Atlas of Genetics and Cytogenetics in Oncology and Haematology


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List of all cancer genes by chromosome

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

- chromosome Y -

Symbol(↓)GoldenPath hg19 (Mb)(↓)Location(↓)Description
ASMTL-AS1 1470.936 Xp22.33; Yp11.32 ASMTL antisense RNA 1
SRY 2654.896 Yp11.3 sex determining region Y
RPS4Y1 2709.623 Yp11.3 ribosomal protein S4, Y-linked 1
ZFY 2803.518 Yp11.3 zinc finger protein, Y-linked
LINC00278 2871.037 - long intergenic non-protein coding RNA 278
TGIF2LY 3447.126 Yp11.2 TGFB induced factor homeobox 2 like, Y-linked
PCDH11Y 4868.267 Yp11.2 protocadherin 11 Y-linked
TSPY2 6114.264 Yp11.2 testis specific protein, Y-linked 2
LINC00280 6225.260 Yp11.2 long intergenic non-protein coding RNA 280
TTTY1B 6258.442 Yp11.2 testis-specific transcript, Y-linked 1B (non-protein coding)
TTTY1 6258.442 Yp11.2 testis-specific transcript, Y-linked 1 (non-protein coding)
TTTY21B 6311.475 Yp11.2 testis-specific transcript, Y-linked 21B (non-protein coding)
TTTY21 6311.475 Yp11.2 testis-specific transcript, Y-linked 21 (non-protein coding)
TTTY7B 6317.509 Yp11.2 testis-specific transcript, Y-linked 7B (non-protein coding)
TTTY7 6317.509 Yp11.2 testis-specific transcript, Y-linked 7 (non-protein coding)
AMELY 6733.959 Yp11.2 amelogenin, Y-linked
TBL1Y 6778.727 Yp11.2 transducin (beta)-like 1, Y-linked
TTTY16 7567.398 Yp11.2 testis-specific transcript, Y-linked 16 (non-protein coding)
TTTY12 7672.965 Yp11.2 testis-specific transcript, Y-linked 12 (non-protein coding)
LINC00279 8506.335 Yp11.2 long intergenic non-protein coding RNA 279
TTTY18 8551.411 Yp11.2 testis-specific transcript, Y-linked 18 (non-protein coding)
TTTY19 8572.513 Yp11.2 testis-specific transcript, Y-linked 19 (non-protein coding)
TTTY11 8651.359 Yp11.2 testis-specific transcript, Y-linked 11 (non-protein coding)
RBMY1A3P 9154.670 Yp11.2 RNA binding motif protein, Y-linked, family 1, member A3 pseudogene
TTTY20 9167.489 Yp11.2 testis-specific transcript, Y-linked 20 (non-protein coding)
FAM197Y2P 9187.189 Yp11.2 family with sequence similarity 197, Y-linked, member 2, pseudogene
FAM197Y2 9187.189 Yp11.2 family with sequence similarity 197, Y-linked, member 2, pseudogene
FAM197Y5P 9187.189 Yp11.2 family with sequence similarity 197 Y-linked member 5, pseudogene
FAM197Y5 9187.189 Yp11.2 family with sequence similarity 197, Y-linked, member 5, pseudogene
TSPY4 9195.452 Yp11.2 testis specific protein, Y-linked 4
TSPY8 9195.452 Yp11.2 testis specific protein, Y-linked 8
TSPY3 9236.030 Yp11.2 testis specific protein, Y-linked 3
TSPY10 9236.049 Yp11.2 testis specific protein, Y-linked 10
TSPY1 9304.564 Yp11.2 testis specific protein, Y-linked 1
LOC105379270 9362.880 - uncharacterized LOC105379270
RBMY3AP 9448.330 Yp11.2 RNA binding motif protein, Y-linked, family 3, member A pseudogene
