Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

WFDC1 (WAP four-disulfide core domain 1)

Identity

Other namesps20
HGNC WFDC1
Location 16q24.1

DNA/RNA

Description The gene encompasses 35 kb of DNA; 7 exons.
Transcription 1366 nucleotides mRNA; 660 bp open reading frame.

Protein

 
  Representation of the position of the conserved cysteines for the category of "four-disulfide core" domain and the location of the signature pattern for such a domain in the human WFDC1 amino acid sequence.
Description 220 amino acids; 24 kDa protein. Like rat ps20, human ps20 protein contains a WAP signature domain.
Expression Widely expressed, absent in thymus.
Function The rat homologue of ps20 was originally identified as a secreted growth inhibitor. These growth regulatory effects and the cell phenotypic properties in vitro, suggest that ps20 may function as a mediator of stromal-epithelial interactions and contribute to the maintenance of tissue homeostasis. The ps20 protein is assumed to function as a protease inhibitor. In vitro studies indicate that exogeneous addition of ps20 protein stimulates endothelial cell migration, and promotes angiogenesis and tumour growth in a xenograft model of prostate cancer.
Homology The human WFDC1 protein shares approximately 86% and 88% identity with the rat and mouse proteins, respectively. WFDC1 is related to a family of human proteins that also have homology with WAP. The WFDC1 gene organization presents similarities with that of the KAL gene, which extends on 210 kb of DNA, includes 14 exons and is the largest gene in the WAP signature domain family.

Mutations

Note Although WFDC1 was mapped to human chromosome 16q24, an area of frequent loss of heterozygosity (LOH) in prostate and hepatocellular carcinomas, no tumour-associated mutations were identified in the coding region of WFDC1 in these cancer types. Mutations in WFDC1 gene resulting in Gly9Asp, Pro211Ser and Lys217Arg substitutions have been found at low frequency in the stroma of breast carcinomas. One mutation resulting in a Pro167Ser substitution has been identified in the epithelium of breast carcinoma.

Implicated in

Disease Prostate cancer
Oncogenesis WFDC1 is significantly down-regulated in prostate cancer making it a candidate tumour suppressor gene. However, WFDC1 seems predominantly expressed in the stroma of normal prostate. In tumors, decreased stromal WFDC1 expression has been associated with increased epithelial WFDC1 expression. This correlate with shorter recurrence-free survival times and may indicate progression to a more aggressive epithelial phenotype and an epithelial mesenchymal transition process.
  

External links

Nomenclature
HGNCWFDC1   15466
Entrez_GeneWFDC1  58189  WAP four-disulfide core domain 1
Cards
AtlasWFDC1ID424
GeneCardsWFDC1
EnsemblWFDC1 [Search_View]   ENSG00000103175 [Gene_View]
GenatlasWFDC1
GeneLynxWFDC1
eGenomeWFDC1
euGene58189
Genomic and cartography
GoldenPathWFDC1  -  16q24.1   chr16:82885902-82920951 +  16q24.3   [Description]    (hg18-Mar_2006)
EnsemblWFDC1 - 16q24.3 [CytoView]
NCBIMapview
OMIMDisease map [OMIM]
HomoloGeneWFDC1
Gene and transcription
GenbankAF169631 [ ENTREZ ]
GenbankAF302109 [ ENTREZ ]
GenbankAK075061 [ ENTREZ ]
GenbankAL713785 [ ENTREZ ]
GenbankBC029159 [ ENTREZ ]
RefSeqNM_021197 [ SRS ]    NM_021197 [ ENTREZ ]
RefSeqAC_000059 [ SRS ]    AC_000059 [ ENTREZ ]
RefSeqAC_000148 [ SRS ]    AC_000148 [ ENTREZ ]
RefSeqNC_000016 [ SRS ]    NC_000016 [ ENTREZ ]
RefSeqNT_010498 [ SRS ]    NT_010498 [ ENTREZ ]
RefSeqNW_001838328 [ SRS ]    NW_001838328 [ ENTREZ ]
RefSeqNW_926528 [ SRS ]    NW_926528 [ ENTREZ ]
AceViewWFDC1 AceView - NCBI
UnigeneHs.36688 [ SRS ]    Hs.36688 [ NCBI ]     HS36688 [ spliceNest ]
Fast-db12039 (alternative variants)
Protein : pattern, domain, 3D structure
SwissProtQ9HC57 [ SRS]    Q9HC57 [ EXPASY ]     Q9HC57 [ INTERPRO ]     Q9HC57 [ UNIPROT ]
PrositePS00317 4_DISULFIDE_CORE [ SRS ]    PS00317 4_DISULFIDE_CORE [ Expasy ]
InterproIPR015874 4-disulphide_core [ SRS ]    IPR015874 4-disulphide_core [ EBI ]
InterproIPR008197 Whey_acidic_protein_4-diS_core [ SRS ]    IPR008197 Whey_acidic_protein_4-diS_core [ EBI ]
CluSTrQ9HC57
PfamPF00095 WAP [ SRS ]    PF00095 WAP [ Sanger ]    pfam00095 [ NCBI-CDD ]
SmartSM00217 WAP [EMBL]
BlocksQ9HC57
HPRD05614
Protein Interaction databases
DIPQ9HC57
IntActQ9HC57
Polymorphism : SNP, mutations, diseases
OMIM605322    [ map ]   
GENECLINICS605322
SNPWFDC1 [dbSNP-NCBI]  
SNPNM_021197 [SNP-NCI]  
SNPWFDC1 [GeneSNPs - Utah]  WFDC1] [HGBASE - SRS]
HAPMAPWFDC1 [HAPMAP]  
HGMDWFDC1
General knowledge
Family BrowserWFDC1 [UCSC Family Browser]
SOURCENM_021197
SMDHs.36688
SAGEHs.36688
GOmolecular_function [Amigo]  molecular_function
GOserine-type endopeptidase inhibitor activity [Amigo]  serine-type endopeptidase inhibitor activity
GOextracellular region [Amigo]  extracellular region
GOextracellular space [Amigo]  extracellular space
GOnegative regulation of cell growth [Amigo]  negative regulation of cell growth
PubGeneWFDC1
TreeFamWFDC1
CTD58189 [Comparative ToxicoGenomics Database]
Other databases
Probes
ProbeWFDC1 Related clones (RZPD - Berlin)
PubMed
PubMed9 Pubmed reference(s) in LocusLink

