Atlas of Genetics and Cytogenetics in Oncology and Haematology


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News


2017-05-07

  • Nomination of several Section Editors (see Editorial Board).
  • Update of presentation of Leukemia (with Lymphoma and Myeloid malignancies sections).
  • Update of presentation of Solid Tumors (with several sections).
  • Data for human genome is now referenced to GCRCh38 build) for chromosomal coordonates, chromosomal and cytogenetic band pages.

    2016-11-15

  • A new table for ICD Classification.
    This table gives access to International Classification of Diseases [ ICD-O-3 ] and the neoplasm part of ICD10.
    The first part gives access at the topographical classification with links to Atlas tumors and secondly to the morphological codes.
  • The searchbox on the Home page has been updated with a full indexation of fields NAME, ALIAS, GENE SYMBOL .. with a simple or an advanced form.
    For a complementary search in full text, the Google indexation of Atlas can also be queried.

    2016-06-10

  • A new table for a new integrated portal at NCI : Genomic Data Commons DataPortal.
    The GDC Portal offers simple access to data from TCGA and TARGET programs.
    A great part of data have been reanalysed with new pipeline and annotations. see the Release Note.

    2016-02-10

  • How to link the data in the Atlas :
  • New table for the different projects on the IntoGen Portal (Barcelona)
    IntOGen collects and analyses somatic mutations in thousands of tumor genomes to identify cancer driver genes (list of 459 mutational cancer driver genes. )
  • New table for the different projects on the OASIS Portal (developped by Pfizer).
    OASIS portal presents a set of cancer data (TCGA nd some other) with somatic mutations, copy number ....). with the possibility of retrieving the data.

    2016-01-30

  • On Atlas : Update of the Entities by Chromosomal bands (Chromosomal abnormalities, Gene locations and Gene fusions)
  • Update of the list of TCGA programs with new links to the Broad Firehose portal and list of ICGC programs.

    2015-07-24

  • Update of interfaces for chromosome abnormalities with structural variations of COSMIC.
  • Update of Atlas Status with list of Atlas' authors

    2015-06-11

  • New interfaces for chromosome abnormalities and genes (and gene fusions) classified by chromosomal bands ex : 1p36.
    This development is an attempt to integrate major informations about chromosome abnormalities and fusion genes from different sources. The result is probably not exhaustive and may have some errors. Please send your remarks.
    These 440 pages (one for each band) are split in 2 parts : Abnormalities and Genes
    All these informations are from the following sources :


    2015-06-02

  • Nosology, Thesaurus and Census of Solid Tumors Several new Tables for Solid Tumors describe a Classification of Tumors in Atlas in relation with the International Classification of Disease s (ICD-O3) with references to nosology and phylums/phyla and sub tables for 11 sub classifications (access from the page Solid Tumors


    2015-05-28

    Atlas Status These pages describe the status of objects/items (Genes, Leukemia, Tumors and Cancer-prones) with their status (date of creation and /or update of expertise), some information as chromosomal locations, ICD classification ..) These tables (updated regularly at each indexation) may decide an author to submit a new paper. See : How to contribute


    2015-05-28

  • Tumor Cell lines This page was updated with reference to the paper in Nature on a comprehensive transcriptional portrait of human cancer cell line, by GenenTech. Klijn C et al. A comprehensive transcriptional portrait of human cancer cell lines.Nat Biotechnol. 2015 Mar;33(3): 306-12. PMID: [PubMed]


    2014-12-03

  • The list of genes maintained in the Atlas is now extended to all genes (symbol) present in Entrez Gene which have a location on the human genome (build hg19) on the UCSC database. The list consist on an expertised list (> 1,400) and a raw list (> 26,000) which contains either a part which is implicated in cancer and an other part with no know implication in cancer (In Atlas the difference is based on the presence of a list of "cancer" terms present in different files (description, geneRIF ..).


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