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Chromosome X

Chromosome X : G-banding, diagram and R-banding - Claude Léonard, Jean-Loup Huret
Chromosome X diagrams ISCN 2009 - Courtesy Nicole Chia

Leukaemia     

idic(X)(q13)
t(X;2)(q11;p23)
t(X;6)(p11;q23)
t(X;10)(p10;p10)
t(X;11)(q13;q23)
t(X;11)(q21;q23)
t(X;11)(q24;q23) (AML; SEPT6 and MLL; rare)
t(X;14)(q28;q11) (CLD; MTCP1 and TRA-D; rare)
t(X;20)(q13;q13.3)
t(X;21)(p11;q22)
t(X;21)(q26;q22)
t(X;21)(p22;q22)

Solid Tumors     

inv(X)(p11;q12)
t(X;1)(p11;q21)
t(X;17)(p11;q25)
t(X;17)(p11;q25)
t(X;17)(p11.2;q23)
t(X;17)(p11;q25)
t(X;18)(p11.2;q11.2)
(X;18)(p11;q11)
t(X;20)(p11;q13)

Cancer prone diseases     

Alport syndrome and diffuse leiomyomatosis
Bruton's agammaglobulinemia
Simpson-Golabi-Behmel syndrome

All Genes by Location (Kb)
Chromosome X by location

Losses / Amplicons     

BONE/SOFT TISSUE

External links     

  • Chromosome X - HUGO Chromosomes
  • Chromosome X - GoldenPath - Santa Cruz
  • Chromosome X - Ensembl Project
  • Chromosome X - Map View - NCBI
  • Chromosome X - OMIM Gene map
  • Chromosome X - Genomic Variants
  • Chromosome X - HAPMAP Project
  • Chromosome X - Genome Channel - ORNL
  • Chromosome X - LaunchPad HGMIS
  • Chromosome X - Human Protein Atlas
  • Chromosome X - Array BAC clone - Roswell Park Cancer Institute
  • Chromosome X - Human BAC Resource (NCBI)
  • Chromosome X FISH-mapped BACs (CCAP)
  • Genetic Maps (CHLC)
  • YACs mapped by FISH (Bari)
  • PCP (Partial Chromosome Paints) (Bari)
  • Mouse homology - OMIM - NCBI
  • Chromosome X Cancer GeneWeb
  • Chromosome X GeneCards (Weizmann)
  • Human Proteomics Initiative (Expasy)

