LRIF1 (ligand dependent nuclear receptor interacting factor 1)

2014-11-01  

Identity

HGNC
LRIF1
LOCATION
1p13.3
LOCUSID
55791
ALIAS
C1orf103,HBiX1,RIF1
FUSION GENES
Show Gene Fusions

Other Information

Locus ID:

NCBI: 55791
MIM: 615354
HGNC: 30299
Ensembl: ENSG00000121931

Variants:

dbSNP: 55791
ClinVar: 55791
TCGA: ENSG00000121931
COSMIC: LRIF1

RNA/Proteins

Gene IDTranscript IDUniprot
ENSG00000121931ENST00000369763Q5T3J3
ENSG00000121931ENST00000485275Q5T3J3
ENSG00000121931ENST00000494675Q5T3J3

Expression (GTEx)

0
5
10
15
20
25
30
35
40
45
Adipose - Subcutaneous
Adipose - Visceral
Adrenal Gland
Artery - Aorta
Artery - Tibial
Bladder
Brain - Amygdala
Brain - Anterior cingulate cortex
Brain - Caudate
Brain - Cerebellar Hemisphere
Brain - Cerebellum
Brain - Cortex
Brain - Frontal Cortex
Brain - Hippocampus
Brain - Hypothalamus
Brain - Nucleus accumbens
Brain - Putamen
Brain - Spinal cord
Brain - Substantia nigra
Breast - Mammary Tissue
Cells - Cultured fibroblasts
Cells - EBV - transformed lymphocytes
Cervix - Ectocervix
Cervix - Endocervix
Colon - Sigmoid
Colon - Transverse
Esophagus - Gastroesophageal Junction
Esophagus - Mucosa
Esophagus - Muscularis
Fallopian Tube
Heart - Atrial Appendage
Heart - Left Ventricle
Kidney - Cortex
Kidney - Medulla
Liver
Lung
Minor Salivary Gland
Muscle - Skeletal
Nerve - Tibial
Ovary
Pancreas
Pituitary
Prostate
Skin - Not Sun Exposed
Skin - Sun Exposed
Small Intestine - Terminal Ileum
Spleen
Stomach
Testis
Thyroid
Uterus
Vagina
Whole Blood

Protein levels (Protein atlas)

Not detected
Low
Medium
High
cerebral cortex
cerebellum
hippocampus
caudate
thyroid gland
parathyroid gland
adrenal gland
nasopharynx
bronchus
lung
oral mucosa
salivary gland
esophagus
stomach 1
stomach 2
duodenum
small intestine
colon
rectum
liver
gallbladder
pancreas
kidney
urinary bladder
testis
epididymis
seminal vesicle
prostate
vagina
ovary
fallopian tube
endometrium 1
endometrium 2
cervix, uterine
placenta
breast
heart muscle
smooth muscle
skeletal muscle
soft tissue 1
soft tissue 2
adipose tissue
skin 1
skin 2
appendix
spleen
lymph node
tonsil
bone marrow

References

Pubmed IDYearTitleCitations
373808872023SMCHD1 and LRIF1 converge at the FSHD-associated D4Z4 repeat and LRIF1 promoter yet display different modes of action.0
373808872023SMCHD1 and LRIF1 converge at the FSHD-associated D4Z4 repeat and LRIF1 promoter yet display different modes of action.0
300164532018LRIF1 interacts with HP1α to coordinate accurate chromosome segregation during mitosis.15
300164532018LRIF1 interacts with HP1α to coordinate accurate chromosome segregation during mitosis.15
235421552013Human inactive X chromosome is compacted through a PRC2-independent SMCHD1-HBiX1 pathway.96
235421552013Human inactive X chromosome is compacted through a PRC2-independent SMCHD1-HBiX1 pathway.96
174552112007RIF-1, a novel nuclear receptor corepressor that associates with the nuclear matrix.14
174552112007RIF-1, a novel nuclear receptor corepressor that associates with the nuclear matrix.14

Citation

Dessen P

LRIF1 (ligand dependent nuclear receptor interacting factor 1)

Atlas Genet Cytogenet Oncol Haematol. 2014-11-01

Online version: http://atlasgeneticsoncology.org/gene/68582/js/template.js