Atlas of Genetics and Cytogenetics in Oncology and Haematology


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The Cancer Genome Atlas (TCGA)

Genomic Data Commons Home  -  TCGA Publications  -  cBioPortal  -  TCGA Fusion gene Data Portal  -  Firebrowse Broad GDAC

cBioPortalSigleProgramoriginPublicationBroad GDAC
paac_jhu_2014PAAC Acinar Cell Carcinoma of the Pancreas Acinar Cell Carcinoma of the Pancreas (Johns Hopkins, J Pathol 2014) Jial et al, J Pathol 2014  
laml_tcga_pubLAML Acute Myeloid Leukemia Acute Myeloid Leukemia (TCGA, NEJM 2013) TCGA, NEJM 2013 LAML [cohort] [report]
laml_tcgaLAML Acute Myeloid Leukemia Acute Myeloid Leukemia (TCGA, Provisional) LAML [cohort] [report]
acyc_mskccACYC Adenoid Cystic Carcinoma Adenoid Cystic Carcinoma (MSKCC, Nat Genet 2013) Ho et al., Nature Genetics 2013  
acc_tcgaACC Adrenocortical Carcinoma Adrenocortical Carcinoma (TCGA, Provisional) ACC [cohort] [report]
blca_mskcc_solit_2014BLCA Bladder Cancer Bladder Cancer (MSKCC, Eur Urol 2014) BLCA [cohort] [report]
blca_mskcc_solit_2012BLCA Bladder Cancer Bladder Cancer (MSKCC, J Clin Oncol 2013) BLCA [cohort] [report]
blca_bgiBLCA Bladder Urothelial Carcinoma Bladder Urothelial Carcinoma (BGI, Nat Genet 2013) BLCA [cohort] [report]
blca_dfarber_mskcc_2014BLCA Bladder Urothelial Carcinoma Bladder Urothelial Carcinoma (Dana Farber & MSKCC, Cancer Discovery 2014) Van Allen et al.,Cancer Discovery 2014 BLCA [cohort] [report]
blca_tcga_pubBLCA Bladder Urothelial Carcinoma Bladder Urothelial Carcinoma (TCGA, Nature 2014) BLCA [cohort] [report]
blca_tcgaBLCA Bladder Urothelial Carcinoma Bladder Urothelial Carcinoma (TCGA, Provisional) BLCA [cohort] [report]
lgg_tcgaLGG Brain Lower Grade Glioma Brain Lower Grade Glioma (TCGA, Provisional) LGG [cohort] [report]
brca_bccrcBRCA Breast Invasive Carcinoma Breast Invasive Carcinoma (British Columbia, Nature 2012) BRCA [cohort] [report]
brca_broadBRCA Breast Invasive Carcinoma Breast Invasive Carcinoma (Broad, Nature 2012) Banerji et al. Nature 2012. BRCA [cohort] [report]
brca_sangerBRCA Breast Invasive Carcinoma Breast Invasive Carcinoma (Sanger, Nature 2012) Stephens et al. Nature 2012. BRCA [cohort] [report]
brca_tcga_pub2015BRCA Breast Invasive Carcinoma Breast Invasive Carcinoma (TCGA, Cell 2015) TCGA, Cell 2015. BRCA [cohort] [report]
brca_tcga_pubBRCA Breast Invasive Carcinoma Breast Invasive Carcinoma (TCGA, Nature 2012) TCGA, Nature 2012 BRCA [cohort] [report]
brca_tcgaBRCA Breast Invasive Carcinoma Breast Invasive Carcinoma (TCGA, Provisional) BRCA [cohort] [report]
brca_bccrc_xenograft_2014BRCA Breast cancer patient xenografts Breast cancer patient xenografts (British Columbia, Nature 2014) Eirew et al. Nature 2014. BRCA [cohort] [report]
cellline_ccle_broadCELLLINE Cancer Cell Line Encyclopedia Cancer Cell Line Encyclopedia (Novartis/Broad, Nature 2012) Barretina et al. Nature 2012.  
