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Chromosome 5

Chromosome 5 : G-banding, diagram and R-banding - Claude Léonard, Jean-Loup Huret

Leukaemia     

t(1;5)(p32;q31)
t(1;5)(q21;q33) (MPD; TPM3/PDGFRB; rare)
t(1;5)(q22;q33)
t(2;5)(p23;q35)
t(3;5)(q25;q34)
t(3;5)(q21;q31)/ANLL (AML; ---; not rare)
t(3;5)(q26;q34)
t(4;5)(q31;q31)
del(5q) in myeloid malignancies
i(5)(p10) in acute myeloid leukemia
Trisomy 5
t(5;7)(q33;q11)
t(5;9)(q33;q22)
t(5;10)(q33;q21)
ins(5;11)(q31;q13q23)
t(5;11)(q31;q23)
t(5;11)(q35;p15.5)
t(5;12)(q33;p13)
t(5;12)(q31;p13) in MDS, AML and AEL
t(5;14)(q33;q32) PDGFRB/TRIP11
t(5;14)(q33;q24)
t(5;14)(q33;q32) PDGFRB/KIAA1509
t(5;14)(q35;q11) (T-ALL; RanBP17or HOX11L2/TCR; rare)
t(5;14)(q35;q11) (CLL ; NKX2-5 and TRD; rare)
t(5;14)(q35;q32)
t(5;14)(q35;q32.2)
t(5;14)(q31;q32)
t(5;15)(p15;q11-13)
t(5;15)(q33;q22)
t(5;16)(q33;q22) (AML; - ; rare)
dic(5;17)(q11;p11) (MDS, ANLL; -; not rare)
t(5;17)(q13;q21)
t(5;17)(q33;p11.2)
t(5;17)(q33;p13) (MDS; PDGFRb and RABEP1; rare)
t(5;17)(q35;q21)
t(5;21)(q13;q22)

Solid Tumors     

Cancer prone diseases     

Cockayne syndrome
Hereditary Desmoid Disease.
Sotos syndrome
Familial adenomatous polyposis (FAP)

All Genes by Location (Kb)
Chromosome 5 by location

Losses / Amplicons     

BONE/SOFT TISSUE

External links     

  • Chromosome 5 - HUGO Chromosomes
  • Chromosome 5 - GoldenPath - Santa Cruz
  • Chromosome 5 - Ensembl Project
  • Chromosome 5 - Map View - NCBI
  • Chromosome 5 - GDB (Genome Data Base)
  • Chromosome 5 - OMIM Gene map
  • Chromosome 5 - Genomic Variants
  • Chromosome 5 - HAPMAP Project
  • Chromosome 5 - Genome Channel - ORNL
  • Chromosome 5 - LaunchPad HGMIS
  • Chromosome 5 - Human Protein Atlas
  • Chromosome 5 - SpliceNest
  • Human BAC Resource (NCBI)
  • FISH-mapped BACs (CCAP)
  • Genetic Maps (CHLC)
  • YACs mapped by FISH (Bari)
  • PCP (Partial Chromosome Paints) (Bari)
  • Positional Cloning Project (Berlin Dahlem)
  • Mouse homology - OMIM - NCBI
  • Cancer GeneWeb
  • GeneCards (Weizmann)
  • Human Proteomics Initiative (Expasy)