Bibliography

Responses of NBT-II bladder carcinoma cells to conditioned medium from normal fetal urogenital sinus.
Rowley DR, Tindall DJ
Cancer research. 1987 ; 47 (11) : 2955-2960.
PMID 3567912
 
Characterization of a fetal urogenital sinus mesenchymal cell line U4F: secretion of a negative growth regulatory activity.
Rowley DR
In vitro cellular & developmental biology : journal of the Tissue Culture Association. 1992 ; 28A (1) : 29-38.
PMID 1730568
 
Purification of a novel protein (ps20) from urogenital sinus mesenchymal cells with growth inhibitory properties in vitro.
Rowley DR, Dang TD, Larsen M, Gerdes MJ, McBride L, Lu B
The Journal of biological chemistry. 1995 ; 270 (37) : 22058-22065.
PMID 7665628
 
Molecular cloning and expression of ps20 growth inhibitor. A novel WAP-type four-disulfide core domain protein expressed in smooth muscle.
Larsen M, Ressler SJ, Lu B, Gerdes MJ, McBride L, Dang TD, Rowley DR
The Journal of biological chemistry. 1998 ; 273 (8) : 4574-4584.
PMID 9468514
 
The WFDC1 gene encoding ps20 localizes to 16q24, a region of LOH in multiple cancers.
Larsen M, Ressler SJ, Gerdes MJ, Lu B, Byron M, Lawrence JB, Rowley DR
Mammalian genome : official journal of the International Mammalian Genome Society. 2000 ; 11 (9) : 767-773.
PMID 10967136
 
Frequent somatic mutations in PTEN and TP53 are mutually exclusive in the stroma of breast carcinomas.
Kurose K, Gilley K, Matsumoto S, Watson PH, Zhou XP, Eng C
Nature genetics. 2002 ; 32 (3) : 355-357.
PMID 12379854
 
Analysis of alterations of WFDC1, a new putative tumour suppressor gene, in hepatocellular carcinoma.
Saffroy R, Riou P, Soler G, Azoulay D, Emile JF, Debuire B, Lemoine A
European journal of human genetics : EJHG. 2002 ; 10 (4) : 239-244.
PMID 12032731
 
Promotion of angiogenesis by ps20 in the differential reactive stroma prostate cancer xenograft model.
McAlhany SJ, Ressler SJ, Larsen M, Tuxhorn JA, Yang F, Dang TD, Rowley DR
Cancer research. 2003 ; 63 (18) : 5859-5865.
PMID 14522910
 
Integration of high-resolution array comparative genomic hybridization analysis of chromosome 16q with expression array data refines common regions of loss at 16q23-qter and identifies underlying candidate tumor suppressor genes in prostate cancer.
Watson JE, Doggett NA, Albertson DG, Andaya A, Chinnaiyan A, van Dekken H, Ginzinger D, Haqq C, James K, Kamkar S, Kowbel D, Pinkel D, Schmitt L, Simko JP, Volik S, Weinberg VK, Paris PL, Collins C
Oncogene. 2004 ; 23 (19) : 3487-3494.
PMID 15007382
 
Decreased stromal expression and increased epithelial expression of WFDC1/ps20 in prostate cancer is associated with reduced recurrence-free survival.
McAlhany SJ, Ayala GE, Frolov A, Ressler SJ, Wheeler TM, Watson JE, Collins C, Rowley DR
The Prostate. 2004 ; 61 (2) : 182-191.
PMID 15305341
 
Molecular analysis of WFDC1/ps20 gene in prostate cancer.
Watson JE, Kamkar S, James K, Kowbel D, Andaya A, Paris PL, Simko J, Carroll P, McAlhany S, Rowley D, Collins C
The Prostate. 2004 ; 61 (2) : 192-199.
PMID 15305342
 
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written03-2003Raphael Saffroy, Antoinette Lemoine, Brigitte Debuire
Updated06-2005Raphael Saffroy, Antoinette Lemoine, Brigitte Debuire

Citation

This paper should be referenced as such :
Saffroy R, Lemoine A, Debuire B . WFDC1 (WAP four-disulfide core domain 1). Atlas Genet Cytogenet Oncol Haematol. March 2003 .
URL : http://AtlasGeneticsOncology.org/Genes/WFDC1ID424.html
Saffroy R, Lemoine A, Debuire B . WFDC1 (WAP four-disulfide core domain 1). Atlas Genet Cytogenet Oncol Haematol. June 2005 .
URL : http://AtlasGeneticsOncology.org/Genes/WFDC1ID424.html

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Aug 11 21:18:26 2008


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

j.l.huret@chu-poitiers.fr.