cesc_tcgaCESC Cervical Squamous Cell Carcinoma and Endocervical Adenocarcinoma Cervical Squamous Cell Carcinoma and Endocervical Adenocarcinoma (TCGA, Provisional) CESC [cohort] [report]
chol_nccs_2013CHOL Cholangiocarcinoma Cholangiocarcinoma (National Cancer Centre of Singapore, Nat Genet 2013) Chan-on et al. Nature Genetics 2013 CHOL [cohort] [report]
chol_nus_2012CHOL Cholangiocarcinoma Cholangiocarcinoma (National University of Singapore, Nat Genet 2012) Ong et al. Nature Genetics 2012 CHOL [cohort] [report]
chol_tcgaCHOL Cholangiocarcinoma Cholangiocarcinoma (TCGA, Provisional) CHOL [cohort] [report]
ccrcc_utokyo_2013CCRCC Clear Cell Renal Cell Carcinoma Clear Cell Renal Cell Carcinoma (U Tokyo, Nat Genet 2013) Sato et al. Nat Genet 2013  
coadread_genentechCOADREAD Colorectal Adenocarcinoma Colorectal Adenocarcinoma (Genentech, Nature 2012) Seshagiri et al. Nature 2012. COADREAD [cohort] [report]
coadread_tcga_pubCOADREAD Colorectal Adenocarcinoma Colorectal Adenocarcinoma (TCGA, Nature 2012) TCGA, Nature 2012 COADREAD [cohort] [report]
coadread_tcgaCOADREAD Colorectal Adenocarcinoma Colorectal Adenocarcinoma (TCGA, Provisional) COADREAD [cohort] [report]
coadread_mskccCOADREAD Colorectal Adenocarcinoma Triplets Colorectal Adenocarcinoma Triplets (MSKCC, Genome Biology 2014) Brannon et al. Genome Biology 2014 COADREAD [cohort] [report]
cscc_dfarber_2015CSCC Cutaneous squamous cell carcinoma Cutaneous squamous cell carcinoma (DFCI, Clin Cancer Res 2015) Li et al, Clin Cancer Res 2015  
desm_broad_2015DESM Desmoplastic Melanoma Desmoplastic Melanoma (Broad Institute, Nat Genet 2015) Shain et al, Nat Genet 2015  
esca_broadESCA Esophageal Adenocarcinoma Esophageal Adenocarcinoma (Broad, Nat Genet 2013) Dulak et al. Nat Genet 2013. ESCA [cohort] [report]
esca_tcgaESCA Esophageal Carcinoma Esophageal Carcinoma (TCGA, Provisional) ESCA [cohort] [report]
escc_icgcESCC Esophageal Squamous Cell Carcinoma Esophageal Squamous Cell Carcinoma (ICGC, Nature 2014) Song et al. Nature 2014  
escc_ucla_2014ESCC Esophageal Squamous Cell Carcinoma Esophageal Squamous Cell Carcinoma (UCLA, Nat Genet 2014) Lin et al., Nat Genet 2014.  