    • Genes

    Annotated genes
    Ordered by Name Ordered by Location
     Kb pter-qter
    PDCD6 324.736 5p15.33
    PRLR 35099.985 5p14-p13
    ERCC8 60205.416 5q12.1
    ENC1 73958.990 5q13
    MSH3 79986.050 5q11-q12
    APC 112101.455 5q21-q22
    FNIP1 131005.306 5q23.3
    IL3 131424.246 5q23-q31
    IRF1 131846.684 5q23-q31
    AFF4 132238.970 5q31
    HDAC3 140980.627 5q31.1-q31.2
    ARHGAP26 142130.476 5q31
    SPINK7 147672.183 5q32
    CSNK1A1 148855.038 5q32
    CSF1R 149413.051 5q32
    PDGFRB 149473.595 5q31-q32
    ITK 156540.485 5q31-q32
    PTTG1 159781.443 5q35.1
    TLX3 170668.893 5q35.1
    NPM1 170747.403 5q35
    NKX2-5 172591.744 5q34
    NSD1 176493.439 5q35
    MAPK9 179595.390 5q35
    GNB2L1 180596.534 5q35.3
    Other genes
    possibly implicated
    in cancer
    Ordered by Name Ordered by Location
     Kb pter-qter
    PLEKHG4B 193.373 5p15.33
    AHRR 357.291 5p15.33
    EXOC3 496.334 5p15.33
    SLC9A3 526.334 5p15.3
    TPPP 712.977 5p15.33
    ZDHHC11 848.722 5p15.2
    NKD2 1062.168 5p15.3
    SLC12A7 1103.489 5p15
    TERT 1306.287 5p15.33
    CLPTM1L 1371.000 5p15.33
    SLC6A3 1445.910 5p15.3
    IRX2 2799.880 5p15.33
    IRX1 3649.168 5p15.33
    ADAMTS16 5193.443 5p15
    NSUN2 6652.352 5p15.32
    SRD5A1 6686.500 5p15.31
    POLS 6767.718 5p15
    ADCY2 7449.343 5p15.3
    MTRR 7922.217 5p15.31
    SEMA5A 9088.138 5p15.2
    CCT5 10303.282 5
    ROPN1L 10495.009 5p15
    DAP 10732.342 5p15.2
    CTNND2 11024.952 5p15.2
    TAG 12627.968 -
    TRIO 14196.829 5p14-p15.1
    ANKH 14757.909 5p15.2-p15.1
    FBXL7 15553.305 5p15.1
    FAM134B 16526.147 5p15.1
    CDH18 19508.912 5p14.3
    CDH12 21786.911 5p14.3
    CDH6 31229.553 5p13.3
    RNASEN 31436.359 5q11.2
    PDZD2 31834.788 5p13.3
    MTMR12 32262.868 5p15.33
    ADAMTS12 33563.044 5q35
    SLC45A2 33981.729 5p13.3
    AMACR 34023.657 5p13.2-q11.1
    C1QTNF3 34053.720 5p13
    RAD1 34941.123 5p13
    SKP2 36187.946 5p13
    SLC1A3 36642.214 5p13
    NIPBL 36912.618 5p13.2
    GDNF 37851.510 5p13.1-p12
    LIFR 38510.822 5p13-p12
    OSMR 38881.893 5p13.2
    RICTOR 38973.780 5p13.1
    DAB2 39407.537 5p13
    PTGER4 40715.789 5p13.1
    PRKAA1 40795.238 5p12
    CARD6 40877.167 5p13.1
    C7 40945.356 5p13
    PLCXD3 41342.805 5p13.1
    FBXO4 41961.113 5p12
    GHR 42459.783 5p13-p12
    SEPP1 42835.739 5q31
    MGC42105 43228.084 5p12
    FGF10 44340.854 5p13-p12
    MRPS30 44844.784 5q11
    HCN1 45295.109 5p12
    ITGA1 52119.893 5q11.1
    ITGA2 52320.913 5q11.2
    FST 52812.352 5q11.2
    HSPB3 53787.202 5q11.2
    ESM1 54309.900 5q11
    CCNO 54562.738 5q11.2
    DHX29 54587.830 5q11.2
    PPAP2A 54756.440 5q11
    DDX4 55070.533 5p15.2-p13.1
    IL31RA 55183.091 5q11.2
    IL6ST 55272.451 5q11
    MAP3K1 56146.657 5q11.2
    PLK2 57785.567 5q12.1-q13.2
    RAB3C 57914.696 5q13
    PDE4D 58300.623 5q12
    PART1 59819.515 5q12.1
    NDUFAF2 60276.713 5q12.1
    IPO11 61744.351 5q12.1
    SDCCAG10 64100.511 5q12.3
    ADAMTS6 64480.319 5q13
