Atlas of Genetics and Cytogenetics in Oncology and Haematology

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Chromosome 6

Chromosome 6 : G-banding, diagram and R-banding - Claude Léonard, Jean-Loup Huret
Chromosome 6 diagrams ISCN 2009 - Courtesy Nicole Chia

Leukaemia     

der(6)t(1;6)(q21-23;p21)
t(1;6)(p35;p25)
t(1;6)(p36;p21)
t(2;6)(p12;p25) IRF4/IGK
t(3;6)(q25;q26)
t(3;6)(q27;p21) SFRS3/BCL6
t(3;6)(q27;p21) PIM1/BCL6
t(3;6)(q27;p21)
t(3;6)(q27;p22) HIST1H4I/BCL6
t(3;6)(q27;q14) SNHG5/BCL6
t(3;6)(q27;q15)
del(6q) abnormalities in lymphoid malignancies
del(6q) in Multiple Myeloma
i(6)(p10)
inv(6)(p15q13)
inv(6)(p25q13)
+6 or trisomy 6
t(6;7)(q23;q34)
t(6;8)(q11;q11)
t(6;8)(q27;p12)
t(6;9)(p23;q34)
t(6;11)(q13;q23)
t(6;11)(q15;q23)
t(6;11)(q21;q23) (AML, T-NHL; AF6q21 and MLL; rare)
t(6;11)(q27;q23)
t(6;12)(p21;p13) in lymphoid malignancies
t(6;12)(q15;p13)/NHL (AML, T-CLD; - ; rare)
t(6;12)(q21-22;p13) (AML, B-ALL, T-ALL, CLD; FRK and ETV6 in AML; rare)
t(6;12)(q22-23;p13) (Cell line (B-ALL); STL and ETV6; rare)
t(6;14)(p21;q32)
t(6;14)(p22;q32)
t(6;14)(p25;q32) ( CLD; IRF4 and IgH; rare)
t(6;14)(q25-27;q32)
t(6;14)(p25;q32) IRF4/IGH
t(6;20)(q15;q11.2) BACH2/BCL2L1
t(6;21)(p22;q22)
t(6;22)(p21;q11)
t(6;22)(p25;q11) IRF4/IGL
Acute basophilic leukemia

Solid Tumors     

inv(6)(p13;q25)
6p21 rearrangements
t(6;9)(q23;p23)
t(6;11)(p21;q12)
t(6;22)(p21;q12)
t(6;22)(p21;q12)
t(6;22)(p21;q12)

Cancer prone diseases     

All Genes by Location (Kb)
Chromosome 6 by location

Losses / Amplicons     

BONE/SOFT TISSUE

External links     

  • Chromosome 6 - HUGO Chromosomes
  • Chromosome 6 - GoldenPath - Santa Cruz
  • Chromosome 6 - Ensembl Project
  • Chromosome 6 - Map View - NCBI
  • Chromosome 6 - OMIM Gene map
  • Chromosome 6 - Genomic Variants
  • Chromosome 6 - HAPMAP Project
  • Chromosome 6 - Genome Channel - ORNL
  • Chromosome 6 - LaunchPad HGMIS
  • Chromosome 6 - Human Protein Atlas
  • Chromosome 6 - Array BAC clone - Roswell Park Cancer Institute
  • Chromosome 6 - Human BAC Resource (NCBI)
  • Chromosome 6 FISH-mapped BACs (CCAP)
  • Genetic Maps (CHLC)
  • YACs mapped by FISH (Bari)
  • PCP (Partial Chromosome Paints) (Bari)
  • Mouse homology - OMIM - NCBI
  • Chromosome 6 Cancer GeneWeb
  • Chromosome 6 GeneCards (Weizmann)
  • Human Proteomics Initiative (Expasy)