TTTY8B 9528.709 Yp11.2 testis-specific transcript, Y-linked 8B (non-protein coding)
TTTY8 9528.709 Yp11.2 testis-specific transcript, Y-linked 8 (non-protein coding)
TTTY2B 9573.895 Yp11.2 testis-specific transcript, Y-linked 2B (non-protein coding)
TTTY2 9573.895 Yp11.2 testis-specific transcript, Y-linked 2 (non-protein coding)
TTTY22 9638.762 Yp11.2 testis-specific transcript, Y-linked 22 (non-protein coding)
TTTY23B 9748.407 Yp11.2 testis-specific transcript, Y-linked 23B (non-protein coding)
TTTY23 9748.407 Yp11.2 testis-specific transcript, Y-linked 23 (non-protein coding)
GYG2P1 14517.915 Yq11.21 glycogenin 2 pseudogene 1
TTTY15 14774.298 Yq11.1 testis-specific transcript, Y-linked 15 (non-protein coding)
USP9Y 14813.160 Yq11.2 ubiquitin specific peptidase 9, Y-linked
DDX3Y 15016.019 Yq11 DEAD-box helicase 3, Y-linked
UTY 15360.259 Yq11 ubiquitously transcribed tetratricopeptide repeat containing, Y-linked
TMSB4Y 15815.447 Yq11.221 thymosin beta 4, Y-linked
VCY 16168.098 Yq11.221 variable charge, Y-linked
VCY1B 16168.102 Yq11.21 variable charge, Y-linked 1B
NLGN4Y 16733.901 Yq11.221 neuroligin 4, Y-linked
NLGN4Y-AS1 16905.522 - NLGN4Y antisense RNA 1
FAM41AY1 19612.838 Yq11.221 family with sequence similarity 41, member A, Y-linked 1
FAM41AY2 19612.838 Yq11.2 family with sequence similarity 41, member A, Y-linked 2
CDY2A 20137.667 Yq11.221 chromodomain protein, Y-linked, 2A
CDY2B 20137.668 Yq11.222 chromodomain protein, Y-linked, 2B
XKRY2 20297.335 Yq11.221 XK, Kell blood group complex subunit-related, Y-linked 2
XKRY 20297.335 Yq11.222 XK, Kell blood group complex subunit-related, Y-linked
FAM224A 20488.419 Yq11.222 family with sequence similarity 224, member A (non-protein coding)
FAM224B 20488.440 Yq11.221 family with sequence similarity 224, member B (non-protein coding)
HSFY1 20708.574 Yq11.222 heat shock transcription factor, Y-linked 1
HSFY2 20708.577 Yq11.222 heat shock transcription factor, Y linked 2
TTTY9A 20891.768 Yq11.222 testis-specific transcript, Y-linked 9A (non-protein coding)
TTTY9B 20891.768 Yq11.221 testis-specific transcript, Y-linked 9B (non-protein coding)
TTTY14 21094.585 Yq11.222 testis-specific transcript, Y-linked 14 (non-protein coding)
CD24 21152.526 6q21 CD24 molecule
CD24P4 21152.919 Yq11.222 CD24 molecule pseudogene 4
LOC107987345 21203.567 Yq11.222 uncharacterized LOC107987345
BCORP1 21617.317 Yq11.222 BCL6 corepressor pseudogene 1
TXLNGY 21729.268 Yq11.222 taxilin gamma pseudogene, Y-linked
KDM5D 21867.301 Yq11 lysine demethylase 5D
TTTY10 22627.554 Yq11.221 testis-specific transcript, Y-linked 10 (non-protein coding)
EIF1AY 22737.597 Yq11.223 eukaryotic translation initiation factor 1A, Y-linked
RPS4Y2 22917.954 Yq11.223 ribosomal protein S4, Y-linked 2
PRORY 23544.860 Yq11.223 proline rich, Y-linked
RBMY2EP 23557.034 Yq11.223 RNA binding motif protein, Y-linked, family 2, member E pseudogene
RBMY1B 23673.224 Yq11.223 RNA binding motif protein, Y-linked, family 1, member B