es_iocurie_2014ES Ewing Sarcoma Ewing Sarcoma (Institut Cuire, Cancer Discov 2014) Tirode et al. Cancer Discov. 2014  
gbc_shanghai_2014GBC Gallbladder Carcinoma Gallbladder Carcinoma (Shanghai, Nat Genet 2014) Maolan Li et al, Nat Genet 2014  
egc_tmucih_2015EGC Gastric Adenocarcinoma Gastric Adenocarcinoma (TMUCIH, PNAS 2015) Chen et al. PNAS 2015  
gbm_tcga_pub2013GBM Glioblastoma Glioblastoma (TCGA, Cell 2013) TCGA, Cell 2013 GBM [cohort] [report]
gbm_tcga_pubGBM Glioblastoma Glioblastoma (TCGA, Nature 2008) TCGA, Nature 2008 GBM [cohort] [report]
gbm_tcgaGBM Glioblastoma Multiforme Glioblastoma Multiforme (TCGA, Provisional) GBM [cohort] [report]
hnsc_broadHNSC Head and Neck Squamous Cell Carcinoma Head and Neck Squamous Cell Carcinoma (Broad, Science 2011) Stransky et al. Science 2011. HNSC [cohort] [report]
hnsc_jhuHNSC Head and Neck Squamous Cell Carcinoma Head and Neck Squamous Cell Carcinoma (Johns Hopkins, Science 2011) Agrawal et al. Science 2011. HNSC [cohort] [report]
hnsc_tcga_pubHNSC Head and Neck Squamous Cell Carcinoma Head and Neck Squamous Cell Carcinoma (TCGA, Nature 2015) TCGA, Nature 2015 HNSC [cohort] [report]
hnsc_tcgaHNSC Head and Neck Squamous Cell Carcinoma Head and Neck Squamous Cell Carcinoma (TCGA, Provisional) HNSC [cohort] [report]
all_stjude_2015ALL Infant MLL-Rearranged Acute Lymphoblastic Leukemia Infant MLL-Rearranged Acute Lymphoblastic Leukemia (St Jude, Nat Genet 2015) Andersson et al. Nat Genet 2015  
chol_jhu_2013CHOL Intrahepatic Cholangiocarcinoma Intrahepatic Cholangiocarcinoma (Johns Hopkins University, Nat Genet 2013) Jiao et al. Nature Genetics 2013 CHOL [cohort] [report]
kich_tcga_pubKICH Kidney Chromophobe Kidney Chromophobe (TCGA, Cancer Cell 2014) TCGA, Cancer Cell 2014. KICH [cohort] [report]
kich_tcgaKICH Kidney Chromophobe Kidney Chromophobe (TCGA, Provisional) KICH [cohort] [report]
kirc_bgiKIRC Kidney Renal Clear Cell Carcinoma Kidney Renal Clear Cell Carcinoma (BGI, Nat Genet 2012) Guo et al. Nat Genet 2012. KIRC [cohort] [report]
kirc_tcga_pubKIRC Kidney Renal Clear Cell Carcinoma Kidney Renal Clear Cell Carcinoma (TCGA, Nature 2013) TCGA, Nature 2013. KIRC [cohort] [report]
kirc_tcgaKIRC Kidney Renal Clear Cell Carcinoma Kidney Renal Clear Cell Carcinoma (TCGA, Provisional) KIRC [cohort] [report]
kirp_tcgaKIRP Kidney Renal Papillary Cell Carcinoma Kidney Renal Papillary Cell Carcinoma (TCGA, Provisional) KIRP [cohort] [report]
lihc_amc_prvLIHC Liver Hepatocellular Carcinoma Liver Hepatocellular Carcinoma (AMC, Hepatology 2014) Ahn et al. Hepatology 2014 LIHC [cohort] [report]
lihc_rikenLIHC Liver Hepatocellular Carcinoma Liver Hepatocellular Carcinoma (RIKEN, Nat Genet 2012) Fujimoto et al. Nature Genetics 2012. LIHC [cohort] [report]
lihc_tcgaLIHC Liver Hepatocellular Carcinoma Liver Hepatocellular Carcinoma (TCGA, Provisional) LIHC [cohort] [report]
lgg_ucsf_2014LGG Low-Grade Gliomas Low-Grade Gliomas (UCSF, Science 2014) Johnson BE et al, Science 2014 LGG [cohort] [report]
luad_broadLUAD Lung Adenocarcinoma Lung Adenocarcinoma (Broad, Cell 2012) Imielinksi et al. Cell 2012. LUAD [cohort] [report]
luad_mskcc_2015LUAD Lung Adenocarcinoma Lung Adenocarcinoma (MSKCC 2015) LUAD [cohort] [report]
luad_tcga_pubLUAD Lung Adenocarcinoma Lung Adenocarcinoma (TCGA, Nature 2014) TCGA, Nature 2014. LUAD [cohort] [report]
luad_tcgaLUAD Lung Adenocarcinoma Lung Adenocarcinoma (TCGA, Provisional) LUAD [cohort] [report]
luad_tspLUAD Lung Adenocarcinoma Lung Adenocarcinoma (TSP, Nature 2008) Ding et al. Nature 2008. LUAD [cohort] [report]
lusc_tcga_pubLUSC Lung Squamous Cell Carcinoma Lung Squamous Cell Carcinoma (TCGA, Nature 2012) TCGA, Nature 2012 LUSC [cohort] [report]
lusc_tcgaLUSC Lung Squamous Cell Carcinoma Lung Squamous Cell Carcinoma (TCGA, Provisional) LUSC [cohort] [report]
dlbc_tcgaDLBC Lymphoid Neoplasm Diffuse Large B-cell Lymphoma Lymphoid Neoplasm Diffuse Large B-cell Lymphoma (TCGA, Provisional) DLBC [cohort] [report]
mpnst_mskccMPNST Malignant Peripheral Nerve Sheath Tumor Malignant Peripheral Nerve Sheath Tumor (MSKCC, Nat Genet 2014) Lee et al. Nature Genetics 2014  
mbl_broad_2012MBL Medulloblastoma Medulloblastoma (Broad, Nature 2012) Pugh et al. Nature 2012.  
