA-210 augments the metastatic potential of tumor cells by targeting vacuole membrane protein 1 in hepatocellular carcinoma.63
233162802013The VMP1-Beclin 1 interaction regulates autophagy induction.57
214672642011Transcriptional consequences of genomic structural aberrations in breast cancer.40
202998192010Gemcitabine induces the VMP1-mediated autophagy pathway to promote apoptotic death in human pancreatic cancer cells.39
288903352017The ER-Localized Transmembrane Protein EPG-3/VMP1 Regulates SERCA Activity to Control ER-Isolation Membrane Contacts for Autophagosome Formation.29
225359562012Novel AKT1-GLI3-VMP1 pathway mediates KRAS oncogene-induced autophagy in cancer cells.26
185507982008Vacuole membrane protein 1 is an endoplasmic reticulum protein required for organelle biogenesis, protein secretion, and development.21
278615942016VMP1 Establishes ER-Microdomains that Regulate Membrane Contact Sites and Autophagy.21

Citation

Alejandro Ropolo ; Andrea Lo Ré ; María Inés Vaccaro

VMP1 (vacuole membrane protein 1)

Atlas Genet Cytogenet Oncol Haematol. 2011-11-01

Online version: http://atlasgeneticsoncology.org/gene/50079/vmp1