RBMY1A1 23673.258 Yq11.23 RNA binding motif protein, Y-linked, family 1, member A1
RBMY1D 23673.264 Yq11.223 RNA binding motif protein, Y-linked, family 1, member D
RBMY1E 23673.264 Yq11.223 RNA binding motif protein, Y-linked, family 1, member E
TTTY13 23745.486 Yq11.223 testis-specific transcript, Y-linked 13 (non-protein coding)
TTTY6 24291.112 Yq11.223 testis-specific transcript, Y-linked 6 (non-protein coding)
TTTY6B 24291.134 Yq11.223 testis-specific transcript, Y-linked 6B (non-protein coding)
TTTY5 24442.945 Yq11.223 testis-specific transcript, Y-linked 5 (non-protein coding)
RBMY2FP 24455.006 Yq11.223 RNA binding motif protein, Y-linked, family 2, member F pseudogene
RBMY1F 24455.010 Yq11.223 RNA binding motif protein, Y-linked, family 1, member F
LOC100652931 24462.825 Yq11.223 RNA binding motif protein, Y-linked, family 1, member A1 pseudogene
RBMY1J 24549.623 Yq11.223 RNA binding motif protein, Y-linked, family 1, member J
LOC101929148 24585.087 Yq11.223 uncharacterized LOC101929148
PRY2 24636.544 Yq11.223 PTPN13-like, Y-linked 2
PRY 24636.544 Yq11.223 PTPN13-like, Y-linked
TTTY17A 24997.731 Yq11.2 testis-specific transcript, Y-linked 17A (non-protein coding)
TTTY17B 24997.731 Yq11.223 testis-specific transcript, Y-linked 17B (non-protein coding)
TTTY17C 24997.731 Yq11.223 testis-specific transcript, Y-linked 17C (non-protein coding)
TTTY4B 25082.602 Yq11.223 testis-specific transcript, Y-linked 4B (non-protein coding)
TTTY4C 25082.602 Yq11.223 testis-specific transcript, Y-linked 4C (non-protein coding)
TTTY4 25082.602 Yq11.2 testis-specific transcript, Y-linked 4 (non-protein coding)
BPY2B 25130.410 Yq11.223 basic charge, Y-linked, 2B
BPY2C 25130.410 Yq11.223 basic charge, Y-linked, 2C
BPY2 25130.410 Yq11 basic charge, Y-linked, 2
DAZ1 25275.502 Yq11.223 deleted in azoospermia 1
DAZ3 25365.581 Yq11.223 deleted in azoospermia 3
DAZ2 25365.604 Yq11.223 deleted in azoospermia 2
DAZ4 26979.967 Yq11.223 deleted in azoospermia 4
GOLGA2P2Y 27601.458 Yq11.23 golgin A2 pseudogene 2, Y-linked
GOLGA2P3Y 27601.458 Yq11.223 golgin A2 pseudogene 3, Y-linked
CSPG4P1Y 27629.055 Yq11.23 chondroitin sulfate proteoglycan 4 pseudogene 1, Y-linked
CDY1B 27768.264 Yq11.223 chromodomain protein, Y-linked, 1B
CDY1 27768.264 Yq11.23 chromodomain protein, Y-linked, 1
TTTY3B 27874.637 Yq11.223 testis-specific transcript, Y-linked 3B (non-protein coding)
TTTY3 27874.637 Yq11.23 testis-specific transcript, Y-linked 3 (non-protein coding)
PRYP4 28121.696 Yq11.223 PTPN13-like, Y-linked pseudogene 4
WASH2P 59354.361 2q13 WAS protein family homolog 2 pseudogene
WASH6P 59356.038 Xq28;Yq12 WAS protein family homolog 6 pseudogene


These entries belong to a list of genes implicated in cancer which is a compilation of genes
from Atlas of Genetics and Cytogenetics and some other genes selected for their interest.


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