Atlas of Genetics and Cytogenetics in Oncology and Haematology

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Chromosome 16

Chromosome 16 : G-banding, diagram and R-banding - Claude Léonard, Jean-Loup Huret
Chromosome 16 diagrams ISCN 2009 - Courtesy Nicole Chia

Leukaemia     

t(1;16)(q11;q11)
t(1;16)(q12;q24)
t(3;16)(q21;q22)
t(3;16)(q27;p11)
t(3;16)(q27;p13)
t(4;16)(q26;p13)
t(5;16)(q33;q22)
t(8;16)(p11;p13) in treatment related leukemia
t(8;16)(p11;p13)
t(10;16)(q22;p13)
t(11;16)(q23;p13.3)
inv(16)(p13q22) in treatment related leukemia
del(16)(q22)
inv(16)(p13q22)
t(16;16)(p13;q22)
+16 or trisomy 16 (solely)
t(16;21)(q24;q22)
t(16;21)(p11;q22)

Solid Tumors     

t((7;16)(q33;p11)
t(12;13)(q14;q12)
t(11;16)(q13;p13)
t(12;16)(q13;p11)
t(12;16)(q13;p11)
t(12;16)(q13;p11)
t(12;15)(p13;q26)
t(16;17)(q22;p13)
t(16;21)(p11;q22)

Cancer prone diseases     

Hereditary diffuse gastric cancer (HDGC)
Rubinstein-Taybi syndrome (RTS)

All Genes by Location (Kb)
Chromosome 16 by location

Losses / Amplicons     

BONE/SOFT TISSUE

External links     

  • Chromosome 16 - HUGO Chromosomes
  • Chromosome 16 - GoldenPath - Santa Cruz
  • Chromosome 16 - Ensembl Project
  • Chromosome 16 - Map View - NCBI
  • Chromosome 16 - OMIM Gene map
  • Chromosome 16 - Genomic Variants
  • Chromosome 16 - HAPMAP Project
  • Chromosome 16 - Genome Channel - ORNL
  • Chromosome 16 - LaunchPad HGMIS
  • Chromosome 16 - Human Protein Atlas
  • Chromosome 16 - Array BAC clone - Roswell Park Cancer Institute
  • Chromosome 16 - Human BAC Resource (NCBI)
  • Chromosome 16 FISH-mapped BACs (CCAP)
  • Genetic Maps (CHLC)
  • YACs mapped by FISH (Bari)
  • PCP (Partial Chromosome Paints) (Bari)
  • Mouse homology - OMIM - NCBI
  • Chromosome 16 Cancer GeneWeb
  • Chromosome 16 GeneCards (Weizmann)
  • Human Proteomics Initiative (Expasy)

    • Genes

    Annotated genes
    Ordered by Name Ordered by Location
     Kb pter-qter
    ABCC1 16103.712 16p13.1
    CBFA2T3 88941.282 16q24
    CDH1 68771.254 16q22.1
    CDT1 88870.185 16q24.3
    CIITA 10971.038 16p13
    CREBBP 3777.539 16p13.3
    CYLD 50776.020 16q12.1
    EIF3C 28722.847 16p11.2
    FANCA 89804.810 16q24.3
    FBXO31 87362.943 16q24.2
    FUS 31191.470 16p11.2
    MAF 79630.369 16q22-q23
    MAPK3 30125.426 16p11.2
    MMP2 55514.444 16q13-q21
    MVP 29831.786 16p11.2
    NOL3 67207.838 16q22.1
    NQO1 69744.744 16q22.1
    PHLPP2 71678.830 16q22.2
    PLK1 23690.250 16p12.2
    RBL2 53504.717 16q12.2
    SOCS1 11348.273 16p13.13
    TSC2 2097.989 16p13.3
    USP7 8988.901 16p13.3
    WFDC1 84328.423 16q24.3
    WWOX 78133.603 16q23.3-q24.1
    ZFHX3 72831.184 16q22.3
    Other genes
    possibly implicated
    in cancer
    Ordered by Name Ordered by Location
     Kb pter-qter
    ABCA3 2326.593 16p13.3
    ABCC11 48200.940 16q12.1
    ABCC6 16243.990 16p13.1
    ACD 67691.415 16q22.1
    ACSM1 20634.680 16p12.3
    ADAMTS18 77316.822 16q23
    ADCY7 50300.461 16q12.1
    ALDOA 30077.143 16p11.2
    AMFR 56395.921 16q21
    ANKRD11 89351.298 16q24.3
    APRT 88875.999 16q24
    AQP8 25228.282 16p12
    ARHGAP17 24930.718 16p12.1
    ARL6IP1 18804.242 16p12-p11.2
    ATMIN 81074.129 16q23.2
    ATP2A1 28912.156 16p12.1
    ATP6V0C 2563.986 16p13.3
    AXIN1 337.439 16p13.3
    BANP 87985.037 16q24
    BCAR1 75262.934 16q23.1
    BCKDK 31119.747 16p11.2
    BCL7C 30899.117 16p11
    BFAR 14726.795 16p13.12
    BRD7 50352.940 16q12
    BTBD12 3631.218 16p13.3
    C16orf5 4560.740 16p13.3
    C16orf62 19590.045 16p12.3
    C1QTNF8 1138.225 16p13.3
    CACNA1H 1203.412 16p13.3
    CALB2 71392.625 16q22.2
    CCL17 57438.678 16q13
    CCL22 57392.696 16q13
    CCNF 2479.480 16p13.3
    CDH11 64981.410 16q22.1
    CDH15 89238.174 16q24.3
    CDH16 66942.058 16q22.1
    CDH5 66400.615 16q22.1
    CDH8 61687.421 16q22.1
    CDIPT 29869.681 16p11.2
    CDK10 89753.095 16q24
    CDR2 22358.023 16p12.3
    CES1 55844.457 16q22.2
    CFDP1 75327.614 16q22.2-q22.3
    CHMP1A 89712.423 16q24.3
    CHP2 23765.947 16p12.2
    CHST4 71560.060 16q22.2
    CHTF8 69151.912 16q22.1
    CIAPIN1 57462.099 16q13-q21
    CLDN6 3065.360 16p13.3
    CLUAP1 3551.017 16p13.3
    CMIP 81478.893 16q23
    COTL1 84599.207 16q24.1
    COX4I1 85833.300 16q24.1
    COX6A2 31439.054 16p
    CPNE7 89642.175 16q24.3
    CRYM 21269.842 16p
    CTF1 30907.958 16p11.2
    CX3CL1 57410.883 16q13
    CYB5B 69458.490 16q22.1
    CYBA 88709.698 16q24
    DDX19A 70397.203 16q22.1
    DDX19B 70323.669 16q22.1
    DDX28 68055.208 16q22.1
    DHODH 72049.521 16q22
    DNAJA2 46990.503 16q12.1
    DNAJA3 4475.886 16p13.3
    DOK4 57507.289 16q21
    DPEP1 89679.956 16q24.3
    DYNLRB2 80574.853 16q23.3
    E2F4 67226.130 16q21-q22
    E4F1 2278.393 16p13.3
    EEF2K 22291.654 16p12.2
    EME2 1823.326 16p13.3
    ERN2 23702.115 16p12.2
    FOXC2 86600.940 16q24.1
    FOXF1 86544.132 16q24
    FOXL1 86612.114 16q24
    FTO 53738.090 16q12.2
    FUK 70488.497 16q22.1
    GAS8 90089.007 16q24.3
    GFER 2034.711 16p13.3-p13.12
    GINS3 58426.392 16q21
    GIYD1 30205.405 16p11.2
    GIYD2 30205.217 16p11.2
    GLG1 74485.847 16q22.3
    GNAO1 56226.147 16q13
    GNG13 848.043 16p13.3
    GPR56 57675.499 16q13
    GRIN2A 9856.917 16p13.2
    GSPT1 11962.234 16p13.1
    HAGH 1859.135 16p13.3
    HAS3 69143.298 16q22.1
    HBA1 222.888 16p13.3
    HMOX2 4555.552 16p13.3
    HP 72088.524 16q22.1
    HS3ST2 22825.806 16p12
    HSD11B2 67465.035 16q22
    HSD17B2 82068.878 16q24.1-q24.2
    HYDIN 71061.012 16q22.2
    IGFALS 1840.420 16p13.3
    IL17C 88705.000 16q24
    IL27 28510.972 16p11
    IL32 3115.639 16p13.3
    IRX5 54965.110 16q12.2
    ITGAD 31404.632 16p11.2
    ITGAL 30484.066 16p11.2
    ITGAX 31371.257 16p11.2
    JMJD5 27214.815 16p12.1
    KIAA0174 71929.444 16q22.2
    KIF22 29802.057 16p11.2
    KIFC3 57792.130 16q13-q21
    LCAT 67973.785 16q22.1
    MAP1LC3B 87425.941 16q24.2
    MAPK8IP3 1756.220 16p13.3
    MAZ 29818.810 16p11.2
    MBTPS1 84087.378 16|16q24
    MC1R 89984.286 16q24.3
    MKL2 14328.122 16p13.12
    MLKL 74705.760 16q23.1
    MMP25 3096.752 16p13.3
    MPG 128.237 16p13.3
    MRPL28 417.393 16p13.3
    MSLN 816.058 16p13.3
    MT1A 56672.595 16q13
    MT1E 56659.717 16q13
    MT1F 56691.854 16q13
    MT1G 56700.649 16q13
    MT1H 56703.725 16q13
    MT2A 56642.495 16q13
    MT3 56623.455 16q13
    MTSS1L 70697.580 16q22.1
    NAE1 66836.782 16q22
    NDE1 15758.631 16p13.11
    NDRG4 58497.648 16q21-q22.1
    NFAT5 69599.886 16q22.1
    NFATC3 68119.343 16q22.2
    NKD1 50582.459 16q12
    NME3 1820.342 16q13
    NME4 449.424 16p13.3
    NOD2 50731.049 16q21
    NSMCE1 27236.320 16p12.1
    NTHL1 2089.821 16p13.3
    NUP93 56764.078 16q13
    NUPR1 28548.661 16p11.2
    ORAI3 30960.443 16p11.2
    ORC6L 46723.577 16q12
    OSGIN1 83992.978 16q23.3
    PALB2 23614.480 16p12.2
    PARD6A 67694.885 16q22.1
    PDF 69362.523 16q22.1
    PDIA2 333.163 16p13.3
    PDPK1 2587.997 16p13.3
    PGP 2261.998 16p13.3
    PHKG2 30764.723 16p11.2
    PIGQ 620.003 16p13.3
    PKD1 2140.985 16p13.3
    PKMYT1 3022.819 16p13.3
    PLA2G10 14766.413 16p13.1-p12
    PLCG2 81812.906 16q24.1
    PPL 4932.524 16p13.3
    PPP4C 30087.383 16p11.2
    PRDM7 90122.975 16q24.3
    PRM2 11369.496 16p13.2
    PRSS21 2867.260 16p13.3
    PRSS8 31142.942 16p11.2
    PSKH1 67927.214 16q22.1
    PSMB10 67968.411 16q22.1
    PSMD7 74330.717 16q22.3
    PYCARD 31212.808 16p11.2
    PYDC1 31227.283 16p11.2
    RAB11FIP3 475.618 16p13.3
    RAB26 2199.941 16p13.3
    RAB40C 678.322 16p13.3
    RBBP6 24551.903 16p12.2
    RFWD3 74656.809 16q23.1
    RGS11 319.267 16p13.3
    RHBDF1 108.074 16p13.3
    RNF40 30773.660 16p11.2-p11.1
    RPL13 89627.345 16q24.3|17p11.2
    RPS2 2012.060 16p13.3
    RRAD 66955.746 16q22
    RRN3 15155.556 16p12
    SCNN1B 23315.293 16p12.2-p12.1
    SEPT1 30389.456 16p11.1
    SEPX1 1988.244 16p13.3
    SEZ6L2 29882.830 16p11.2
    SF3B3 70557.745 16q22.1
    SH2B1 28874.124 16p11.2
    SIAH1 48395.492 16q12
    SLC12A3 56899.119 16q13
    SLC12A4 67978.387 16q22.1
    SLC6A2 55734.185 16q12.2
    SLC7A5 87866.523 16q24.3
    SLC9A3R2 2076.990 16p13.3
    SMG1 18819.081 16p12.3
    SOX8 1032.276 16p13.3
    SPG7 89607.703 16q24.3
    SPN 29674.567 16p11.2
    SRCAP 30715.387 16p11.2
    SSTR5 1128.780 16p13.3
    ST3GAL2 70413.714 16q22.1
    STUB1 730.469 16p13.3
    SULT1A1 28616.529 16p12.1
    SULT1A2 28603.265 16p12.1
    TAOK2 29985.601 16p11.2
    TAT 71602.046 16q22.1
    TCF25 89951.012 16q24.3
    TERF2 69389.534 16q22.1
    TFAP4 4307.187 16p13
    TIMM16 4390.252 16p13.3
    TK2 66503.746 16q22-q23.1
    TNFRSF12A 3070.359 16p13.3
    TNFRSF17 12059.079 16p13.1
    TNRC6A 24801.654 16p11.2
    TOX3 52471.991 16q12.1
    TP53TG3 33262.117 16p13
    TPPP3 67423.713 16q22.1
    TPSAB1 1278.603 16p13.3
    TPSG1 1271.789 16p13.3
    TRADD 67188.101 16q22
    TRAF7 2205.784 16p13.3
    TRIM72 31226.330 16p11.2
    TUBB3 89989.809 16q24.3
    UBE2I 1362.331 16p13.3
    USP10 84809.772 16q24.1
    VAC14 70721.343 16q22.1
    VKORC1 31102.175 16p11.2
    YPEL3 30103.637 16p11.2
    ZG16 29790.587 16p11.2
    ZG16B 2880.304 16p13.3
    ZNF23 71482.649 16q22
    ZNF689 30614.700 16p11.2

    GeneCards  

    Contributor(s)

    WrittenJul 2004Philippe Dessen, Sakari Knuutila, Jean-Loup Huret
    Updated Jean-Loup Huret, Philippe Dessen

    Citation

    This paper should be referenced as such :
    Dessen P, Knuutila S, Huret JL . Chromosome . Atlas Genet Cytogenet Oncol Haematol. Jul 2004 .
    URL : http://AtlasGeneticsOncology.org/Indexbychrom/idxa_16.html
    Dessen P, Huret JL . Chromosome . Atlas Genet Cytogenet Oncol Haematol. .
    URL : http://AtlasGeneticsOncology.org/Indexbychrom/idxa_16.html
    © Atlas of Genetics and Cytogenetics in Oncology and Haematology
    indexed on : Wed Sep 1 08:32:00 CEST 2010
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