    ERBB2IP 65258.140 5p14.3-q12.3
    MAST4 66160.360 5q12.3
    CD180 66513.860 5q12
    PIK3R1 67622.251 5q13.1
    CCNB1 68498.669 5q12
    CENPH 68521.131 5p15.2
    CDK7 68566.378 5q12.1
    TAF9 68683.309 5q11.2-q13.1
    RAD17 68702.288 5q13
    OCLN 68823.875 5q13.1
    GTF2H2 68891.810 5q13.2
    GTF2H2B 68891.825 5q13.2
    NAIP 70300.066 5q13.1
    MAP1B 71438.874 5q13
    TNPO1 72148.174 5q13.1
    FOXD1 72777.841 5q12-q13
    BTF3 72830.006 5q13.3
    POLK 74843.337 5q13
    IQGAP2 75734.905 5q
    F2R 76047.624 5q13
    F2RL1 76150.610 5q13
    JMY 78569.043 5q14.1
    THBS4 79366.747 5q13
    DHFR 79957.801 5q11.2-q13.2
    RASGRF2 80292.314 5q13
    CKMT2 80564.895 5
    SSBP2 80751.428 5q14.1
    XRCC4 82409.073 5q14.2
    VCAN 82803.286 5q12-q14
    EDIL3 83273.882 5q14
    RASA1 86599.907 5q13
    CCNH 86725.838 5q13.3-q14
    MEF2C 88051.922 5q14
    NR2F1 92944.799 5q14
    RHOBTB3 95092.606 5q15
    GLRX 95175.309 5q14
    ELL2 95246.558 5q15
    PCSK1 95751.875 5q15-q21
    ERAP1 96135.944 5q15
    ERAP2 96237.400 5q15
    LNPEP 96297.102 5q15
    RIOK2 96524.397 5q14
    CHD1 98218.808 5q15-q21
    ST8SIA4 100170.803 5q21
    PAM 102229.426 5q
    RAB9P1 104463.075 5q21.2
    EFNA5 106740.489 5q21
    FER 108111.422 5q21
    CAMK4 110587.981 5q21-q23
    STARD4 110861.921 5q22
    C5orf13 111092.892 5q22.1
    ZRSR1 112255.207 5q22
    MCC 112385.695 5q21-q22
    TRIM36 114534.699 5q22
    PGGT1B 114574.426 5q23.1
    TNFAIP8 118632.317 5q23.1
    LOX 121429.918 5q23.3-q31.2
    CSNK1G3 122875.692 5q23
    ALDH7A1 125906.817 5q31
    SLC12A2 127447.382 5q23.3
    ADAMTS19 128824.002 5q31
    RAPGEF6 130789.503 5q31.1
    ACSL6 131317.051 5q31
    CSF2 131437.384 5q23-q31
    PDLIM4 131621.286 5q31.1
    IL5 131905.035 5q23-q31
    RAD50 131920.529 5q23-q31
    IL13 132021.764 5q31
    IL4 132037.272 5q23-q31
    SEPT8 132114.408 5q31
    GDF9 132224.777 5q31.1
    HSPA4 132415.561 5q31.1
    TCF7 133478.301 5q31
    SKP1 133519.981 5q31
    TCEB1P 133521.324 7q11.21
    PPP2CA 133560.047 5q23-q31
    CDKL3 133662.014 5q31
    UBE2B 133734.769 5q31.1
    CAMLG 134102.105 5q23
    DDX46 134122.360 5q31.1
    PITX1 134391.323 5q31.1
    CXCL14 134934.274 5q31
    IL9 135255.834 5q31-q35
    FBXL21 135300.162 5q31
    TGFBI 135392.483 5q31
    SMAD5 135496.435 5q31
    SPOCK1 136338.886 5q31.2
    WNT8A 137447.673 5q31
    KIF20A 137542.316 5q31
    CDC23 137551.236 5q31
    CDC25C 137648.858 5q31
    JMJD1B 137716.184 5q31
    EGR1 137829.080 5q23-q31
    ETF1 137869.683 5q31.2
    HSPA9 137918.923 5q31.1
    CTNNA1 138117.006 5q31.2
    SLC23A1 138730.788 5q31.2
    MGC29506 138751.156 5q23-q31
    DNAJC18 138775.279 5q31.2
    UBE2D2 138920.935 5q31.3
    NRG2 139207.444 5q23-q33
    PURA 139473.892 5q31
    HBEGF 139692.612 5q23
    ANKHD1 139761.613 5q31.3
    SRA1 139909.837 5q31.3
    CD14 139991.501 5q22-q32
    DND1 140030.565 5q31.3
    HARS 140033.674 5q31.3
    TAF7 140678.241 5q31
    PCDHGA5 140724.082 5q31
