Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case reports   Journals   Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

Chromosome 9

Chromosome 9 : G-banding, diagram and R-banding - Claude Léonard, Jean-Loup Huret
Chromosome 9 diagrams ISCN 2009 - Courtesy Nicole Chia

Leukaemia     

t(1;9)(p34;q34) SFPQ/ABL1
t(1;9)(q24;q34) RCSD1/ABL1
t(2;9)(p11;p13) PAX5/?
t(2;9)(q37;q34) INPP5D-ABL1
dic(3;9)(p14;p13) PAX5/FOXP1
t(3;9)(q26;p23) ?/MECOM
t(3;9)(q27;p13) GRHPR/BCL6
t(3;9)(q27;p24) DMRT1/BCL6
ins(9;4)(q33;q12q25) CDK5RAP2/PDGFRA
t(5;9)(q32;p24) KANK1/PDGFRB
t(5;9)(q33;q22) ITK/SYK
t(6;9)(p22;q34) DEK/NUP214
dic(7;9)(p11-13;p11)
dic(7;9)(p11-12;p12-13) PAX5/LOC392027
t(7;9)(q11;p13) PAX5/ELN
t(7;9)(q11.2;p13.2) PAX5/AUTS2
t(7;9)(q34;q32) TRB/TAL2
t(7;9)(q34;q34) TRB-NOTCH1
t(8;9)(p12;q33) CNTRL/FGFR1
t(8;9)(p22;p24) PCM1/JAK2
t(8;9)(q24;p13) /MYC
t(8;9)(q24;q13)
9p Rearrangements in ALL
del(9q) solely
I(9q) in ALL
t(9;9)(q34;q34) SET/NUP214
+9 or trisomy 9
NUP214/ABL1 fusion gene on amplified episomes
t(9;10)(q34;q22) ZMIZ1/ABL1
t(9;11)(q34;q23) FBP17/MLL
t(9;11)(p22;p15) NUP98/PSIP1
t(9;11)(q34;p15) NUP98/PRRX2
t(9;11)(q34;q23) KMT2A/DAB2IP
t(9;11)(p22;q23) KMT2A/MLLT3
t(9;12)(p24;p13) ETV6/JAK2
dic(9;12)(p13;p12) PAX5/SLCO1B3
dic(9;12)(p13;p13) PAX5/ETV6
t(9;12)(q22;p12) ETV6/SYK
t(9;12)(q34;p13) ETV6/ABL1
t(9;13)(p12;q21) PAX5/DACH1
t(9;14)(p13;q32) PAX5/IGH
t(9;14)(q33;q32) IGH/LHX2
t(9;14)(q34;q32) EML1/ABL1
t(9;15)(p13;q24) PAX5/PML
t(9;17)(q34;q23) ( NHL; - ; rare)
der(9;18)(p10;q10)
dic(9;18)(p13;q11) PAX5/ZNF521
dic(9;20)(p11-13;q11) PAX5/Various
t(9;21)(p22;q22)
t(9;21)(q34;q22) RUNX1 truncated
t(9;22)(q34;q11) BCR/ABL1 in ALL
t(9;22)(q34;q11) BCR/ABL1 in AML
t(9;22)(q34;q11) BCR/ABL1 in CML
t(9;22)(p24;q11.2)
t(9;22)(q34;q11) BCR/ABL1 in treatment related leukemia
t(X;9)(q21;p13) PAX5/DACH2

Solid Tumors     

t(6;9)(q23;p23)
t(9;17)(q22;q11)
t(9;15)(q22;q21)
t(9;22)(q22;q12)
t(9;17)(q22;q11)
t(9;17)(q22;p13)
t(9;22)(q22;q12)

Cancer prone diseases     

Cartilage-hair hypoplasia (CHH)
Diaphyseal medullary stenosis with malignant fibrous histiocytoma (DMS-MFH)
Familial melanoma
Melanoma-Astrocytoma syndrome
Multiple self-healing squamous epithelioma
Naevoid basal cell carcinoma syndrome (NBCS)
Tuberous sclerosis (TSC)

All Genes by Location (Kb)