mbl_icgcMBL Medulloblastoma Medulloblastoma (ICGC, Nature 2012) Jones et al. Nature 2012.  
mbl_pcgpMBL Medulloblastoma Medulloblastoma (PCGP, Nature 2012) Robinson et al. Nature 2012.  
skcm_broad_dfarberSKCM Melanoma Melanoma (Broad/Dana Farber, Nature 2012) Berger et al. Nature 2012 SKCM [cohort] [report]
lgggbm_tcga_pubLGGGBM Merged Cohort of LGG and GBM Merged Cohort of LGG and GBM (TCGA, 2016)  
meso_tcgaMESO Mesothelioma Mesothelioma (TCGA, Provisional) MESO [cohort] [report]
prad_su2c_2015PRAD Metastatic Prostate Cancer, SU2C/PCF Dream Team Metastatic Prostate Cancer, SU2C/PCF Dream Team (Robinson et al., Cell 2015) Robinson et al. Cell. 2015 PRAD [cohort] [report]
mm_broadMM Multiple Myeloma Multiple Myeloma (Broad, Cancer Cell 2014) Lohr et al. Cancer Cell 2014.  
ccrcc_irc_2014CCRCC Multiregion Sequencing of Clear Cell Renal Cell Carcinoma Multiregion Sequencing of Clear Cell Renal Cell Carcinoma (IRC, Nat Genet 2014) Gerlinger et al. Nat Genet 2014  
cellline_nci60CELLLINE NCI-60 Cell Lines NCI-60 Cell Lines (NCI, Cancer Res. 2012) Reinhold et al., Cancer Res. 2012  
npc_nusingaporeNPC Nasopharyngeal Carcinoma Nasopharyngeal Carcinoma (Singapore, Nat Genet 2014) Lin et al., Nature Genetics 2014.  
nbl_amc_2012NBL Neuroblastoma Neuroblastoma (AMC Amsterdam, Nature 2012) Molenaar et al. Nature 2012.  