    • Genes

    Annotated genes
    Ordered by Name Ordered by Location
     Kb pter-qter
    AIFM1 129263.340 Xq25-q26
    AMOT 112018.106 Xq23
    ARMCX1 100805.514 Xq21.33-q22.2
    ARMCX2 100910.268 Xq21.33-q22.2
    ARMCX3 100878.120 Xq21.33-q22.2
    AR 66763.874 Xq11.2-q12
    BRWD3 79931.683 Xq21.1
    BTK 100604.435 Xq21.33-q22
    CXCR3 70835.767 Xq13
    DKC1 153991.031 Xq28
    FAM123B 63404.998 Xq11.2
    FOXO4 70315.999 Xq13.1
    FOXP3 49106.898 Xp11.23
    GATA1 48644.982 Xp11.23
    GPC3 132669.776 Xq26.1
    IL3RA 1455.509 Xp22.3 or Yp11.3
    L1CAM 153126.974 Xq28
    MIR221 45605.597 Xp11.3
    MIR222 45606.432 Xp11.3
    MSN 64887.511 Xq11.2-q12
    MTCP1 154292.309 Xq28
    NONO 70503.042 Xq13.1
    RBBP7 16862.777 Xp22.2
    SEPT6 118750.911 Xq24
    SSX2 52780.308 Xp11.22
    TFE3 48886.242 Xp11.22
    Other genes
    possibly implicated
    in cancer
    Ordered by Name Ordered by Location
     Kb pter-qter
    ABCD1 152990.323 Xq28
    ACE2 15579.156 Xp22
    ACOT9 23721.778 Xp22.11
    ACSL4 108884.564 Xq22.3-q23
    AGTR2 115301.958 Xq22-q23
    AKAP14 119029.936 Xq24
    AKAP4 49955.411 Xp11.2
    ALAS2 55035.489 Xp11.21
    AMELX 11311.533 Xp22.31-p22.1
    AMMECR1 109437.415 Xq22.3
    APEX2 55026.780 Xp11.21
    APLN 128779.238 Xq25-q26.3
    ARAF 47420.516 Xp11.4-p11.2
    ARHGAP4 153172.830 Xq28
    ARHGAP6 11161.517 Xp22.3
    ARHGEF6 135747.714 Xq26.3
    ARHGEF9 62854.848 Xq11.1
    ARR3 69488.185 Xcen-q21
    ARSD 2822.012 Xp22.3
    ARX 25021.815 Xp21
    ASMTL 1522.032 Xp22.3; Yp11.3
    ATG4A 107334.934 Xq22.1-q22.3
    ATP6AP1 153656.978 Xq28
    ATP6AP2 40440.216 Xp11.4
    ATP7A 77166.194 Xq13.2-q13.3
    ATRX 76760.359 Xq13.1-q21.1
    AVPR2 153170.529 Xq28
    BCAP31 152965.947 Xq28
    BCORL1 129116.669 Xq25-q26.1
    BCOR 39910.501 Xp21.2-p11.4
    BEX1 102317.581 Xq21-q23|Xq22
    BEX2 102564.282 Xq22
    BGN 152760.347 Xq28
    BMP15 50653.735 Xp11.2
    BMX 15525.431 Xp22.2
    BRCC3 154299.710 Xq28
    BRS3 135570.125 Xq26-q28
    C1GALT1C1 119759.536 Xq24
    CAPN6 110488.328 Xq23
    CASK 41374.191 Xp11.4
    CCNB3 50027.540 Xp11
    CD40LG 135730.336 Xq26
    CD99L2 149934.810 Xq28
    CD99 2609.228 Xp22.32; Yp11.3
    CDK16 47082.417 Xp11.3-p11.23
    CDKL5 18460.344 Xp22
    CETN2 151995.873 Xq28
    CHIC1 72782.984 Xq13-q21
    CHM 85116.186 Xq21.2
    CITED1 71521.490 Xq13.1
    CLCN4 10124.985 Xp22.3
    CLDN2 106143.394 Xq22.3-q23
    COL4A5 107683.154 Xq22
    COL4A6 107398.838 Xq22
    COX7B 77154.961 Xq21.1
    CRLF2 1314.887 Xp22.3; Yp11.3
    CSAG1 151903.228 Xq28
    CSAG2 151927.734 Xq28
    CSF2RA 1387.693 Xp22.32 and Yp11.3
    CT45A1 134847.185 Xq26.3
    CT45A2 134866.214 Xq26.3
    CT45A3 134883.488 Xq26.3
    CT45A4 134866.214 Xq26.3
    CT45A5 134945.651 Xq26.3
    CT45A6 134963.216 Xq26.3
    CT47A10 120011.347 Xq24
    CT47A11 120011.347 Xq24
    CT47A1 120011.347 Xq24
    CT47A2 120011.347 Xq24