Chromosome 9 by location

Losses / Amplicons     

BONE/SOFT TISSUE



External links     

  • Chromosome 9 - HUGO Chromosomes
  • Chromosome 9 - GoldenPath - Santa Cruz
  • Chromosome 9 - Ensembl Project
  • Chromosome 9 - Map View - NCBI
  • Chromosome 9 - OMIM Gene map
  • Chromosome 9 - Genomic Variants
  • Chromosome 9 - HAPMAP Project
  • Chromosome 9 - Genome Channel - ORNL
  • Chromosome 9 - LaunchPad HGMIS
  • Chromosome 9 - Human Protein Atlas
  • Chromosome 9 - Array BAC clone - Roswell Park Cancer Institute
  • Chromosome 9 - Human BAC Resource (NCBI)
  • Chromosome 9 FISH-mapped BACs (CCAP)
  • Genetic Maps (CHLC)
  • YACs mapped by FISH (Bari)
  • PCP (Partial Chromosome Paints) (Bari)
  • Mouse homology - OMIM - NCBI
  • Chromosome 9 Cancer GeneWeb
  • Chromosome 9 GeneCards (Weizmann)
  • Human Proteomics Initiative (Expasy)

  • Genes

    Annotated genes
    Ordered by Name Ordered by Location
     Kb pter-qter
    ABL1 133710.831 9q34.1
    ALDOB 104182.842 9q21.3-q22.2
    ANXA1 75766.781 9q21.13
    BAG1 33252.470 9p12
    CDK20 90581.359 9q22.1
    CDKN2A 21967.751 9p21
    CDKN2B 22002.902 9p21
    CKS2 91926.113 9q22
    CTSL 90340.974 9q21.33
    DAB2IP 124329.399 9q33.1-q33.3
    DAPK1 90112.756 9q34.1
    ENG 130577.291 9q34.11
    FANCC 97861.336 9q22.3
    FANCG 35073.835 9p13
    FNBP1 132649.466 9q34
    FOXE1 100615.537 9q22
    GFI1B 135854.098 9q34.13
    GNAQ 80331.190 9q21
    HNRNPK 86582.998 9q21.32-q21.33
    HSPA5 127997.127 9q33.3
    JAK2 4985.245 9p24
    KDM4C 6757.641 9p24-p23
    KLF4 110247.133 9q31
    LPAR1 113636.054 9q
    MELK 36572.859 9p13.1
    MIR126 139565.054 9q34.3
    MIR7-1 86584.663 9q21.32
    MLLT3 20344.968 9p22
    NOTCH1 139388.896 9q34.3
    NR4A3 102584.137 9q22
    NTRK2 87284.626 9q22.1
    NUP214 134000.948 9q34
    PAEP 138453.604 9q34
    PAX5 36833.272 9p13.2
    PPP2R4 131873.967 9q34
    PRRX2 132427.920 9q34.11
    PSIP1 15464.065 9p22.2
    PTCH1 98205.264 9q22.1-q31
    PTPRD 8314.246 9p24.1-p23
    RAPGEF1 134452.157 9q34.3
    RLN2 5299.866 9p24.1
    RMRP 35657.748 9p21-p12
    ROR2 94484.878 9q22
    SEMA4D 91975.706 9q22-q31
    SET 131445.934 9q34
    SH3GL2 17578.953 9p22
    STOML2 35099.889 9p13.1
    SYK 93564.012 9q22
    TAL2 108424.738 9q32
    TEK 27109.147 9p21
    TJP2 71736.180 9q13-q21
    TNC 117781.854 9q32-q34
    TNFSF15 117546.915 9q32
    TOPORS 32540.542 9p21
    TSC1 135766.735 9q34
    TXN 113006.092 9q31
    VCP 35056.065 9p13
    WNK2 95947.212 9q22.3
    XPA 100437.191 9q22.3
    Other genes
    possibly implicated
    in cancer
    Ordered by Name Ordered by Location
     Kb pter-qter
    ABCA1 107543.284 9q31
    ABCA2 139901.686 9q34
    ABO 136130.563 9q34.2
    ACER2 19408.925 9p21.3
    ACO1 32384.601 9p21.1
    ADAMTS13 136287.120 9q34
    ADAMTSL1 18474.079 9p21.3
    ADAMTSL2 136397.286 9q34.3
    AGPAT2 139567.595 9q34.3
    AK1 130628.759 9q34.1
    AK3 4709.557 9p24.1
    AKNA 117096.433 9q32
    ALAD 116148.592 9q32
    ALDH1A1 75515.578 9q21.13
    ALDH1B1 38392.661 9p13
    ALG2 101978.707 9q31.1