nepc_wcmNEPC Neuroendocrine Prostate Cancer Neuroendocrine Prostate Cancer (Trento/Cornell/Broad 2016) Nature Methods, 2016 Feb 8  
ov_tcga_pubOV Ovarian Serous Cystadenocarcinoma Ovarian Serous Cystadenocarcinoma (TCGA, Nature 2011) TCGA, Nature 2011 OV [cohort] [report]
ov_tcgaOV Ovarian Serous Cystadenocarcinoma Ovarian Serous Cystadenocarcinoma (TCGA, Provisional) OV [cohort] [report]
paad_icgcPAAD Pancreatic Adenocarcinoma Pancreatic Adenocarcinoma (ICGC, Nature 2012) Biankin et al. Nature 2012. PAAD [cohort] [report]
paad_tcgaPAAD Pancreatic Adenocarcinoma Pancreatic Adenocarcinoma (TCGA, Provisional) PAAD [cohort] [report]
paad_utsw_2015PAAD Pancreatic Cancer Pancreatic Cancer (UTSW, Nat Commun 2015) Witkiewicz et al. Nat Commun 2015 PAAD [cohort] [report]
panet_jhu_2011PANET Pancreatic Neuroendocrine Tumors Pancreatic Neuroendocrine Tumors (Johns Hopkins University, Science 2011) Jiao et al. Science 2011  
thca_tcga_pubTHCA Papillary Thyroid Carcinoma Papillary Thyroid Carcinoma (TCGA, Cell 2014) TCGA, Cell 2014. THCA [cohort] [report]
es_dfarber_broad_2014ES Pediatric Ewing Sarcoma Pediatric Ewing Sarcoma (DFCI, Cancer Discov 2014) Brian D. Crompton et al. Cancer Discov. 2014  
pcpg_tcgaPCPG Pheochromocytoma and Paraganglioma Pheochromocytoma and Paraganglioma (TCGA, Provisional) PCPG [cohort] [report]
thyroid_mskcc_2016THYROID Poorly-Differentiated and Anaplastic Thyroid Cancers Poorly-Differentiated and Anaplastic Thyroid Cancers (MSKCC, JCI 2016) Landa et al. J Clin Invest 2016  
pcnsl_mayo_2015PCNSL Primary Central Nervous System Lymphoma Primary Central Nervous System Lymphoma (Mayo Clinic, Clin Cancer Res 2015) Braggio E et al, Clin Cancer Res 2015  
prad_broad_2013PRAD Prostate Adenocarcinoma Prostate Adenocarcinoma (Broad/Cornell, Cell 2013) Baca et al. Cell 2013. PRAD [cohort] [report]
prad_broadPRAD Prostate Adenocarcinoma Prostate Adenocarcinoma (Broad/Cornell, Nat Genet 2012) Barbieri et al. Nature Genetics 2012. PRAD [cohort] [report]
prad_mskccPRAD Prostate Adenocarcinoma Prostate Adenocarcinoma (MSKCC, Cancer Cell 2010) Taylor et al. Cancer Cell 2010. PRAD [cohort] [report]
prad_tcga_pubPRAD Prostate Adenocarcinoma Prostate Adenocarcinoma (TCGA, Cell 2015) TCGA, Cell 2015. PRAD [cohort] [report]
prad_tcgaPRAD Prostate Adenocarcinoma Prostate Adenocarcinoma (TCGA, Provisional) PRAD [cohort] [report]
prad_mskcc_2014PRAD Prostate Adenocarcinoma CNA study Prostate Adenocarcinoma CNA study (MSKCC, PNAS 2014) Hieronymus et al. PNAS 2014. PRAD [cohort] [report]
prad_mskcc_cheny1_organoids_2014PRAD Prostate Adenocarcinoma Organoids Prostate Adenocarcinoma Organoids (MSKCC, Cell 2014) Gao et al., Cell 2014 PRAD [cohort] [report]
prad_michPRAD Prostate Adenocarcinoma, Metastatic Prostate Adenocarcinoma, Metastatic (Michigan, Nature 2012) Grasso et al. Nature 2012. PRAD [cohort] [report]
nccrcc_genentech_2014NCCRCC Renal Non-Clear Cell Carcinoma Renal Non-Clear Cell Carcinoma (Genentech, Nat Genet 2014) Durinck et al. Nat Genet 2014  
rms_nih_2014RMS Rhabdomyosarcoma Rhabdomyosarcoma (NIH, Cancer Discov 2014) Shern et al. Cancer Discov 2014  
sarc_mskccSARC Sarcoma Sarcoma (MSKCC/Broad, Nat Genet 2010) Barretina et al. Nature Genetics 2010. SARC [cohort] [report]
sarc_tcgaSARC Sarcoma Sarcoma (TCGA, Provisional) SARC [cohort] [report]
skcm_broadSKCM Skin Cutaneous Melanoma Skin Cutaneous Melanoma (Broad, Cell 2012) Hodis et al. Cell 2012. SKCM [cohort] [report]
skcm_tcgaSKCM Skin Cutaneous Melanoma Skin Cutaneous Melanoma (TCGA, Provisional) SKCM [cohort] [report]
skcm_yaleSKCM Skin Cutaneous Melanoma Skin Cutaneous Melanoma (Yale, Nat Genet 2012) Krauthammer et al. Nat Genet 2012. SKCM [cohort] [report]
scco_mskccSCCO Small Cell Carcinoma of the Ovary Small Cell Carcinoma of the Ovary (MSKCC, Nat Genet 2014) Jelinic et al. Nature Genetics 2014.  
