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Chromosome 5

Chromosome 5 : G-banding, diagram and R-banding - Claude Léonard, Jean-Loup Huret

Leukaemia     

t(1;5)(p32;q31)
t(1;5)(q21;q33) (MPD; TPM3/PDGFRB; rare)
t(1;5)(q22;q33)
t(2;5)(p23;q35)
t(3;5)(q25;q34)
t(3;5)(q21;q31)/ANLL (AML; ---; not rare)
t(3;5)(q26;q34)
t(4;5)(q31;q31)
del(5q) in myeloid malignancies
i(5)(p10) in acute myeloid leukemia
Trisomy 5
t(5;7)(q33;q11)
t(5;9)(q33;q22)
t(5;10)(q33;q21)
ins(5;11)(q31;q13q23)
t(5;11)(q31;q23)
t(5;11)(q35;p15.5)
t(5;12)(q33;p13)
t(5;12)(q31;p13) in MDS, AML and AEL
t(5;14)(q33;q32) PDGFRB/TRIP11
t(5;14)(q33;q24)
t(5;14)(q33;q32) PDGFRB/KIAA1509
t(5;14)(q35;q11) (T-ALL; RanBP17or HOX11L2/TCR; rare)
t(5;14)(q35;q11) (CLL ; NKX2-5 and TRD; rare)
t(5;14)(q35;q32)
t(5;14)(q35;q32) (T-ALL; TLX3 or NKX2-5 and BCL11B; rare)
t(5;14)(q35;q32.2)
t(5;14)(q31;q32)
t(5;15)(p15;q11-13)
t(5;15)(q33;q22)
t(5;16)(q33;q22) (AML; - ; rare)
dic(5;17)(q11;p11) (MDS, ANLL; -; not rare)
t(5;17)(q13;q21)
t(5;17)(q33;p11.2)
t(5;17)(q33;p13) (MDS; PDGFRb and RABEP1; rare)
t(5;17)(q35;q21)
t(5;21)(q13;q22)

Solid Tumors     

Cancer prone diseases     

Cockayne syndrome
Hereditary Desmoid Disease.
Sotos syndrome
Familial adenomatous polyposis (FAP)

All Genes by Location (Kb)
Chromosome 5 by location

Losses / Amplicons     

BONE/SOFT TISSUE

External links     

  • Chromosome 5 - HUGO Chromosomes
  • Chromosome 5 - GoldenPath - Santa Cruz
  • Chromosome 5 - Ensembl Project
  • Chromosome 5 - Map View - NCBI
  • Chromosome 5 - GDB (Genome Data Base)
  • Chromosome 5 - OMIM Gene map
  • Chromosome 5 - Genomic Variants
  • Chromosome 5 - HAPMAP Project
  • Chromosome 5 - Genome Channel - ORNL
  • Chromosome 5 - LaunchPad HGMIS
  • Chromosome 5 - Human Protein Atlas
  • Chromosome 5 - SpliceNest
  • Human BAC Resource (NCBI)
  • FISH-mapped BACs (CCAP)
  • Genetic Maps (CHLC)
  • YACs mapped by FISH (Bari)
  • PCP (Partial Chromosome Paints) (Bari)
  • Positional Cloning Project (Berlin Dahlem)
  • Mouse homology - OMIM - NCBI
  • Cancer GeneWeb
  • GeneCards (Weizmann)
  • Human Proteomics Initiative (Expasy)

