PHF3 (PHD finger protein 3)

2014-06-01  

Identity

HGNC
PHF3
LOCATION
6q12
LOCUSID
23469
ALIAS
-
FUSION GENES
Show Gene Fusions

Other Information

Locus ID:

NCBI: 23469
MIM: 607789
HGNC: 8921
Ensembl: ENSG00000118482

Variants:

dbSNP: 23469
ClinVar: 23469
TCGA: ENSG00000118482
COSMIC: PHF3

RNA/Proteins

Gene IDTranscript IDUniprot
ENSG00000118482ENST00000262043Q92576
ENSG00000118482ENST00000393387Q92576
ENSG00000118482ENST00000481385E9PE34
ENSG00000118482ENST00000494284A0A1B0GX99
ENSG00000118482ENST00000505138H0Y8L0
ENSG00000118482ENST00000506783E7EVH3
ENSG00000118482ENST00000509330D6R9X2
ENSG00000118482ENST00000509876D6REP0
ENSG00000118482ENST00000514822D6RBF0
ENSG00000118482ENST00000515594E7ER40

Expression (GTEx)

0
5
10
15
20
25
30
35
40
45
Adipose - Subcutaneous
Adipose - Visceral
Adrenal Gland
Artery - Aorta
Artery - Tibial
Bladder
Brain - Amygdala
Brain - Anterior cingulate cortex
Brain - Caudate
Brain - Cerebellar Hemisphere
Brain - Cerebellum
Brain - Cortex
Brain - Frontal Cortex
Brain - Hippocampus
Brain - Hypothalamus
Brain - Nucleus accumbens
Brain - Putamen
Brain - Spinal cord
Brain - Substantia nigra
Breast - Mammary Tissue
Cells - Cultured fibroblasts
Cells - EBV - transformed lymphocytes
Cervix - Ectocervix
Cervix - Endocervix
Colon - Sigmoid
Colon - Transverse
Esophagus - Gastroesophageal Junction
Esophagus - Mucosa
Esophagus - Muscularis
Fallopian Tube
Heart - Atrial Appendage
Heart - Left Ventricle
Kidney - Cortex
Kidney - Medulla
Liver
Lung
Minor Salivary Gland
Muscle - Skeletal
Nerve - Tibial
Ovary
Pancreas
Pituitary
Prostate
Skin - Not Sun Exposed
Skin - Sun Exposed
Small Intestine - Terminal Ileum
Spleen
Stomach
Testis
Thyroid
Uterus
Vagina
Whole Blood

Protein levels (Protein atlas)

Not detected
Low
Medium
High
cerebral cortex
cerebellum
hippocampus
caudate
thyroid gland
parathyroid gland
adrenal gland
nasopharynx
bronchus
lung
oral mucosa
salivary gland
esophagus
stomach 1
stomach 2
duodenum
small intestine
colon
rectum
liver
gallbladder
pancreas
kidney
urinary bladder
testis
epididymis
seminal vesicle
prostate
vagina
ovary
fallopian tube
endometrium 1
endometrium 2
cervix, uterine
placenta
breast
heart muscle
smooth muscle
skeletal muscle
soft tissue 1
soft tissue 2
adipose tissue
skin 1
skin 2
appendix
spleen
lymph node
tonsil
bone marrow

References

Pubmed IDYearTitleCitations
346671772021PHF3 regulates neuronal gene expression through the Pol II CTD reader domain SPOC.19
346671772021PHF3 regulates neuronal gene expression through the Pol II CTD reader domain SPOC.19
249613642014Common PTP4A1-PHF3-EYS variants are specific for alcohol dependence.6
249613642014Common PTP4A1-PHF3-EYS variants are specific for alcohol dependence.6
233249502013Association of rare PTP4A1-PHF3-EYS variants with alcohol dependence.7
233249502013Association of rare PTP4A1-PHF3-EYS variants with alcohol dependence.7
220964942011A novel, functional and replicable risk gene region for alcohol dependence identified by genome-wide association study.31
220964942011A novel, functional and replicable risk gene region for alcohol dependence identified by genome-wide association study.31
159063532005Autoantibodies against GLEA2 and PHF3 in glioblastoma: tumor-associated autoantibodies correlated with prolonged survival.34
159063532005Autoantibodies against GLEA2 and PHF3 in glioblastoma: tumor-associated autoantibodies correlated with prolonged survival.34
118568692001PHF3 expression is frequently reduced in glioma.12
118568692001PHF3 expression is frequently reduced in glioma.12

Citation

Dessen P

PHF3 (PHD finger protein 3)

Atlas Genet Cytogenet Oncol Haematol. 2014-06-01

Online version: http://atlasgeneticsoncology.org/gene/53978/gene-fusions/meetings/favicon/favicon-32x32.png