ERCC5 (xeroderma pigmentosum, complementation group G)

2001-05-01   Anne Stary , Alain Sarasin 

Laboratory of Genetic Instability, Cancer, UPR2169 CNRS, Institut de Recherches sur le Cancer, 7, rue guy Moquet, BP 8, 94801 VILLEJUIF, France

Identity

HGNC
LOCATION
13q33.1
IMAGE
Atlas Image
LEGEND
XPG (13q32-33) - Courtesy Mariano Rocchi, Resources for Molecular Cytogenetics.
LOCUSID

DNA/RNA

Description

30 kb; 15 exons (from 61 to 1074 bp) and 14 introns (250 to 5763 bp)

Transcription

  • 15 exons
  • Six spliced XPG mRNA isoforms retaining alternatively spliced exons (I,III), full intron retentions (II, VI), partial intron retention (V) and partial exon skipping (IV)
  • Proteins

    Description

    xeroderma pigmentosum group G complementing factor; DNA-repair protein complementing XPG cells

    Function

    The XPG protein has DNA endonuclease activity without preference for damaged DNA and is responsible for the 3 incision made during Nucleotide Excision Repair (NER). At the site of a lesion NER proteins create a DNA bubble structure over a length of approximately 25 nucleotides and the XPG protein incises the damaged DNA strand 0-2 nucleotides 3 to the ssDNA-dsDNA junction. In most studies the 3-incision made by the XPG protein appeared to be performed prior to and independently of the 5-incision by XPF-ERCC1. The XPG protein is required non-enzymatically for subsequent 5=D5incision by the XPF/ERCC1 heterodimer during the NER process. Patients belonging to the XP-G complementation group clinically exhibit heterogeneous symptoms, from mild to very severe, sometimes associated with CS. XP-G cells are almost completely repair-deficient and as UV-sensitive as XP-A cells. About half of the described XPG patients exhibit also CS symptoms. In that case, the XPG protein is also involved in the transcription-coupled repair of oxidative DNA lesions.

    Homology

    Extensive sequence similarities, in bipartite domain A and B, to products of RAD repair genes of two yeasts, Saccharomyces cerevisae RAD2 and Schizosaccharomyces pombe RAD13

    Mutations

    Germinal

    5 XPG sequence alterations: 3 point mutations and two small deletions

    Implicated in

    Entity name
    xeroderma pigmentosum, XP group G / cockayne=D5s syndrome, XP/CS
    Disease
    Early skin tumours

    Bibliography

    Pubmed IDLast YearTitleAuthors

    Other Information

    Locus ID:

    NCBI: 2073
    MIM: 133530
    HGNC: 3437
    Ensembl: ENSG00000134899

    Variants:

    dbSNP: 2073
    ClinVar: 2073
    TCGA: ENSG00000134899
    COSMIC: ERCC5

    RNA/Proteins

    Gene IDTranscript IDUniprot
    ENSG00000134899ENST00000472151F2Z2A1
    ENSG00000134899ENST00000535557P28715
    ENSG00000134899ENST00000602836R4GMW8
    ENSG00000134899ENST00000651002A0A494C113
    ENSG00000134899ENST00000651470A0A494C0S2
    ENSG00000134899ENST00000652225P28715
    ENSG00000134899ENST00000652613A0A090HNM7

    Expression (GTEx)

    0
    1
    2
    3
    4
    5

    Pathways

    PathwaySourceExternal ID
    Nucleotide excision repairKEGGko03420
    Nucleotide excision repairKEGGhsa03420
    DNA RepairREACTOMER-HSA-73894
    Nucleotide Excision RepairREACTOMER-HSA-5696398
    Global Genome Nucleotide Excision Repair (GG-NER)REACTOMER-HSA-5696399
    Formation of Incision Complex in GG-NERREACTOMER-HSA-5696395
    Dual Incision in GG-NERREACTOMER-HSA-5696400
    Transcription-Coupled Nucleotide Excision Repair (TC-NER)REACTOMER-HSA-6781827
    Dual incision in TC-NERREACTOMER-HSA-6782135

    Protein levels (Protein atlas)

    Not detected
    Low
    Medium
    High

    PharmGKB

    Entity IDNameTypeEvidenceAssociationPKPDPMIDs
    PA150595617platinumChemicalClinicalAnnotationassociatedPD22158331
    PA445204Ovarian NeoplasmsDiseaseClinicalAnnotationassociatedPD22158331

    References

    Pubmed IDYearTitleCitations
    161952372006Polymorphisms of DNA repair genes and risk of non-small cell lung cancer.112
    223712962012Polymorphisms in the XPG gene and risk of gastric cancer in Chinese populations.97
    162467222005Recognition of RNA polymerase II and transcription bubbles by XPG, CSB, and TFIIH: insights for transcription-coupled repair and Cockayne Syndrome.86
    174666252007XPG stabilizes TFIIH, allowing transactivation of nuclear receptors: implications for Cockayne syndrome in XP-G/CS patients.76
    166090222006Polymorphisms in genes of nucleotide and base excision repair: risk and prognosis of colorectal cancer.71
    187014352008Polygenic model of DNA repair genetic polymorphisms in human breast cancer risk.63
    191163882009A field synopsis on low-penetrance variants in DNA repair genes and cancer susceptibility.63
    270193102016Association of potentially functional variants in the XPG gene with neuroblastoma risk in a Chinese population.63
    146880162004Polymorphisms in DNA repair and metabolic genes in bladder cancer.62
    172995782007Genetic polymorphisms in the nucleotide excision repair pathway and lung cancer risk: a meta-analysis.58

    Citation

    Anne Stary ; Alain Sarasin

    ERCC5 (xeroderma pigmentosum, complementation group G)

    Atlas Genet Cytogenet Oncol Haematol. 2001-05-01

    Online version: http://atlasgeneticsoncology.org/gene/300/meetings/css/case-report-explorer/