    • Genes

    Annotated genes
    Ordered by Name Ordered by Location
     Kb pter-qter
    AGER 32148.745 6p21.3
    AKAP12 151561.134 6q24-q25
    BACH2 90636.247 6q15
    BAK1 33540.323 6p21.31
    BCLAF1 136578.001 6q22-q23
    CAGE1 7326.887 6p24.3
    CD109 74405.508 6q14.1
    CDKN1A 36646.456 6p21.1
    CITED2 139693.392 6q23.3
    CLIC1 31698.358 6p21.3
    CTGF 132269.317 6q23.2
    DAXX 33286.335 6p21.3
    DDR1 30856.465 6p21.33
    DDX43 74104.285 6q12-q13
    DEK 18224.400 6p23
    E2F3 20404.034 6p22
    EEF1A1 74225.473 6q14.1
    EPHA7 93949.740 6q16.3
    FANCE 35420.138 6p22-p21
    FGFR1OP 167412.816 6q27
    FOXC1 1610.681 6p25
    FOXO3 108882.069 6q21
    HACE1 105175.968 6q21
    HDAC2 114257.320 6q21
    HFE 26087.509 6p21.3
    HLA-G 29794.756 6p21.3
    HMGA1 34204.577 6p21
    ID4 19837.601 6p22.3
    IER3 30710.976 6p21.3
    IGF2R 160390.131 6q25-q27
    IL17A 52051.185 6p12
    IRF4 391.739 6p25-p23
    LATS1 150004.055 6q25.1
    LIN28B 105404.923 6q21
    LTA 31540.071 6p21.3
    MAP3K7 91223.292 6q15
    MAPK13 36098.261 6p21
    MAPK14 35995.454 6p21.3-p21.2
    MARCKS 114178.527 6q21
    MIR30A 72113.254 6q13
    MLLT4 168227.671 6q27
    MYB 135502.453 6q22-q23
    NT5E 86159.302 6q14-q21
    PIM1 37137.922 6p21
    PLAGL1 144261.437 6q24-q25
    POLH 43543.878 6p21
    PPARD 35310.335 6p21.2
    PRDM1 106534.195 6q21
    PTK7 43044.552 6p21.1-p12.2
    RANBP9 13621.730 6p23
    RGS17 153332.032 6q25-q26
    RNASET2 167343.004 6q27
    RUNX2 45296.054 6p21
    SMAP1 71377.479 6q12-q13
    SOX4 21593.972 6p22.3
    SRSF3 36562.090 6p21
    TFAP2A 10396.916 6pter-p22.3
    TFEB 41651.716 6p21
    THBS2 169615.875 6q27
    TNF 31543.344 6p21.3
    TNFAIP3 138188.325 6q23-q25
    UBD 29523.389 6p21.3
    WISP3 112375.278 6q21
    Other genes
    possibly implicated
    in cancer
    Ordered by Name Ordered by Location
     Kb pter-qter
    ABCC10 43395.292 6p12.3
    ABCF1 30539.170 6p21.33
    ACAT2 160182.989 6q25.3-q26
    AHI1 135605.110 6q23.2
    AIF1 31583.033 6p21.3
    AIG1 143382.023 6q24.1
    AIM1 106959.730 6q21
    AKAP7 131571.299 6q23.2
    AMD1 111195.988 6q21
    APOBEC2 41020.940 6p21
    APOM 31620.187 6p21
    ARG1 131894.344 6q23
    ARHGAP18 129898.240 6q23.1
    ARID1B 157099.064 6q25.1
    ASCC3 100956.608 6q16
    ASF1A 119215.241 6q22.31
    ATG5 106632.352 6q21
    B3GALT4 33244.917 6p21.3
    BAG2 57037.104 6p12.3-p11.2
    BAG6 31606.805 6p21.3
    BAI3 69345.632 6q12
    BMP5 55620.238 6p12.1
    BMP6 7727.011 6p24-p23
    BRD2 32938.665 6p21.3
    BTN3A1 26402.465 6p22.1
    BTN3A2 26368.406 6p22.1
    BVES 105544.699 6q21
    BYSL 41888.965 6p21.1
    C4A 31949.834 6p21.3
    C4B 31949.834 6p21.3
    C6orf136 30614.816 6p21.33