    CT47A3 120011.347 Xq24
    CT47A4 120011.347 Xq24
    CT47A5 120011.347 Xq24
    CT47A6 120067.697 Xq24
    CT47A7 120087.139 Xq24
    CT47A8 120011.347 Xq24
    CT47A9 120011.347 Xq24
    CT47B1 120006.454 Xq24
    CTAG1A 153813.418 Xq28
    CTAG1B 153813.418 Xq28
    CTAG2 153880.251 Xq28
    CTPS2 16606.124 Xp22
    CUL4B 119658.448 Xq23
    CXorf31 46746.855 Xp11.3
    CXorf48 134290.461 Xq26.3
    CYBB 37639.270 Xp21.1
    CYSLTR1 77528.131 Xq13.2-q21.1
    DACH2 85403.455 Xq21.3
    DCX 110537.008 Xq22.3-q23
    DDX26B 134654.555 Xq26.3
    DDX3X 41192.651 Xp11.3-p11.23
    DDX53 23018.087 Xp22.11
    DIAPH2 95939.662 Xq21.33
    DLG3 69674.946 Xq13.1
    DMD 31137.345 Xp21.2
    DUSP9 152907.897 Xq28
    EDA2R 65815.483 Xq12
    EDA 68835.911 Xq12-q13.1
    EFNB1 68048.840 Xq12
    EGFL6 13587.694 Xp22
    EIF1AX 20142.637 Xp22.12
    ELF4 129198.896 TUBGCP1
    ELK1 47494.921 ZP3-424, ZP3-372
    EMD 153607.597 FLJ38559
    ENOX2 129757.359 Xq25-q26.2
    ERAS 48687.283 Xp11.23
    ERCC6L 71424.507 Xq13.1
    F8 154064.070 Xq28
    FAM46D 79591.003 Xq21.1
    FANCB 14861.529 Xp22.2
    FGD1 54471.889 Xp11.21
    FGF13 137713.736 Xq26.3
    FGF16 76709.647 Xq13
    FHL1 135279.055 Xq26
    FIGF 15363.718 Xp22.31
    FLNA 153576.900 Xq28
    FOXR2 55649.833 Xp11.21
    G6PD 153759.606 Xq28
    GABRA3 151335.634 Xq28
    GAGE12I 49216.677 Xp11.4-p11.2
    GAGE1 49363.623 Xp11.4-p11.2
    GAGE2C 49197.596 Xp11.23
    GAGE2E 49188.104 Xp11.23
    GAGE3 49326.599 Xp11.4-p11.2
    GAGE4 49216.649 Xp11.4-p11.2
    GAGE5 49216.657 Xp11.4-p11.2
    GAGE6 49325.480 Xp11.4-p11.2
    GDI1 153665.259 Xq28
    GJB1 70443.056 Xq13.1
    GPC4 132435.064 Xq26.1
    GPR143 9693.454 Xp22.3
    GPR64 19007.433 Xp22.13
    GRIA3 122318.096 Xq25-q26
    GRIPAP1 48830.134 Xp11
    GRPR 16141.424 Xp22.2-p22.13
    GSPT2 51486.481 Xp11.22
    GUCY2F 108616.136 Xq22
    HCCS 11129.415 Xp22.3
    HCFC1 153213.010 Xq28
    HDAC6 48660.487 Xp11.23
    HDAC8 71549.367 Xq13
    HDHD1A 6966.961 Xp22.32
    HMGB3 150151.763 Xq28
    HPRT1 133594.175 Xq26.1
    HSD17B10 53458.206 Xp11.2
    HUWE1 53559.072 Xp11.22
    IGBP1 69353.298 Xq13.1-q13.3
    IKBKG 153770.459 Xq28
    IL13RA2 114238.539 Xq13.1-q28
    IL1RAPL1 28605.681 Xp22.1-p21.3
    IL2RG 70327.254 Xq13.1
    IL9R 155227.246 Xq28 and Yq12
    INE1 47064.325 Xp11.4-p11.3
    INGX 70711.530 Xq12
    IRAK1 153275.957 Xq28
    IRS4 107975.727 Xq22.3
    KAL1 8496.916 Xp22.32
    KCND1 48818.639 Xp11.23
    KDM5C 53220.504 Xp11.22-p11.21
    KDM6A 44732.423 Xp11.2
    KIF4A 69509.879 Xq13.1
    KLF8 56258.870 Xp11.21
    LAGE3 153705.241 Xq28
    LAMP2 119560.004 Xq24
    LCA10 153146.126 Xq28
    LDOC1 140269.940 Xq27
    LOC642869 84010.005 Xq21.1
    LONRF3 118108.713 Xq24
    LUZP4 114524.292 Xq23
    MAGEA10 151302.907 Xq28
    MAGEA11 148769.903 Xq28
    MAGEA12 151899.299 Xq28
    MAGEA1 152481.522 Xq28
    MAGEA2B 151885.384 Xq28
    MAGEA2 151883.119 Xq28