    AMBP 116822.408 9q32-q33
    ANAPC2 140069.236 9q34.3
    ANGPTL2 129849.628 9q34
    ANKRD18A 38571.361 9p13.1
    ANP32B 100745.489 9q22.32
    APTX 32972.604 9p13.3
    AQP3 33441.152 9p13
    ARHGEF39 35659.341 9p13.3
    ASPN 95218.489 9q22.31
    ASS1 133320.094 9q34.1
    ASTN2 119187.504 9q33
    B4GALT1 33110.639 9p13
    BARHL1 135457.993 9q34.13
    BICD2 95473.645 9q22.32
    BNC2 16409.501 9p22.2
    BRD3 136895.446 9q34
    BRINP1 121928.908 9q32-q33
    C5 123714.614 9q33-q34
    C9orf78 132589.564 9q34.2
    CA9 35673.915 9p13.3
    CARD9 139258.408 9q34
    CCL19 34689.567 9p13
    CCL21 34709.002 9p13
    CCL27 34661.893 9p13
    CD274 5450.503 9p24.1
    CD72 35609.976 9p
    CDC14B 99262.395 9q22.3
    CDK5RAP2 123151.147 9q33.3
    CDK9 130548.305 9q34.1
    CDKN2B-AS1 21994.790 9p21.3
    CEL 135937.365 9q34.3
    CELP 135957.926 9q34.3
    CHMP5 33264.877 9p13.3
    CIZ1 130928.344 9q34.1
    CLTA 36190.853 9p13.3
    CNTFR 34551.430 9p13
    CNTRL 123850.574 9q33.2
    COL5A1 137533.651 9q34.2-q34.3
    CORO2A 100883.257 9q22.3
    CRB2 126118.446 9q33.2
    CREB3 35732.317 9p13.3
    CTNNAL1 111704.851 9q31.2
    CTSV 99791.959 9q22.33
    DCAF12 34086.381 9p11.2
    DDX31 135469.676 9q34.2
    DDX58 32455.300 9p12
    DEC1 117904.097 9q32
    DENND1A 126141.933 9q34.11
    DENND4C 19230.763 9p22.1
    DFNB31 117164.360 9q32
    DIRAS2 93372.114 9q22.2
    DMRT1 841.690 9p24.3
    DMRT2 1050.354 9p24.3
    DMRT3 976.968 9p24.3
    DNAJA1 33025.209 9p13.3
    DNAJB5 34989.638 9p
    DNM1 130965.663 9q34
    DOCK8 273.048 9p24.3
    DPP7 140004.992 9q34.3
    ECM2 95257.594 9q22.3
    EDF1 139756.566 9q34.3
    EGFL7 139557.379 9q34.3
    EHMT1 140513.444 9
    ELAVL2 23690.103 9p21
    ENDOG 131580.779 9q34.1
    EPB41L4B 112002.012 9q22.1-q22.3
    ERCC6L2 98637.900 9q22.32
    FAM120A 96214.173 9q22.31
    FAM129B 130267.618 9q34.13
    FAM154A 18927.891 9p22.1
    FAM166A 140138.035 9q34.3
    FBP1 97365.421 9q22.3
    FBP2 97320.996 9q22.3
    FBXO10 37510.889 9p13.1
    FBXW2 123519.254 9q34
    FCN1 137801.431 9q34
    FCN2 137772.658 9q34
    FOCAD 20658.309 9p21
    FOXB2 79634.571 9q21.2
    FOXD4 116.231 9p24.3
    FOXD4L3 70917.783 9q13
    FOXD4L4 42717.234 9q13
    FPGS 130565.508 9cen-q34
    FRMD3 85857.905 9q21.33
    FUBP3 133454.960 9q34.11
    FUT7 139924.626 9q34.3
    FXN 71650.479 9q21.11
    GABBR2 101050.364 9q22.1-q22.3
    GADD45G 92219.927 9q22.1-q22.2
    GALNT12 101569.981 9q22.33
    GALT 34646.586 9p13
    GAS1 89559.277 9q21.3-q22
    GBA2 35736.863 9p13.2
    GCNT1 79074.068 9q13
    GDA 74764.267 9q21.13
    GGTA1P 124217.319 9q33.2
    GLDC 6532.464 9p22
    GNA14 80037.995 9q21
    GNE 36214.439 9p13.1
    GNG10 114423.851 9q31.3
    GOLGA2 131018.108 9q34.13
    GOLM1 88641.058 9q21.33
    GPSM1 139221.932 9q34.3
    GRHPR 37422.707 9q12
    GRIN1 140033.609 9q34.3
    GSN 124062.079 9q33
    HABP4 99212.414 9q22.3-q31
    HCCAT4 139506.480 9q34.3
    HEMGN 100689.073 9q22.33
    HINT2 35812.957 9p11.2
    HSD17B3 98997.589 9q22