    C6orf211 151773.422 6q25.1
    CAHM 163834.097 6q26
    CAP2 17393.736 6p22.3
    CASP8AP2 90539.619 6q15
    CCDC170 151815.175 6q25.1
    CCDC28A 139094.657 6q23.1-q24.1
    CCHCR1 31110.216 6p21.3
    CCNC 99990.263 6q21
    CCND3 41902.671 6p21
    CCR6 167525.295 6q27
    CD164 109687.717 6q21
    CD83 14117.865 6p23
    CDC5L 44355.251 6p
    CDK19 110931.181 6q21
    CENPW 126661.253 6q22.32
    CEP85L 118781.935 6q22.31
    CFB 31913.721 6p21.3
    CGA 87795.216 6q14-q21
    CNR1 88849.585 6q14-q15
    COL10A1 116440.085 6q21-q22
    COL11A2 33154.222 6p21.3
    COL12A1 75794.042 6q12-q13
    COX7A2 75947.391 6q14.1
    CPNE5 36708.555 6p21.2
    CRISP2 49660.071 6p12.3
    CRISP3 49695.092 6p12.3
    CSNK2B 31633.657 6p21.33
    CTAGE9 132029.581 6q23.2
    CUL7 43005.355 6p21.1
    CUL9 43149.922 6p21.1
    CUTA 33384.319 6p21.32
    CYP21A2 31973.359 6p21.3
    CYP39A1 46517.445 6p21.1-p11.2
    DACT2 168707.584 6q27
    DCDC2 24171.983 6p22.1
    DDX39B 31497.996 6p21.33
    DEF6 35265.595 6p21.33-p21.1
    DHX16 30620.896 6p21.3
    DLL1 170591.294 6q13-q22.33
    DSE 116601.283 6q22
    DSP 7541.870 6pter-p21
    DST 56479.375 6p12.1
    DUSP22 292.101 6pter-q22.33
    ECHDC1 127609.857 6q22.33
    ECT2L 139117.248 6q24.1
    EDN1 12290.529 6p24.1
    EEF1E1 8073.593 6p24.3
    EFHC1 52285.805 6p12.3
    EGFL8 32132.382 6p21
    EHMT2 31847.537 6p21.3
    ENPP1 132129.156 6q22-q23
    ENPP3 131958.442 6q22
    EPM2A 145946.440 6q24
    ESR1 152128.814 6q24-q27
    ETV7 36321.998 6p21
    EXOC2 485.138 6p25.3
    EYA4 133562.495 6q23
    EZR 159186.773 6q25.3
    F13A1 6144.311 6p24.2-p23
    FABP7 123100.646 6q22-q23
    FAM46A 82455.447 6q14
    FAM65B 24804.513 6p22.3-p21.32
    FAM83B 54711.569 6p12.1
    FBXO30 146119.272 6q24
    FBXO5 153291.658 6q25-q26
    FGD2 36973.423 6p21.2
    FKBP5 35541.362 6p21.31
    FKBPL 32096.484 6p21.3
    FLOT1 30695.511 6p21.3
    FNDC1 159590.429 6q25
    FOXF2 1390.069 6p25.3
    FOXP4 41514.164 6p21.1
    FOXQ1 1312.675 6p25
    FRK 116262.693 6q21-q22.3
    FRS3 41737.914 6p21.1
    FYN 111981.535 6q21
    GABBR1 29570.005 6p21.31
    GCLC 53362.140 6p12
    GCM1 52991.760 6p21-p12
    GCNT2 10555.949 6p24.2
    GJA1 121756.745 6q22-q23
    GLO1 38643.702 6p21.3-p21.1
    GLP1R 39016.557 6p21
    GMDS 1624.035 6p25
    GMNN 24775.159 6p21.32
    GNL1 30509.155 6p21.3
    GNMT 42928.500 6p12
    GOPC 117881.433 6q21
    GPLD1 24426.062 6p22.1
    GPR110 46987.622 6p21.1
    GPRC6A 117113.248 6q22.1
    GPX5 28493.789 6p22.1
    GRM1 146348.782 6q24
    GRM4 33989.623 6p21.3
    GSTA1 52656.178 6p12.2
    GSTA2 52614.885 6p12.2
    GSTA3 52761.439 6p12.2
    GSTA4 52842.746 6p12.2
    GTF2H4 30875.977 6p21.3
    GTF2H5 158589.379 6q25.3
