EFNB2 (ephrin B2)

2003-08-01  

Identity

HGNC
EFNB2
LOCATION
13q33.3
LOCUSID
1948
ALIAS
EPLG5,HTKL,Htk-L,LERK5
FUSION GENES
Show Gene Fusions

Other Information

Locus ID:

NCBI: 1948
MIM: 600527
HGNC: 3227
Ensembl: ENSG00000125266

Variants:

dbSNP: 1948
ClinVar: 1948
TCGA: ENSG00000125266
COSMIC: EFNB2

RNA/Proteins

Gene IDTranscript IDUniprot
ENSG00000125266ENST00000646441P52799

Expression (GTEx)

0
5
10
15
20
25
30
35
40
45
50
Adipose - Subcutaneous
Adipose - Visceral
Adrenal Gland
Artery - Aorta
Artery - Tibial
Bladder
Brain - Amygdala
Brain - Anterior cingulate cortex
Brain - Caudate
Brain - Cerebellar Hemisphere
Brain - Cerebellum
Brain - Cortex
Brain - Frontal Cortex
Brain - Hippocampus
Brain - Hypothalamus
Brain - Nucleus accumbens
Brain - Putamen
Brain - Spinal cord
Brain - Substantia nigra
Breast - Mammary Tissue
Cells - Cultured fibroblasts
Cells - EBV - transformed lymphocytes
Cervix - Ectocervix
Cervix - Endocervix
Colon - Sigmoid
Colon - Transverse
Esophagus - Gastroesophageal Junction
Esophagus - Mucosa
Esophagus - Muscularis
Fallopian Tube
Heart - Atrial Appendage
Heart - Left Ventricle
Kidney - Cortex
Kidney - Medulla
Liver
Lung
Minor Salivary Gland
Muscle - Skeletal
Nerve - Tibial
Ovary
Pancreas
Pituitary
Prostate
Skin - Not Sun Exposed
Skin - Sun Exposed
Small Intestine - Terminal Ileum
Spleen
Stomach
Testis
Thyroid
Uterus
Vagina
Whole Blood

Pathways

PathwaySourceExternal ID
Axon guidanceKEGGko04360
Axon guidanceKEGGhsa04360
Developmental BiologyREACTOMER-HSA-1266738
Axon guidanceREACTOMER-HSA-422475
EPH-Ephrin signalingREACTOMER-HSA-2682334
EPHB-mediated forward signalingREACTOMER-HSA-3928662
Ephrin signalingREACTOMER-HSA-3928664
EPH-ephrin mediated repulsion of cellsREACTOMER-HSA-3928665

Protein levels (Protein atlas)

Not detected
Low
Medium
High
cerebral cortex
cerebellum
hippocampus
caudate
thyroid gland
parathyroid gland
adrenal gland
nasopharynx
bronchus
lung
oral mucosa
salivary gland
esophagus
stomach 1
stomach 2
duodenum
small intestine
colon
rectum
liver
gallbladder
pancreas
kidney
urinary bladder
testis
epididymis
seminal vesicle
prostate
vagina
ovary
fallopian tube
endometrium 1
endometrium 2
cervix, uterine
placenta
breast
heart muscle
smooth muscle
skeletal muscle
soft tissue 1
soft tissue 2
adipose tissue
skin 1
skin 2
appendix
spleen
lymph node
tonsil
bone marrow

References

Pubmed IDYearTitleCitations
160070752005EphrinB2 is the entry receptor for Nipah virus, an emergent deadly paramyxovirus.201
159987302005Ephrin-B2 ligand is a functional receptor for Hendra virus and Nipah virus.176
119831652002EphrinB phosphorylation and reverse signaling: regulation by Src kinases and PTP-BL phosphatase.100
184880392008Structural basis of Nipah and Hendra virus attachment to their cell-surface receptor ephrin-B2.95
185708972008Platelet-derived growth factor signaling through ephrin-b2 regulates hepatic vascular structure and function.51
187137442008Ephrin-B2-induced cleavage of EphB2 receptor is mediated by matrix metalloproteinases to trigger cell repulsion.50
127343952003Forward EphB4 signaling in endothelial cells controls cellular repulsion and segregation from ephrinB2 positive cells.46
198754472010Structural characterization of the EphA4-Ephrin-B2 complex reveals new features enabling Eph-ephrin binding promiscuity.46
168679922006Structural and biophysical characterization of the EphB4*ephrinB2 protein-protein interaction and receptor specificity.42
197283392010The phosphorylation of ephrin-B2 ligand promotes glioma cell migration and invasion.40

Citation

Dessen P

EFNB2 (ephrin B2)

Atlas Genet Cytogenet Oncol Haematol. 2003-08-01

Online version: http://atlasgeneticsoncology.org/gene/40416/efnb2