sclc_clcgpSCLC Small Cell Lung Cancer Small Cell Lung Cancer (CLCGP, Nat Genet 2012) Peifer et al. Nat Genet 2012.  
sclc_jhuSCLC Small Cell Lung Cancer Small Cell Lung Cancer (Johns Hopkins, Nat Genet 2012) Rudin et al. Nature Genetics 2012.  
sclc_ucologne_2015SCLC Small Cell Lung Cancer Small Cell Lung Cancer (U Cologne, Nature 2015) George et al. Nature 2015  
stad_pfizer_uhongkongSTAD Stomach Adenocarcinoma Stomach Adenocarcinoma (Pfizer and UHK, Nat Genet 2014) Wang et al. Nature Genetics 2014 STAD [cohort] [report]
stad_tcga_pubSTAD Stomach Adenocarcinoma Stomach Adenocarcinoma (TCGA, Nature 2014) TCGA, Nature 2014. STAD [cohort] [report]
stad_tcgaSTAD Stomach Adenocarcinoma Stomach Adenocarcinoma (TCGA, Provisional) STAD [cohort] [report]
stad_utokyoSTAD Stomach Adenocarcinoma Stomach Adenocarcinoma (U Tokyo, Nat Genet 2014) Kakiuchi et al. Nature Genetics 2014. STAD [cohort] [report]
stad_uhongkongSTAD Stomach Adenocarcinoma Stomach Adenocarcinoma (UHK, Nat Genet 2011) Wang et al. Nature Genetics 2011 STAD [cohort] [report]
tgct_tcgaTGCT Testicular Germ Cell Cancer Testicular Germ Cell Cancer (TCGA, Provisional) TGCT [cohort] [report]
tet_nci_2014TET Thymic Epithelial Tumors Thymic Epithelial Tumors (NCI, Nat Genet 2014) Iacopo Petrini at el. Nat Genet 2014  
thym_tcgaTHYM Thymoma Thymoma (TCGA, Provisional) THYM [cohort] [report]
thca_tcgaTHCA Thyroid Carcinoma Thyroid Carcinoma (TCGA, Provisional) THCA [cohort] [report]
ucs_jhu_2014UCS Uterine Carcinosarcoma Uterine Carcinosarcoma (Johns Hopkins University, Nat Commun 2014) Jones et al. Nat Commun 2014. UCS [cohort] [report]
ucs_tcgaUCS Uterine Carcinosarcoma Uterine Carcinosarcoma (TCGA, Provisional) UCS [cohort] [report]
ucec_tcgaUCEC Uterine Corpus Endometrial Carcinoma Uterine Corpus Endometrial Carcinoma (TCGA, Provisional) UCEC [cohort] [report]
ucec_tcga_pubUCEC Uterine Corpus Endometrioid Carcinoma Uterine Corpus Endometrioid Carcinoma (TCGA, Nature 2013) TCGA, Nature 2013. UCEC [cohort] [report]
uvm_tcgaUVM Uveal Melanoma Uveal Melanoma (TCGA, Provisional) UVM [cohort] [report]
uvm_tcgaUVM Uveal Melanoma Uveal Melanoma (TCGA, Provisional) UVM [cohort] [report]
uvm_tcgaUVM Uveal Melanoma Uveal Melanoma (TCGA, Provisional) UVM [cohort] [report]
uvm_tcgaUVM Uveal Melanoma Uveal Melanoma (TCGA, Provisional) UVM [cohort] [report]


© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : mer. nov. 30 18:08:26 CET 2016

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case reports   Journals   Portal   Teaching   

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