    HCRP1 42326.530 6p21.1
    HECA 139456.249 6q23-q24
    HEY2 126070.732 6q
    HIST1H1A 26017.260 6p22.1
    HIST1H2AC 26124.373 6p22.1
    HIST1H4F 26240.654 6p22.1
    HIST1H4I 27107.088 6p22.1
    HLA-A 29910.247 6p21.3
    HLA-B 31321.649 6p21.3
    HLA-C 31236.526 6p21.3
    HLA-DMB 32902.406 6p21.3
    HLA-DOA 32971.960 6p21.3
    HLA-DOB 32780.540 6p21.3
    HLA-DPA1 33032.346 6p21.3
    HLA-DPB1 33043.703 6p21.3
    HLA-DQA1 32605.183 6p21.3
    HLA-DQB1 32627.241 6p21.3
    HLA-DRA 32407.619 6p21.3
    HLA-DRB1 32546.547 6p21.3
    HLA-DRB5 32485.154 6p21.3
    HLA-E 30457.183 6p21.3
    HMGN3 79910.962 6q14.3
    HMGN4 26538.572 6p21.3
    HSD17B8 33172.414 6p21.3
    HSF2 122720.696 6q22
    HSP90AB1 44214.695 6p12
    HSPA1A 31783.291 6p21.3
    HSPA1B 31795.512 6p21.3
    HSPA1L 31777.396 6p21.3
    HTR1B 78171.948 6q13
    HULC 8652.442 6p24.3
    HUS1B 655.939 6p25.3
    ICK 52866.098 6p12.3-p11.2
    IFNGR1 137518.621 6q23-q24
    IL17F 52101.484 6p12
    IL20RA 137321.108 6q23.3
    IP6K3 33689.443 6p21.31
    ITPR3 33589.156 6p21.31
    IYD 150690.028 6q25.1
    JARID2 15249.086 6p24-p23
    KATNA1 149916.011 6q24.3
    KCNK5 39156.747 6p21
    KCNQ5 73331.571 6q14
    KHDRBS2 62389.865 6
    KIAA1244 138483.053 6q23.3
    KIF13A 17763.924 6p23
    KIF6 39302.876 6p21.2
    KIFC1 33359.313 6p21.32
    KPNA5 117002.367 6q22.2
    LAMA2 129204.286 6q22-q23
    LAMA4 112429.134 6q21
    LGSN 63985.856 6pter-q22.33
    LPA 160952.515 6q25-q26
    LST1 31554.977 6p21.3
    LTB 31548.336 6p21.3
    MAD2L1BP 43597.279 6p21.1
    MAK 10762.956 6q22
    MAP3K4 161412.822 6q25.3
    MAP3K5 136878.187 6q22.33
    MAP7 136663.419 6q23.2
    MAS1 160327.974 6q24-q27
    MAS1L 29454.543 6p21
    MCM3 52128.812 6p12
    MCM9 119134.612 6q22.31
    MDC1 30667.584 6p21.3
    MDFI 41606.195 6p21
    MED23 131895.106 6q22.33-q24.1
    MEP1A 46761.094 6p12-p11
    MICA 31371.371 6p21.3
    MICB 31465.855 6p21.3
    MIR133B 52013.721 6p12.2
    MIR206 52009.147 6p12.2
    MMS22L 97590.037 6q16.3
    MRPS10 42174.539 6p21.1
    MRS2 24403.153 6p22.3-p22.1
    MSH5 31707.725 6p21.3
    MTCH1 36935.911 6p21.2
    MTHFD1L 151186.815 6q25.1
    MYCT1 153019.030 6q25.1
    MYO6 76458.909 6q14.1
    NCOA7 126111.909 6q22.33
    NCR2 41303.528 6p21.1
    NCR3 31556.660 6p21.3
    NDUFAF4 97337.187 6q16.3
    NEDD9 11183.531 6p25-p24
    NEU1 31826.829 6p21
    NFKBIE 44225.903 6p21.1
    NFKBIL1 31515.353 6p21.3
    NFYA 41040.707 6p21.3
    NKAIN2 124125.069 6q21
    NOTCH4 32162.620 6p21.3
    NOX3 155716.502 6q25.3
    NQO2 3000.067 6pter-q12
    NR2E1 108487.215 6q21
    NRN1 5998.233 6p25.1
    NRSN1 24126.414 6p22.1
    NUP153 17615.269 6p22.3
    OPRM1 154360.443 6q24-q25
    PACRG 163148.164 6q26
    PAQR8 52226.926 6p12
    PARK2 161768.590 6q25.2-q27
    PBOV1 138537.127 6q23.3
    PBX2 32152.510 6p21.32
    PCMT1 150070.831 6q22.3-q24
    PDCD2 170890.835 6q27
    PDE10A 165740.776 6q26
    PDE7B 136172.834 6q23-q24
    PDSS2 107473.761 6q21
    PERP 138409.642 6q24
    PEX6 42931.611 6p22-p11
    PFDN6 33257.412 6p21.3
    PGC 41708.576 6p21.1
    PGM3 83874.593 6q14.1-q15
    PHF10 170104.002 6q27
    PHF1 33378.773 6p21.3
    PHIP 79644.136 6q14
    PI16 36916.039 6p21.31
    PKHD1 51480.145 6p21.2-p12
    PKIB 122793.062 6q22.31
    PLA2G7 46672.053 6p21.2-p12
    PLG 161123.225 6q26
    PNISR 99847.841 6q16.3
    POPDC3 105605.775 6q21
    POU3F2 99282.580 6q16.2
    POU5F1 31132.114 6p21.33
    PPP1R10 30568.177 6p21.3
    PPP1R11 30034.932 6p21.3
    PPP1R14C 150464.188 6q24.3-q25.3
    PPP1R3G 5085.720 6p25.1
    PPP2R5D 42952.237 6p21.1
    PREP 105725.442 6q22
    PRICKLE4 41748.500 6p21.1
    PRIM2 57182.422 6p12-p11.1
    PRL 22287.473 6p22.2-p21.3
    PRPF4B 4021.569 6p24.2
    PRPH2 42664.333 6p21.2-cen
    PRRC2A 31588.450 6p21.3
    PSMB1 170844.204 6q27
    PSMB8 32808.494 6p21.3
    PSMB9 32821.938 6p21.3
    PTCRA 42883.727 6p21.3
    PTP4A1 64281.920 6q12
    PTPRK 128289.924 6q22.2-q22.3
    QKI 163835.675 6q26
    QRSL1 107077.441 6q21
    RAB23 57053.582 6p12.1
    RAB32 146864.828 6q24.2
    RAB44 36665.628 6p21.31-p21.2
    RAET1E 150209.601 6q24.3
    RCAN2 46188.467 6p12.3
    REPS1 139225.620 6q24.1
    REV3L 111620.234 6q22
    RFX6 117198.376 6q22.31
    RGL2 33259.431 6p21.3
    RIMS1 72922.514 6q12-q13
    RING1 33176.286 6p21.3
    RIOK1 7390.062 6p24.3
    RIPK1 3077.058 6p25.2
    RIPPLY2 84562.985 6q14.2
    RNF144B 18387.581 6p22.3
    RNF146 127587.883 6q22.1-q22.33
    RNF39 30038.043 6p21.3
    RNF5 32146.162 6p21.31
    RNF8 37321.748 6p21.3
    ROS1 117609.530 6q21-q22
    RPL10A 35436.178 6p21.31
    RPS10 34385.231 6p21.31
    RPS12 133135.708 6q23
    RPS6KA2 166822.854 6q27
    RRAGD 90074.335 6q15-q16
    RREB1 7108.086 6p25
    RSPO3 127440.048 6q22.33
    RXRB 33161.362 6p21.3
    SASH1 148663.729 6q24.3
    SCGN 25652.429 6p22.3-p22.1
    SCUBE3 35182.190 6p21.3
    SEC63 108188.960 6q21
    SENP6 76311.622 6q13-q14.3
    SERINC1 122764.493 6q22.32
    SERPINB6 2948.393 6p25
    SERPINB9 2887.500 6p25
    SESN1 109307.640 6q21
    SGK1 134490.384 6q23
    SHPRH 146205.945 6q24.2
    SIM1 100836.750 6q16.3-q21
    SKIV2L 31926.581 6p21
    SLC22A1 160542.863 6q25.3
    SLC22A16 110745.892 6q21
    SLC22A2 160637.794 6q25.3
    SLC22A3 160769.405 6q25.3
    SLC25A27 46620.652 6p12.3
    SLC29A1 44187.242 6p21.1
    SLC2A12 134308.719 6q23.2
    SLC35B2 44221.838 6p12.1-p11.21
    SLC35B3 8413.301 6p24.3
    SMPD2 109761.931 6q21
    SMPDL3A 123109.971 6q22.32
    SNAP91 84262.605 6q15
    SNHG5 86386.725 6q14.3
    SNORD50A 86387.012 6q14.3
    SNX3 108532.717 6q21
    SOD2 160102.755 6q25
    SPDEF 34505.579 6p21.3
    SRF 43138.920 6p
    SRPK1 35800.811 6p21.31
    SSR1 7281.288 6p24.3
    STK19 31939.646 6p21.33
    STK38 36461.669 6p21
    STL 125229.392 6q22.33
    STX7 132778.663 6q23.1
    SUPT3H 44794.467 6p21.1-p12.3
    SYNE1 152442.819 6q24.2-q25.3
    SYNJ2 158438.080 6q25.3
    T 166571.146 6q27
    TAB2 149639.436 6q25.1
    TAP1 32812.986 6p21.3
    TAP2 32793.187 6p21.3
    TAPBP 33267.472 6p21.3
    TBC1D7 13305.184 6p23
    TBCC 42712.234 6p21.1
    TBP 170863.421 6q27
    TBX18 85442.216 6q14.1-q15
    TCF21 134210.260 6q23-q24
    TDP2 24650.205 6p22.3-p22.1
    TDRG1 40346.163 6p21.2
    TFAP2B 50786.439 6p12
    THEMIS 128029.339 6q22.33
    TIAM2 155538.097 6q25
    TNFRSF21 47199.268 6p21.1
    TNXB 32008.932 6p21.3
    TPBG 83073.961 6q14-q15
    TPD52L1 125475.420 6q22-q23
    TPMT 18128.545 6p22.3
    TRAF3IP2 111876.581 6q21
    TRAM2 52362.200 6p21.1-p12
    TREM1 41247.277 6p21.1
    TRERF1 42192.669 6p21.1-p12.1
    TRIM26 30152.232 6p21.3
    TRIM27 28870.779 6p22
    TRIM31 30070.674 6p21.3
    TRIM40 30104.510 6p21.31
    TRMT11 126307.576 6q11.1-q22.33
    TSG1 94416.801 6q16.1
    TTBK1 43211.222 6p21.1
    TTK 80714.322 6q13-q21
    TUBB2A 3153.902 6p25.2
    TUBB2B 3224.495 6p25.2
    TUBB 30688.157 6p21.33
    TXNDC5 7881.483 6p24.3
    UBE2J1 90036.344 6q16.1
    ULBP1 150285.143 6q25
    ULBP2 150263.136 6q25
    ULBP3 150385.743 6q25
    UNC93A 167704.803 6q27
    UST 149068.271 6q25.1
    UTRN 144612.873 6q24
    VARS2 30881.982 6p21.33
    VEGFA 43737.946 6p12
    VIP 153071.932 6q24-q27
    VNN1 133001.997 6q23-q24
    WASF1 110421.022 6q21
    WRNIP1 2765.666 6p25.2
    WTAP 160148.532 6q25-q27
    XPO5 43490.068 6p21.1
    ZBTB2 151685.250 6q25.1
    ZC3H12D 149768.766 6q25.1
    ZKSCAN3 28317.691 6p22.1
    ZNF451 56954.828 6p12.1
    ZNRD1 30029.036 6p21

    GeneCards  

    Contributor(s)

    WrittenJul 2004Philippe Dessen, Sakari Knuutila, Jean-Loup Huret
    UpdatedMay 2013Jean-Loup Huret, Philippe Dessen

    Citation

    This paper should be referenced as such :
    Dessen P, Knuutila S, Huret JL . Chromosome . Atlas Genet Cytogenet Oncol Haematol. Jul 2004 .
    URL : http://AtlasGeneticsOncology.org/Indexbychrom/idxa_6.html
    Dessen P, Huret JL . Chromosome . Atlas Genet Cytogenet Oncol Haematol. May 2013 .
    URL : http://AtlasGeneticsOncology.org/Indexbychrom/idxa_6.html
    © Atlas of Genetics and Cytogenetics in Oncology and Haematology
    indexed on : Wed May 15 19:19:12 CEST 2013
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