    MAGEA3 151934.653 Xq28
    MAGEA4 151081.361 Xq28
    MAGEA5 151282.529 Xq28
    MAGEA6 151867.245 Xq28
    MAGEA8 149009.941 Xq28
    MAGEA9B 148863.593 Xq28
    MAGEA9 148863.600 Xq28
    MAGEB10 27826.107 Xp21.3
    MAGEB16 35816.459 Xp21.1
    MAGEB18 26156.460 Xp21.3
    MAGEB1 30261.848 Xp21.3
    MAGEB2 30233.675 Xp21.3
    MAGEB3 30248.553 Xp21.3
    MAGEB4 30260.057 Xp21.3
    MAGEB6 26210.557 Xp21.3
    MAGEC1 140991.642 Xq26
    MAGEC2 141290.129 Xq27
    MAGEC3 140926.102 Xq27.2
    MAGED1 51546.155 Xp11.23
    MAGED2 54834.797 Xp11.2
    MAGED4B 51927.919 Xp11
    MAGED4 51928.008 Xp11.22
    MAGEE1 75648.046 Xq13.3
    MAGEE2 75002.823 Xq13.3
    MAGEH1 55478.538 Xp11.21
    MAP3K15 19378.176 Xp22.12
    MCF2 138663.930 Xq27
    MCTS1 119738.552 Xq22-q24
    MECP2 153295.688 Xq28
    MED14 40508.797 Xp11.4-p11.2
    MORF4L2 102930.428 Xq22
    MPP1 154006.960 Xq28
    MST4 131157.636 Xq26.2
    MTM1 149737.047 Xq28
    MUM1L1 105412.298 Xq22.3
    NAA10 153195.377 Xq28
    NAP1L6 72345.875 Xq13.2
    NDUFA1 119005.734 Xq24
    NGFRAP1 102632.109 Xq22.2
    NKRF 118722.302 Xq24
    NOX1 100098.314 Xq22
    NR0B1 30322.540 Xp21.3-p21.2
    NUDT11 51232.872 Xp11.22
    NXF3 102330.752 Xq22-q23
    OCRL 128674.252 Xq25-q26.1
    OGT 70794.075 Xq13
    OTC 38211.736 Xp21.1
    P2RY8 1581.466 Xp22.33; Yp11.3
    PAGE1 49452.056 Xp11.23
    PAGE4 49593.906 Xp11.23
    PAGE5 55246.792 Xp11.21
    PAK3 110187.513 Xq23
    PDHA1 19362.011 Xp22.2-p22.1
    PDK3 24483.344 Xp22.11
    PGK1 77359.666 Xq13
    PGRMC1 118370.211 Xq22-q24
    PHF6 133507.342 Xq26.3
    PHKA2 18910.417 Xp22.2-p22.1
    PIGA 15337.580 Xp22.1
    PIM2 48770.461 Xp11.23
    PIR 15402.926 Xp22.2
    PLAC1 133699.873 Xq26
    PLCXD1 198.061 Xp22.33; Yp11.32
    PLS3 114827.819 Xq23
    PNCK 152935.190 Xq28
    POLA1 24712.064 Xp22.1-p21.3
    PORCN 48367.371 Xp11.23
    PPEF1 18709.045 Xp22.2-p22.1
    PPP1R2P9 42636.618 Xp11.4-p11.3
    PPP1R3F 49126.317 Xp11.23
    PPP2R3B 294.669 Xp22.33; Yp11.3
    PRAF2 48928.820 Xp11.23
    PRDX4 23685.645 Xp22.11
    PRKX 3522.384 Xp22.3
    PRPS1 106871.654 Xq21.32-q24
    PSMD10 107327.437 Xq22.3
    RAB33A 129305.773 Xq26.1
    RAB39B 154487.527 Xq28
    RAB40AL 102192.200 Xq22.2
    RAB40A 102754.682 Xq22.1
    RAB41 69502.068 Xq13.1
    RAB9A 13707.341 Xp22.2
    RAB9B 103077.256 Xq22.1-q22.3
    RAP2C 131337.054 Xq25
    RBM10 47004.631 Xp11.23
    RBM3 48432.836 Xp11.2
    RBMX 135951.353 Xq26.3
    REPS2 16964.814 Xp22.2-p22.13
    RGN 46937.775 Xp11.3
    RLIM 73802.813 Xq13-q21
    RNF128 105937.068 Xq22.3
    RP1-177G6.2 139791.931 Xq27.1
    RPA4 96139.012 Xq21.33
    RPL10 153626.571 Xq28
    RPL36A 100645.948 Xq22.1
    RPS6KA3 20168.030 Xp22.2-p22.1
    RPS6KA6 83313.354 Xq21
    S100G 16668.281 Xp22.2
    SAGE1 134975.785 Xq26
    SASH3 128913.892 Xq26
    SAT1 23801.275 Xp22.1
    SCML1 17755.592 Xp22.2-p22.1
    SCML2 18257.433 Xp22