    • Genes

    Annotated genes
    Ordered by Name Ordered by Location
     Kb pter-qter
    AFF4 132238.971 5q31
    APC 112101.483 5q21-q22
    ARHGAP26 142130.476 5q31
    CSNK1A1 148855.038 5q32
    ENC1 73958.991 5q12-q13.3
    ERCC8 60205.415 5q12.1
    FNIP1 131005.306 5q23.3
    HDAC3 140980.627 5q31
    IL3 131424.246 5q31.1
    IRF1 131846.684 5q31.1
    ITK 156540.485 5q31-q32
    MAPK9 179595.390 5q35
    MSH3 79986.050 5q11-q12
    NKX2-5 172591.744 5q34
    NPM1 170747.403 5q35
    NSD1 176494.691 5q35.2-q35.3
    PDCD6 324.736 5pter-p15.2
    PDGFRB 149473.595 5q31-q32
    PRLR 35099.985 5p14-p13
    PTTG1 159781.443 5q35.1
    SPINK7 147672.183 5q33.1
    TLX3 170668.893 5q35.1
    Other genes
    possibly implicated
    in cancer
    Ordered by Name Ordered by Location
     Kb pter-qter
    ACSL6 131317.051 5q31
    ADAM19 156836.891 5q32-q33
    ADAMTS12 33563.046 5q35
    ADAMTS16 5193.443 5p15
    ADAMTS19 128824.002 5q31
    ADAMTS2 178510.737 5qter
    ADAMTS6 64480.320 5q12
    ADCY2 7449.343 5p15.3
    ADRA1B 159276.318 5q23-q32
    ADRB2 148186.349 5q31-q32
    AHRR 357.291 5p15.3
    ALDH7A1 125908.348 5q31
    AMACR 34023.663 5p13
    ANKH 14762.019 5p15.1
    ANKHD1 139761.613 5q31.3
    ATOX1 151102.577 5q32
    B4GALT7 176959.778 5q35.2-q35.3
    BNIP1 172504.051 5q33-q34
    BTF3 72830.006 5q13.2
    C1QTNF2 159707.365 5q33.3
    C1QTNF3 34053.722 -
    C7 40945.356 5p13
    CAMK2A 149579.248 5q33.1
    CAMK4 110587.981 5q21.3
    CAMLG 134102.105 5q23
    CANX 179058.536 5q35
    CARD6 40877.167 5p13.1
    CCNB1 68498.669 5q12
    CCNG1 162797.155 5q32-q34
    CCNH 86725.839 5q13.3-q14
    CCNO 54562.738 5p15.2-p13.1
    CCT5 10303.282 5p15.2
    CD14 139991.501 5q22-q32|5q31.1
    CD180 66513.872 5q12
    CD74 149761.397 5q32
    CDC23 137551.240 5q31
    CDC25C 137648.858 5q31
    CDH12 21786.911 5p14-p13
    CDH18 19508.914 5p15.2-p15.1
    CDH6 31229.553 5p15.1-p14
    CDK7 68566.471 5q12.1
    CDKL3 133671.592 5q31
    CDX1 149526.537 5q31-q33
    CENPH 68521.131 5p15.2
    CHD1 98218.809 5q15-q21
    CKMT2 80564.895 5q13.3
    CLK4 177962.272 5q35
    CLPTM1L 1371.000 5pter-p15.3
    CLTB 175752.063 4q2-q3|5q35
    CNOT8 154218.391 5q31-q33
    CSF2 131437.384 5q31.1
    CSNK1G3 122875.692 5q23
    CTGE1 129124.054 18q11.2
    CTNNA1 138117.006 5q31
    CTNND2 11024.952 5p15.2
    CXCL14 134934.275 5q31
    DAB2 39407.537 5p13
    DAP 10732.342 5p15.2
    DDX4 55070.533 5p15.2-p13.1
    DDX41 176871.185 5q35.3
    DDX46 134122.360 5q31.1
    DHFR 79957.801 5q11.2-q13.2
    DHX29 54587.831 5q11.2
    DIAPH1 140874.773 5q31
    DNAJC18 138775.280 5q31.2
    DND1 140030.566 5q31.3
    DOCK2 168996.871 5q35.1
    DPYSL3 146750.566 5q32
    DUSP1 172127.707 5q34
    EDIL3 83273.882 5q14
    EFNA5 106744.250 5q21
    EGR1 137829.080 5q31.1
    ELL2 95246.558 5q15
    ERAP1 96122.271 5q15
    ERAP2 96241.024 5q15
    ERBB2IP 65258.140 5q12.3
    ESM1 54309.900 5q11.2
    ETF1 137869.687 5q31.1
    EXOC3 496.334 5p15.33
