SIGLEC5 (sialic acid binding Ig like lectin 5)

2016-10-01  

Identity

HGNC
SIGLEC5
LOCATION
19q13.41
LOCUSID
8778
ALIAS
CD170,CD33L2,OB-BP2,OBBP2,SIGLEC-5

Other Information

Locus ID:

NCBI: 8778
MIM: 604200
HGNC: 10874
Ensembl: ENSG00000105501

Variants:

dbSNP: 8778
ClinVar: 8778
TCGA: ENSG00000105501
COSMIC: SIGLEC5

RNA/Proteins

Gene IDTranscript IDUniprot
ENSG00000105501ENST00000534261O15389

Expression (GTEx)

0
50
100
150
Adipose - Subcutaneous
Adipose - Visceral
Adrenal Gland
Artery - Aorta
Artery - Tibial
Bladder
Brain - Amygdala
Brain - Anterior cingulate cortex
Brain - Caudate
Brain - Cerebellar Hemisphere
Brain - Cerebellum
Brain - Cortex
Brain - Frontal Cortex
Brain - Hippocampus
Brain - Hypothalamus
Brain - Nucleus accumbens
Brain - Putamen
Brain - Spinal cord
Brain - Substantia nigra
Breast - Mammary Tissue
Cells - Cultured fibroblasts
Cells - EBV - transformed lymphocytes
Cervix - Ectocervix
Cervix - Endocervix
Colon - Sigmoid
Colon - Transverse
Esophagus - Gastroesophageal Junction
Esophagus - Mucosa
Esophagus - Muscularis
Fallopian Tube
Heart - Atrial Appendage
Heart - Left Ventricle
Kidney - Cortex
Kidney - Medulla
Liver
Lung
Minor Salivary Gland
Muscle - Skeletal
Nerve - Tibial
Ovary
Pancreas
Pituitary
Prostate
Skin - Not Sun Exposed
Skin - Sun Exposed
Small Intestine - Terminal Ileum
Spleen
Stomach
Testis
Thyroid
Uterus
Vagina
Whole Blood

Pathways

PathwaySourceExternal ID
Immune SystemREACTOMER-HSA-168256
Adaptive Immune SystemREACTOMER-HSA-1280218
Immunoregulatory interactions between a Lymphoid and a non-Lymphoid cellREACTOMER-HSA-198933
Innate Immune SystemREACTOMER-HSA-168249
Neutrophil degranulationREACTOMER-HSA-6798695

Protein levels (Protein atlas)

Not detected
Low
Medium
High
cerebral cortex
cerebellum
hippocampus
caudate
thyroid gland
parathyroid gland
adrenal gland
nasopharynx
bronchus
lung
oral mucosa
salivary gland
esophagus
stomach 1
stomach 2
duodenum
small intestine
colon
rectum
liver
gallbladder
pancreas
kidney
urinary bladder
testis
epididymis
seminal vesicle
prostate
vagina
ovary
fallopian tube
endometrium 1
endometrium 2
cervix, uterine
placenta
breast
heart muscle
smooth muscle
skeletal muscle
soft tissue 1
soft tissue 2
adipose tissue
skin 1
skin 2
appendix
spleen
lymph node
tonsil
bone marrow

References

Pubmed IDYearTitleCitations
361290332023Case-only design identifies interactions of genetic risk variants at SIGLEC5 and PLG with the lncRNA CTD-2353F22.1 implying the importance of periodontal wound healing for disease aetiology.3
378546052023PSGL-1: a novel immune checkpoint driving T-cell dysfunction in obstructive sleep apnea.0
378903682023The prognostic impact of SIGLEC5-induced impairment of CD8(+) T cell activation in sepsis.3
361290332023Case-only design identifies interactions of genetic risk variants at SIGLEC5 and PLG with the lncRNA CTD-2353F22.1 implying the importance of periodontal wound healing for disease aetiology.3
378546052023PSGL-1: a novel immune checkpoint driving T-cell dysfunction in obstructive sleep apnea.0
378903682023The prognostic impact of SIGLEC5-induced impairment of CD8(+) T cell activation in sepsis.3
348526502022Periodontitis Risk Variants at SIGLEC5 Impair ERG and MAFB Binding.4
352906632022Siglec-5 is an inhibitory immune checkpoint molecule for human T cells.12
361163912022Siglec-5 and Siglec-14 mediate the endocytosis of ADAMTS13.0
348526502022Periodontitis Risk Variants at SIGLEC5 Impair ERG and MAFB Binding.4
352906632022Siglec-5 is an inhibitory immune checkpoint molecule for human T cells.12
361163912022Siglec-5 and Siglec-14 mediate the endocytosis of ADAMTS13.0
307657892019Genetic susceptibility of common polymorphisms in NIN and SIGLEC5 to chronic periodontitis.8
309227272019Soluble siglec-5 is a novel salivary biomarker for primary Sjogren's syndrome.10
307657892019Genetic susceptibility of common polymorphisms in NIN and SIGLEC5 to chronic periodontitis.8

Citation

Dessen P

SIGLEC5 (sialic acid binding Ig like lectin 5)

Atlas Genet Cytogenet Oncol Haematol. 2016-10-01

Online version: http://atlasgeneticsoncology.org/gene/56013/deep-insight-explorer/case-report-explorer/js/lib/popper.js