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Sites and databases related to genetics, cytogenetics and oncology



General Links

Bibliography in Biological Sciences

General Resources        Thematic list
  • SRS 8.0
    SRS is a proven and scalable data integration platform that is used at over 300 commercial and academic sites delivering genomic data to thousands of users.  New version of SRS 8.0 is released with Web Services for seamless integration - Lion bioscience (Heidelberg de)
  • GENOSCOPE
    The French National Sequencing Center - A large scale sequencing center (Evry fr)
  • CEPH
    Centre du Polymorphisme Humain - A research laboratory created in 1984 by Professor Jean Dausset (Paris fr)
  • Genethon
    Centre de Recherche sur le Génome humain et d’applications sur les thérapies géniques (Evry fr)
  • NCBI-NIH
    National Center for Biotechnology Information - (Bethesda MD us)
  • ExPASy
    Expert Protein Analysis System  - proteomics server of the Swiss Institute of Bioinformatics - SIB(Geneva ch)
  • HGMP-MRC -UK
    Human Genome Mapping Project Resource Centre (Cambridge uk)
  • HUGO
    Human Genome Organisation - the international organisation of scientists involved in the Human Genome Project (London uk)
  • RZPD
    Deutsches Ressourcenzentrum für Genomforschung - A non-for-profit service center for genomics and proteomics research (Berlin - Heidelberg de)
  • LSG
    Laboratory Statistical Genetics at Rockefeller University  - Web Resources of genetic linkage analysis (New York NY us)
  • HUM-MOLGEN
    Human Molecular Genetics - An international communication forum in human genetics (Berlin de)
  • IUAC-UICC
    International Union Against Cancer  - An international non-governmental organisation to the global control of cancer (Geneva ch)
  • IARC
    International Agency for Research on Cancer (Lyon fr)
  • WHO
    World Health Organisation - International Organization for Health (Geneva ch)     World Health Organisation - Programmes on Cancer and related sites or links on this topic (Geneva ch)
  • NATURE - Cancer Websites
    Cancer Websites by Nature - Reviews
  • Atlas Links in Genetics, Cytogenetics and Cancer (this URL ...)
    Atlas of Genetics and Cytogenetics in Oncology and Haematology -Sites and databases related to genetics, cytogenetics and oncology
    General Databases

    Genetic and Genomic Resources

    Nucleic Acid Sequence Databases Protein Sequence Databases

    Mutation Resources and Diseases

    Polymorphisms


    Genetic/Cytogenetic and Cancer Resources

    Human Cytogenetics

    Comparative Cytogenetics Cancer Genetics
    Maps by Chromosome

    Functional Genomics - Transcriptome

    Technology and Analysis

    Gene Expression Data Analysis Tools
  • Gene Expression Databases SAGE
    • SAGE data for several tissues
      Serial analysis of gene expression (SAGE) is a method for comprehensive analysis of gene expression patterns - Johns Hopkins Oncology Center - Molecular Genetics Laboratory (Baltimore MD us)
    • SAGE Map - NCBI
      Tag to Gene Mapping - In order to support the public use and dissemination of serial analysis of gene expression (SAGE) data, NCBI has recently refurbished this website. SAGEmap is a SAGE data resource for the query and retrieval and analysis of SAGE data from any organism (Bethesda MD us)
    RNA Antisenses miRNA and siRNA
    • The siRNA user guide (revised May 8, 2003)
      Selection of siRNA duplexes from the target mRNA sequence - Tuschl Lab Rockefeller University (New York NY us)
    • siRNA - EMBOSS - Pasteur
      Gary Williams MRC Rosalind Franklin Centre for Genomics Research (Cambridge uk) - Institut Pasteur (Paris fr)
    • siSearch - An siRNA design Program
      siSearch is designed to select siRNAs based on approaches derived from data mining of our siRNA database - Center for Genomics and Bioinformatics Karolinska Institutet (Stockholm se)
    • Sfold
      Software for Statistical Folding and Rational Design of Nucleic Acids - Bioinformatic Center Rensselear Polytechnic Institute (Troy NY us)
    • siRNA at Whitehead
      Bioinformatic & Research Computing - Whitehead Institute (Cambridge MA us)
    • Orbigen
      Orbigen develops, manufactures and markets reagent tools for proteomic research - Orbiben Inc (San Diego CA us)
    • Links for siRNA and hairpin tools
      by Dr Michael Mc Manus - MIT Center for Cancer Research (New York NY us)
    • RFAM - Sanger
      RNA families database of alignments and CMs - Sanger Institute (Cambridge uk)
    • miRNA - Sanger
      miRBase: the home of microRNA data - Sanger Institute (Cambridge uk)
    • Pictar
      PicTar is an algorithm for the identification of microRNA targets.
    • Human microRNA targets