    F2R 76047.547 5q13
    F2RL1 76150.610 5q13
    FABP6 159589.015 5q33.3-q34
    FAM134B 16526.148 5p15.1
    FAT2 150863.847 5q32-q33
    FBXL21 135300.162 5q31
    FBXL7 15553.305 5p15.1
    FBXO38 147743.739 5q33.1
    FCHSD1 140999.054 5q31.3
    FER 108111.422 5q21
    FGF1 141953.307 5q31
    FGF10 44340.854 5p13-p12
    FGF18 170779.272 5q34
    FGFR4 176449.157 5q35.1-qter
    FLT4 179961.113 5q35.3
    FOXD1 72777.843 5q12-q13
    FOXI1 169465.495 5q34
    FST 52812.352 5q11.2
    G3BP1 151131.669 5q33.1
    GABRP 170143.343 5q33-q34
    GDF9 132224.777 5q31.1
    GDNF 37851.510 5p13.1-p12
    GEMIN5 154247.169 5q33.2
    GHR 42459.783 5p13-p12
    GLRX 95175.431 5q14
    GPX3 150380.192 5q23
    GRK6 176786.293 5q35
    GTF2H2 70366.709 5q12.2-q13.3
    HARS 140033.675 5q31.3
    HAVCR1 156389.109 5q33.2
    HAVCR2 156445.421 5q33.3
    HBEGF 139692.613 5q23
    HCN1 45295.110 5p12
    HK3 176240.477 5q35.2
    HMG1L10 132238.970 22q12.1
    HMHB1 143171.919 5q32
    HMMR 162820.241 5q33.2-qter
    HPC3 147529.489 20q13
    HPC4 147529.489 7p11-q21
    HRH2 175042.318 5q35.2
    HSPA4 132415.561 5q31.1-q31.2
    HSPA9 137918.923 5q31.1
    HSPB3 53787.202 5q11.2
    IL12B 158674.369 5q31.1-q33.1
    IL13 132021.764 5q31
    IL31RA 55183.091 5q11.2
    IL4 132037.272 5q31.1
    IL5 131905.035 5q31.1
    IL6ST 55272.452 5q11
    IL9 135255.834 5q31.1
    IPO11 61744.351 5q12.1
    IQGAP2 75734.905 5q13.3
    IRX2 2799.880 5p15.33
    ITGA1 52119.893 5q11.2
    ITGA2 52320.913 5q23-q31
    JMJD1B 137716.184 5q31
    JMY 78569.043 5q14.1
    KCNMB1 169737.745 5q34
    KIF20A 137543.248 5q31
    LCP2 169607.667 5q33.1-qter
    LIFR 38510.823 5p13-p12
    LNPEP 96319.912 5q15
    LOC285634 140996.777 5p13.1
    LOX 121429.919 5q23.2
    LTC4S 179153.592 5q35
    MAML1 179092.457 5q35
    MAP1B 71438.874 5q13
    MAP3K1 56146.657 5q11.2
    MAPK6PS1 95008.239 8q11.23
    MAPK6PS3 95008.239 13q14.13
    MAST4 65927.932 5q12.3
    MAT2B 162862.809 5q34-q35
    MCC 112385.695 5q21
    MEF2C 88051.922 5q14
    MGAT4B 179156.711 5q35
    MGC29506 138751.157 5q23-q31
    MGC42105 43228.084 5p12
    MRPS30 44844.784 5q11
    MSX2 174084.181 5q34-q35
    MTMR12 32262.869 5p13.3
    MTRR 7922.217 5p15.3-p15.2
    MYCL3 138730.793 Xq27.2
    NAIP 70300.066 5q13.1
    NDUFAF2 60276.798 5q12.1
    NEWENTRY 175748.379 -
    NIPBL 36912.742 5p13.2
    NKD2 1062.168 5p15.3
    NOLA2 177509.074 5q35.3
    NR2F1 92944.799 5q14
    NR3C1 142637.689 5q31.3
    NRG2 139207.444 5q23-q33
    NSUN2 6652.355 5p15.31
    OCLN 68823.875 5q13.1
    OSMR 38881.893 5p13.1
    PAM 102229.426 5q14-q21
    PART1 59819.515 5q12.1
    PCDH1 141212.867 5q32-q33
    PCDH24 175908.971 -
    PCDHGA5 140724.082 5q31
    PCDHGC3 140835.753 5q31
    PCSK1 95751.875 5q15-q21
    PDE4D 58300.623 5q12
    PDLIM4 131621.286 5q31.1
    PDLIM7 176843.001 5q35.3
    PDZD2 31834.788 5p13.3
    PGGT1B 114575.476 5q22.3
    PIK3R1 67558.218 5q13.1
    PITX1 134391.323 5q31
    PLCXD3 41342.806 5p13.1
    PLEKHG4B 193.373 5p15.33