    PCDHGC3 140835.753 5q31
    DIAPH1 140874.772 5q31
    FCHSD1 140999.053 5q31.3
    PCDH1 141222.401 5q31.3
    RNF14 141328.806 5q23.3-q31.1
    SPRY4 141670.176 5q31.3
    FGF1 141953.306 5q31.3-q33.2
    NR3C1 142637.689 5q31.3
    HMHB1 143171.919 5q32
    YIPF5 143517.920 5q31.3
    LARS 145472.782 5q32
    POU4F3 145698.869 5q32
    PPP2R2B 145949.261 5q32
    DPYSL3 146750.564 5q32
    SPINK1 147184.336 5q32
    SPINK5 147423.728 5q31-q32
    FBXO38 147743.739 5q33.1
    ADRB2 148186.349 5q31-q32
    PPARGC1B 149090.057 5q33.1
    MIRN378 149092.581 5
    SLC26A2 149320.493 5q31-q34
    CDX1 149526.537 5q32
    CAMK2A 149579.248 5
    CD74 149761.393 5q31-q33
    RBM22 150050.549 5q33.1
    GPX3 150380.192 5q23
    ANXA6 150460.461 5q33.1
    SLC36A1 150807.356 5q33.1
    FAT2 150863.846 5q33.1
    SPARC 151021.202 5q31-q33
    ATOX1 151102.576 5q32
    G3BP1 151131.669 5q33.1
    SAP30L 153805.776 5q33.2
    CNOT8 154218.391 5q31-q33
    GEMIN5 154247.169 5q33.2
    HAVCR1 156389.109 5q33.2
    HAVCR2 156445.421 5q33.3
    ADAM19 156841.020 5q33.3
    IL12B 158674.369 5q31.1-q33.1
    ADRA1B 159276.318 5q23-q32
    FABP6 159558.626 5q23-q35
    C1QTNF2 159707.353 5q33.3
    MIRN146A 159844.937 5
    CCNG1 162797.155 5q32-q34
    HMMR 162820.241 5q33.2-qter
    MAT2B 162865.163 5q34-q35
    WWC1 167651.670 5q34
    DOCK2 168996.871 5q35.1
    FOXI1 169465.495 5q34
    LCP2 169607.666 5q33.1-qter
    KCNMB1 169737.745 5q34
    GABRP 170143.343 5q33-q34
    RANBP17 170221.600 5q34
    FGF18 170779.272 5q34
    STK10 171401.679 5q35.1
    DUSP1 172127.707 5q35.1
    BNIP1 172504.051 5q33-q34
    STC2 172674.332 5q35.2
    MSX2 174084.181 5q35.2
    HRH2 175042.318 5q35.2
    HSPC111 175743.838 5q35.2
    CLTB 175752.062 5q35.2
    RNF44 175886.306 5q35.3
    PCDH24 175908.971 5q35.2
    UNC5A 176170.166 5q35.3
    HK3 176240.476 5q35.2
    UIMC1 176264.612 5q35.2
    FGFR4 176446.527 5q33-qter
    RAB24 176660.805 5q35.3
    RGS14 176717.450 5q35.3
    GRK6 176786.293 5q35
    PDLIM7 176843.001 5q35.3
    DDX41 176871.184 5q35.3
    B4GALT7 176959.778 5q35.1-q35.3
    PROP1 177351.842 5q35.3
    NOLA2 177509.072 5q35.3
    CLK4 177962.271 5q35
    ADAMTS2 178473.456 5q23-q24
    CANX 179058.536 5q35
    MAML1 179092.457 5q35
    LTC4S 179153.592 5q35
    MGAT4B 179156.711 5q35
    SQSTM1 179180.448 5q35
    RNF130 179315.080 5q35.3
    RASGEF1C 179460.401 5q35.3
    SCGB3A1 179949.711 5q35-qter
    FLT4 179967.359 5q35.3

    GeneCards   GDB - List of genes

    This page should be referenced as such :
    Dessen P, Knuutila S, Huret JL Chromosome 5. Atlas Genet Cytogenet Oncol Haematol. 2002.
    URL : http://AtlasGeneticsOncology.org/Indexbychrom/idxa_5.html
    © Atlas of Genetics and Cytogenetics in Oncology and Haematology
    indexed on : Sat Oct 11 14:18:26 2008
    Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case reports   Journals   Portal   Teaching   

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