    Functional Genomics - Metabolism

    • KEGG: Kyoto Encyclopedia of Genes and Genomes
      A complete computer representation of the cell and the organism, which will enable computational prediction of higher-level complexity of cellular processes and organism behaviors from genomic information (Kyoto jp)
      Chemical Database for Enzyme Reactions The relational database Pareo contains metabolic data from KEGG - by V. Loux MIG Mathematic Informatic Genome Inra (Jouy fr)
    • PUMA2
      Evolutionary Analysis of Metabolism - Bioinformatics Group, Mathematics & Computer Science Division (Argonne IL us)
    • MBB
      The University of Minnesota Biocatalysis/Biodegradation Database (Minneapolis, MN us)
    • WIT2
      WIT2 is superceded by two systems :
      - The SEED: an Annotation/Analysis Tool Provided by FIG
      - PUMA2
    • EMP Project
      Enzymes and Metabolic Pathways database, EMP, is a unique and most comprehensive electronic source of biochemical data.
    • Biochemical Pathways - Roche
      This page gives access to the digitized version of the Roche Applied Science "Biochemical Pathways" wall chart (Basel
      ch)
    • Double Twist Pathways
      The Pathway/Genome Navigator provides WWW access to Pathway/Genome databases - CMGM Standford University (Stanford CA us)
    • CGAP Pathways
      Pathways on the CGAP web site have been obtained directly from BioCarta and KEGG (Kyoto Encyclopedia of Genes and Genomes) by NIH
    • Biocarta Pathways
      Pathway information provided by BioCarta by NIH
    • GenMAPP
      GenMAPP is a free computer application designed to visualize gene expression and other genomic data on maps representing biological pathways and groupings of genes - GenMAPP.org is based out of the Conklin lab at the Gladstone Institutes and the University of California (San Francisco CA us)
    • CSNDB Cell Signaling networks database
    • PharmGKB
      The Pharmacogenetics and Phamacogenomics Knowledge Base : an integrated resource about how variation in human genes leads to variation in our response to drugs - Standford University (Stanford CA us)
    • SPAD Signaling Pathway Database
      An integrated database for genetic information and signal transduction systems - Kyushu University (Fukuoka jp)
    • GeNet IHPCDB
      Gene Networks Database - Institute for High performance Computing and Databases (St.Petersburg ru)
    • GO
      The goal of the Gene OntologyTM (GO) Consortium is to produce a controlled vocabulary that can be applied to all organisms even as knowledge of gene and protein roles in cells is accumulating and changing.
    • AmiGO
      AmiGO is an HTML based application which allows the user to browse, query and visualize data from the Gene Ontology, or any ontology in OBO format.
    • OBO
      Open Biological Ontologies is an umbrella web address for well-structured controlled vocabularies for shared use across different biological domains
    • Bio Mirror - GO softwares
      Open Source, Free Tools and Closed Source, with License Fee
    • EASE - the Expression Analysis Systematic Explorer
      EASE is a customizable, standalone software application that facilitates the biological interpretation of gene lists derived from the results of microarray, proteomic, and SAGE experiments.
    • Reactome - a knowledgebase of biological processes
      Reactome is a curated database of biological processes in humans. It covers biological pathways ranging from the basic processes of metabolism to high-level processes such as hormonal signalling (Cold Spring Harbor and EBI)

    Various

    Dictionnaries

    • Wordsmyth : the Educational Dictionary-Thesaurus
      A Distinctive Dictionary. Under Dr. Parks' direction, a group full-time editors and a staff of writers worked for over five years producing an original American English Dictionary (Ithaca, NY us)
    • The ARTFL Project
      The Project for American and French Research on the Treasury of the French Language (ARTFL) is a cooperative enterprise of Analyse et Traitement Informatique de la Langue Franēaise (ATILF) of the Centre National de la Recherche Scientifique (CNRS), the Division of the Humanities, the Division of the Social Sciences, and Electronic Text Services (ETS) of the University of Chicago. (Chicago IL us)
    • Medical Online Dictionaries and Glossaries
    • Grand Dictionnaire Terminologique
      Excellent French/English dictionary, by the "Office québécois de la langue française"

    • Over 1,735 links to useful & informative medical & health-related web sites and medical dictionaries in nineteen languages; compiled by André Fairchild - American Translators Association (Denver CO us)

    Paintings
    Contributor(s)
    Updated 12-2006 Philippe Dessen and Marie-Thérèse Maunoury
    Citation
    This page should be referenced as such :
    Dessen P and Maunoury MT. Sites and databases related to genetics, cytogenetics and oncology. Atlas Genet Cytogenet Oncol Haematol. December 2006 .
    URL : http://atlasgeneticsoncology.org/dblinks.html
    © Atlas of Genetics and Cytogenetics in Oncology and Haematology
    indexed on : Wed Dec 20 12:30:00 MET 2006
    For comments and suggestions, please contact us:  dessen@igr.fr website


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