    SH2D1A 123480.148 Xq25-q26
    SH3KBP1 19552.084 Xp22.1-p21.3
    SLC25A5 118602.363 Xq24-q26
    SLC6A14 115567.774 Xq23-q24
    SMARCA1 128580.480 Xq25
    SMC1A 53401.072 Xp11.22-p11.21
    SPANXA1 140677.859 Xq27.1
    SPANXB1 140084.756 Xq27.1
    SPANXB2 140084.756 Xq27.1
    SPANXC 140335.597 Xq27.1
    SPANXD 140785.569 Xq27.1
    SPANXE 140785.569 Xq27.1
    SPANXN1 144329.107 Xq27
    SRPX2 99899.163 Xq21.33-q23
    SRPX 38008.589 Xp21.1
    SSR4 153060.094 Xq28
    SSX1 48114.797 Xp11.23-p11.22
    SSX2B 52780.308 Xp11.22
    SSX3 48205.863 Xp11.23
    SSX4B 48242.968 Xp11.23
    SSX4 48242.968 Xp11.23
    SSX5 48045.656 Xp11.23
    SSX6 47969.361 Xp11.2
    SSX7 52673.111 Xp11.23
    SSX8 52651.984 Xp11.23
    SSX9 48154.885 Xp11.23
    STS 7137.472 Xp22.32
    SUV39H1 48555.131 Xp11.23
    SYP 49044.265 Xp11.23-p11.22
    TAB3 30845.560 Xp21.2
    TAF1 70586.114 Xq13.1
    TAZ 153639.877 Xq28
    TCEAL1 102883.892 Xq22.1
    TCEAL4 102840.419 Xq22.2
    TCEAL7 102585.165 Xq22.1
    TDGF3 109763.539 Xq22.3
    TEX13A 104463.612 Xq22.3
    TGIF2LX 89176.940 Xq21.31
    TIMM17B 48750.731 Xp11.23
    TIMM8A 100603.027 Xq22.1
    TIMP1 47441.690 Xp11.3-p11.23
    TKTL1 153524.027 Xq28
    TLR7 12885.202 Xp22.3
    TLR8 12924.739 Xp22
    TMSB15A 101768.611 Xq21.33-q22.3
    TMSB15B 103217.200 Xq22.2
    TMSB4X 12993.226 Xq21.3-q22
    TREX2 152710.179 Xq28
    TRO 54947.249 Xp11.22-p11.21
    TSC22D3 106956.460 Xq22.3
    TSPAN7 38420.731 Xp11.4
    TSPYL2 53111.542 Xp11.2
    UBA1 47053.201 Xp11.23
    UBE2A 118708.499 Xq24-q25
    UBE2NL 142967.173 Xq27.3
    UPRT 74493.894 Xq13.3
    USP11 47092.314 Xp11.23
    USP9X 40944.888 Xp11.4
    UTP14A 129040.097 Xq26.1
    UXT 47511.196 Xp11.23-p11.22
    VBP1 154444.701 Xq28
    VENTXP1 26576.453 Xp21.3
    VSIG1 107288.200 Xq22.3
    WAS 48542.186 Xp11.4-p11.21
    XAGE1A 52541.055 Xp11.22
    XAGE1B 52238.810 Xp11.22
    XAGE1D 52238.810 Xp11.22
    XAGE2 52112.078 Xp11.22
    XAGE3 52891.560 Xp11.22-p11.21
    XAGE5 52841.228 Xp11.22
    XIAP 122994.048 Xq25
    XIST 73043.161 Xq13.2
    ZBTB33 119384.607 Xq23
    ZC4H2 64136.262 Xq11.2
    ZDHHC9 128938.915 Xq26.1
    ZIC3 136648.346 Xq26.2
    ZNF185 152082.997 Xq28

    GeneCards  

    Contributor(s)

    WrittenJul 2004Philippe Dessen, Sakari Knuutila, Jean-Loup Huret
    UpdatedJul 2010Jean-Loup Huret, Philippe Dessen

    Citation

    This paper should be referenced as such :
    Dessen P, Knuutila S, Huret JL . Chromosome . Atlas Genet Cytogenet Oncol Haematol. Jul 2004 .
    URL : http://AtlasGeneticsOncology.org/Indexbychrom/idxa_X.html
    Dessen P, Huret JL . Chromosome . Atlas Genet Cytogenet Oncol Haematol. Jul 2010 .
    URL : http://AtlasGeneticsOncology.org/Indexbychrom/idxa_X.html
    © Atlas of Genetics and Cytogenetics in Oncology and Haematology
    indexed on : Fri Jul 16 13:33:17 CEST 2010
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