    PLK2 57785.569 5q12.1-q13.2
    POLK 74843.337 5q13
    POLS 6767.718 5p15
    POU4F3 145698.869 5q31
    PPAP2A 54756.442 5q11
    PPARGC1B 149090.057 5q33.1
    PPP1R3G 167975.935 6p25.1
    PPP2CA 133560.048 5q31.1
    PPP2R2B 145949.261 5q31-q32
    PRKAA1 40795.239 5p12
    PROP1 177351.842 5q35.3
    PTGER4 40715.789 5p13.1
    PURA 139473.892 5q31
    RAB24 176660.806 5q35.3
    RAB3C 57914.696 5q13
    RAB9P1 104463.075 5q21.2
    RAD1 34941.125 5p13.2
    RAD17 68701.395 5q13
    RAD21L1 76181.582 -
    RAD50 131920.529 5q31
    RANBP17 170221.600 5q34
    RAPGEF6 130789.503 5q31.1
    RASA1 86600.522 5q13.3
    RASGEF1C 179460.402 5q35.3
    RASGRF2 80292.314 5q13
    RGS14 176717.450 5q35.3
    RHOBTB3 95092.606 5q15
    RICTOR 38973.782 5p13.1
    RIOK2 96524.397 5q15
    RNASEN 31436.359 5p13.3
    RNF130 179315.080 5q35.3
    RNF14 141328.806 5q23.3-q31.1
    RNF44 175886.306 5q35.2
    ROPN1L 10495.015 5p15.2
    SAP30L 153805.776 5q33.2
    SCGB3A1 179949.711 5q35-qter
    SDCCAG10 64100.511 5q12.3
    SEMA5A 9088.138 5p15.2
    SEPP1 42835.739 5q31
    SEPT8 132119.596 5q31
    SKP1 133520.468 5q31
    SKP2 36187.946 5p13
    SLC12A2 127447.382 5q23.3
    SLC12A7 1103.489 5p15
    SLC1A3 36642.448 5p13
    SLC23A1 138730.790 5q31.2-q31.3
    SLC26A2 149320.493 5q31-q34
    SLC45A2 33980.478 5p13.3
    SLC6A3 1445.910 5p15.3
    SLC9A3 526.425 5p15.3
    SMAD5 135496.435 5q31
    SPARC 151021.207 5q31.3-q32
    SPINK1 147184.339 5q32
    SPINK5 147423.759 5q32
    SPOCK1 136338.888 5q31
    SPRY4 141670.192 5q31.3
    SQSTM1 179180.503 5q35
    SRA1 139909.838 5q31.3
    SRD5A1 6686.500 5p15
    SSBP2 80751.429 5q14.1
    ST8SIA4 100248.914 5q21
    STARD4 110861.921 5q22.1
    STC2 172674.332 5q35.2
    STK10 171401.679 5q35.1
    TAF7 140678.242 5q31
    TAF9 68696.327 5q11.2-q13.1
    TAG 12627.968 -
    TCF7 133479.215 5q31.1
    TERT 1306.287 5p15.33
    TGFBI 135392.597 5q31
    THBS4 79366.747 5q13
    TNFAIP8 118719.495 5q23.1
    TNPO1 72179.686 5q13.2
    TPPP 712.977 5p15.3
    TRESMCR 176663.406 17p11.2
    TRIM36 114541.136 5q22.3
    TRIO 14196.829 5p15.1-p14
    UBE2B 133734.769 5q23-q31
    UBE2D2 138920.935 5q31.2
    UBM2 76181.582 3p25.2-p25.1
    UIMC1 176264.612 5q35.2
    UNC5A 176170.166 5q35.2
    UVM1 76181.582 3q24-q26
    VCAN 82803.339 5q14.3
    WNT8A 137447.673 5q31
    WWC1 167651.670 5q35.1
    XRCC4 82409.073 5q13-q14
    YIPF5 143517.920 5q32
    ZDHHC11 848.722 5p15.33
    ZRSR1 112255.207 5q22

    GeneCards   GDB - List of genes

    This page should be referenced as such :
    Dessen P, Knuutila S, Huret JL Chromosome 5. Atlas Genet Cytogenet Oncol Haematol. 2002.
    URL : http://AtlasGeneticsOncology.org/Indexbychrom/idxa_5.html
    © Atlas of Genetics and Cytogenetics in Oncology and Haematology
    indexed on : Tue Jul 1 08:53:29 2008
    Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case reports   Journals   Portal   Teaching   

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