DDX42 (DEAD-box helicase 42)

2007-04-01  

Identity

HGNC
LOCATION
17q23.3
LOCUSID
ALIAS
DDX42P,RHELP,RNAHP,SF3B8,SF3b125
FUSION GENES

Other Information

Locus ID:

NCBI: 11325
MIM: 613369
HGNC: 18676
Ensembl: ENSG00000198231

Variants:

dbSNP: 11325
ClinVar: 11325
TCGA: ENSG00000198231
COSMIC: DDX42

RNA/Proteins

Gene IDTranscript IDUniprot
ENSG00000198231ENST00000359353Q86XP3
ENSG00000198231ENST00000389924Q86XP3
ENSG00000198231ENST00000457800A0A0A0MSJ0
ENSG00000198231ENST00000577940J3KRE3
ENSG00000198231ENST00000578137J3KTK9
ENSG00000198231ENST00000578681Q86XP3
ENSG00000198231ENST00000581135J3QRI2
ENSG00000198231ENST00000583590Q86XP3
ENSG00000198231ENST00000584261J3KRV0

Expression (GTEx)

0
50
100
150

Pathways

PathwaySourceExternal ID
SpliceosomeKEGGko03040
SpliceosomeKEGGhsa03040
Spliceosome, U2-snRNPKEGGhsa_M00352
Spliceosome, U2-snRNPKEGGM00352
Gene ExpressionREACTOMER-HSA-74160
Processing of Capped Intron-Containing Pre-mRNAREACTOMER-HSA-72203
mRNA SplicingREACTOMER-HSA-72172
mRNA Splicing - Major PathwayREACTOMER-HSA-72163
mRNA Splicing - Minor PathwayREACTOMER-HSA-72165

Protein levels (Protein atlas)

Not detected
Low
Medium
High

References

Pubmed IDYearTitleCitations
122349372002Characterization of novel SF3b and 17S U2 snRNP proteins, including a human Prp5p homologue and an SF3b DEAD-box protein.100
185889272008Interferon antagonist function of Japanese encephalitis virus NS4A and its interaction with DEAD-box RNA helicase DDX42.20
163972942006Ddx42p--a human DEAD box protein with RNA chaperone activities.19

Citation

Dessen P

DDX42 (DEAD-box helicase 42)

Atlas Genet Cytogenet Oncol Haematol. 2007-04-01

Online version: http://atlasgeneticsoncology.org/gene/47044/ddx42