    IER5L 131937.831 9q34.11
    IFN1@ 21077.105 9p22
    IFNA13 21367.371 9p22
    IFNA17 21227.242 9p22
    IFNA1 21440.453 9p22
    IFNA2 21384.254 9p22
    IFNB1 21077.104 9p22
    IFNK 27524.312 9p21.2
    IGFBPL1 38406.525 9p12
    IKBKAP 111629.800 9q31
    IL11RA 34652.182 9p13
    IL33 6215.786 9p24.1
    INIP 115448.791 9q32
    INPP5E 139323.067 9q34.3
    INSL4 5231.419 9p24
    KANK1 470.294 9p24.3
    KIAA1432 5629.119 9p24.1
    KLF9 72999.513 9q21.11
    LAMC3 133884.504 9q31-q34
    LCN2 130911.732 9q34
    LHX3 139088.096 9q34.3
    LHX6 124964.856 9q33.2
    LINC00032 27245.682 9p21
    LOC613206 127020.589 9q33
    LRRC26 140063.212 9q34.3
    MAN1B1 139981.379 9q34.3
    MAPKAP1 128199.673 9q34.11
    MED22 136207.751 9q34.1
    MIR101-2 4850.297 9p24.1
    MIR147A 123007.257 9q33.2
    MIR181A2 127454.721 9q33.3
    MIR181B2 127455.989 9q33.3
    MIR199B 131007.000 9q34.11
    MIR204 73424.891 9q21.12
    MIR219A2 131154.897 9q34.11
    MIR23B 97847.490 9q22.32
    MIR24-1 97848.303 9q22.32
    MIR27B 97847.727 9q22.32
    MIR2861 130548.197 9
    MIR31 21512.114 9p21.3
    MIR32 111808.509 9q31.3
    MIR455 116971.714 9q32
    MIR491 20716.104 9p21.3
    MIR601 126164.804 9q33.3
    MIR602 140732.871 9q34.3
    MIRLET7A1 96938.239 9q22.32
    MIRLET7D 96941.116 9q22.32
    MLANA 5890.909 9p24.1
    MRPL41 140446.309 9q34.3
    MTAP 21802.635 9p21
    MURC 103340.361 9q31.1
    MUSK 113431.051 9q31.3-q32
    NAIF1 130823.512 9q34.11
    NANS 100818.959 9p24.1-p23
    NEK6 127020.196 9q33.3-q34.11
    NELFB 140149.759 9q34
    NFIB 14081.842 9p24.1
    NFIL3 94171.327 9q22
    NINJ1 95883.771 9q22
    NOXA1 140317.847 9
    NPDC1 139933.909 9q34.3
    NPR2 35792.406 9p21-p12
    NR5A1 127243.515 9q33
    NR6A1 127279.554 9q33.3
    NRARP 140194.083 9q34.3
    NUDT2 34329.504 9p13
    OGN 95146.249 9q22
    OMD 95176.527 9q22.31
    OR13C5 107360.738 9q31.1
    OR13C9 107379.529 9
    ORM1 117085.303 9q31-qter
    ORM2 117092.069 9q31-qter
    PAPPA 118916.071 9q33.1
    PBX3 128510.478 9q33.3
    PCA3 79379.354 9q21.2
    PCSK5 78505.560 9
    PDCD1LG2 5510.545 9p24.2
    PHF19 123631.853 9q34.11
    PHF2 96338.909 9q22
    PHPT1 139743.256 9q34.3
    PIGO 35088.685 9p13.2
    PIP5K1B 71320.330 9q13
    PIP5KL1 130683.808 9q34.13
    PKN3 131464.802 9q34.13
    PLAA 26903.368 9p21
    PLIN2 19115.759 9p22.1
    POLE3 116169.519 9q33
    POMT1 134378.289 9q34.1
    PPP1R26 138371.648 9q34.3
    PPP3R2 104353.897 9q31
    PPP6C 127908.852 9q33.3
    PRKACG 71627.449 9q13
    PRPF4 116037.914 9q31-q33
    PRSS3 33750.464 9p13
    PRUNE2 79226.292 9q21.32
    PSAT1 80911.991 9q21.2
    PSMB7 127115.744 9q34.11-q34.12
    PTBP3 114979.995 9q32
    PTENP1 33673.502 9p13.3
    PTGDS 139871.956 9q34.2-q34.3
    PTGES2 130882.972 9q34.12
    PTGES 132500.615 9q34.3
    PTGR1 114325.247 9q32
    PTGS1 125133.284 9q32-q33.3
    PTPN3 112137.974 9q31
    QRFP 133768.815 9q34.12
    RAB14 123940.415 9q32-q34.11
    RAB1C 37636.934 9p13.1
    RABL6 139702.374 9q34.3
    RAD23B 110047.050 9q31.2
    RALGDS 135973.107 9q34.3
    RALGPS1 129724.504 9q33.3
    RASEF 85594.500 9q21.33
    RC3H2 125611.732 9q34
    RECK 36036.910 9p13.3
    REXO4 136271.182 9q34
    RFK 79000.433 9q21.31
    RGS3 116298.757 9q32
    RLN1 5334.932 9p24.1
    RMI1 86595.637 9q22.1
    RNF20 104296.131 9q22
    RNF38 36336.399 9p
    RORB 77112.252 9q22
    RPL7A 136215.069 9q34
    RPS6 19376.254 9p21
    RXRA 137218.316 9q34
    S1PR3 91606.324 9q22.1-q22.2
    SAPCD2 139956.579 9q34.3
    SARDH 136528.684 9q33-q34
    SCAI 127704.888 9q34.11
    SDCCAG3 139296.374 9q34.3
    SEC16A 139334.548 9q34.3
    SEC61B 101984.570 9q22.32-q31.3
    SETX 135136.827 9q34
    SH2D3C 130500.596 9q33.1-q33.3
    SHC3 91620.686 9q22.1
    SIGMAR1 34634.719 9p13.3
    SLC1A1 4490.427 9p24
    SLC28A3 86890.765 9q21.33
    SLC2A6 136336.216 9q34
    SLC2A8 130159.417 9q33.3
    SLC31A1 115983.808 9q32
    SLC31A2 115913.238 9q32
    SLC35D2 99082.988 9q22.33
    SLC44A1 108006.929 9q31.2
    SLC46A2 115641.200 9q32
    SMARCA2 2015.342 9p24.3
    SMC2 106856.831 9q31.1
    SMC5 72873.878 9q21.11
    SPIN1 91003.297 9q22.1
    SPTAN1 131314.837 9q34.11
    STX17 102668.915 9q31.1
    SURF1 136218.660 9q33-q34
    SUSD1 114803.061 9q31.3-q33.1
    SWI5 131038.425 9q34.13
    TAF1L 32629.452 9p12
    TESK1 35605.281 9p13
    TEX10 103064.357 9q31.1
    TGFBR1 101867.412 9q22
    TLE1 84198.598 9q21.32
    TLN1 35697.334 9p23-p21
    TLR4 120466.453 9q33.1
    TMEFF1 103235.520 9q31
    TMEM203 140098.535 9q34.3
    TMEM8B 35829.222 9p13.3
    TMOD1 100263.462 9q22
    TNFSF8 117663.425 9q33
    TOR2A 130493.803 9q34.11
    TPD52L3 6328.349 9p24.1
    TPM2 35682.923 9p13
    TRAF1 123664.671 9q33-q34
    TRAF2 139780.965 9q34
    TRIM32 119449.581 9q33.1
    TRPM6 77337.411 9q21.13
    TTF1 135250.937 9q34.3
    TUBB4B 140135.711 9q34.3
    TUSC1 25676.387 9p21.2
    TXNDC8 113065.867 9q31.3
    TYRP1 12693.386 9p23
    UBAP1 34179.003 9p13.3
    UBE2R2 33817.182 9p11.2
    UBQLN1 86274.878 9q22
    UGCG 114659.206 9q31
    UHRF2 6413.151 9p24.1
    VAV2 136627.016 9q34.1
    VLDLR 2621.793 9p24
    VPS13A 79792.361 9q21
    WDR5 137001.210 9q34
    ZBTB5 37438.100 9p13.1
    ZCCHC7 37120.469 9p13.1
    ZNF483 114287.439 9q32
    ZNF510 99518.147 9q22.33

    GeneCards  

    Contributor(s)

    WrittenJul 2004Philippe Dessen, Sakari Knuutila, Jean-Loup Huret
    UpdatedApr 2014Jean-Loup Huret, Philippe Dessen

    Citation

    This paper should be referenced as such :
    Dessen P, Knuutila S, Huret JL . Chromosome . Atlas Genet Cytogenet Oncol Haematol. Jul 2004 .
    URL : http://AtlasGeneticsOncology.org/Indexbychrom/idxa_9.html
    Dessen P, Huret JL . Chromosome . Atlas Genet Cytogenet Oncol Haematol. Apr 2014 .
    URL : http://AtlasGeneticsOncology.org/Indexbychrom/idxa_9.html
    © Atlas of Genetics and Cytogenetics in Oncology and Haematology
    indexed on : Fri Apr 18 17:44:23 CEST 2014

    Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case reports   Journals   Portal   Teaching   

    X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA