XRCC3 (X-ray repair complementing defective repair in Chinese hamster cells 3)
2005-11-01 Ulla Vogel   AffiliationNational Research Centre for the Working Environment, Lersø Parkalle 105, DK-2100 Copenhagen O, Denmark
DNA/RNA
Description
17 800 bp, 9 exons
Transcription
2,504 bp
Proteins
Description
346 amino acids
Function
XRCC3 is required for efficient repair of double strand breaks via homologous recombinational repair (link), for correct chromosomal segregation and for repair of DNA cross links. Inactivation of XRCC3 in CHO cells results in increased radiation and cisplatin sensitivity. In human cells, XRCC3 forms a complex with Rad51C which is recruited early to DNA damage. Inactivation of XRCC3 in human cells leads to a two-fold sensitivity to DNA cross-linking agents, impaired Rad51 focus formation, elevated chromosome aberrations and five to seven-fold increased endoreduplication.
Homology
XRCC3 is a paralog to rad51
Implicated in
Entity name
No human disease has been linked to inactivation of XRCC3. However, polymorphisms in XRCC3 may be associated with increased cancer risk (see below).
Note
Genetic Epidemiology:
The most frequent polymorphism in XRCC3 is XRCC3 C18067T which results in a Thr to Met amino acid substitution at codon 241. Carriers of the variant T-allele of XRCC3 T241M have higher DNA adduct levels in lymphocyte DNA compared to homozygous C-allele carriers, indicating that the polymorphism is associated with lowered DNA repair capacity. The variant allele of XRCC3 T241M polymorphism has been associated with increased risk of squamous cell carcinoma of the head and neck in one study while another study found no association. No association has previously been found with colon cancer, non-melanoma skin cancer, prostate cancer, gastric cancer, ovarian cancer. Conflicting results have been published on the association with breast cancer, bladder cancer, malignant melanoma and lung cancer.
Two frequent SNP are upstream of XRCC3 T241M have also been studied, namely XRCC3 A4541G and XRCC3 A17897G. Neither polymorphism gives rise to amino acid changes. The variant allele of A17897G has been associated with decreased risk of breast cancer and ovarian cancer. The same tendency, but no significant associations was found for lung cancer.
XRCC3 A4541G was not associated to risk of breast cancer or lung cancer. However, homozygote carriers of the variant allele had lower risk of serous epithelial ovarian cancer.
The most frequent polymorphism in XRCC3 is XRCC3 C18067T which results in a Thr to Met amino acid substitution at codon 241. Carriers of the variant T-allele of XRCC3 T241M have higher DNA adduct levels in lymphocyte DNA compared to homozygous C-allele carriers, indicating that the polymorphism is associated with lowered DNA repair capacity. The variant allele of XRCC3 T241M polymorphism has been associated with increased risk of squamous cell carcinoma of the head and neck in one study while another study found no association. No association has previously been found with colon cancer, non-melanoma skin cancer, prostate cancer, gastric cancer, ovarian cancer. Conflicting results have been published on the association with breast cancer, bladder cancer, malignant melanoma and lung cancer.
Two frequent SNP are upstream of XRCC3 T241M have also been studied, namely XRCC3 A4541G and XRCC3 A17897G. Neither polymorphism gives rise to amino acid changes. The variant allele of A17897G has been associated with decreased risk of breast cancer and ovarian cancer. The same tendency, but no significant associations was found for lung cancer.
XRCC3 A4541G was not associated to risk of breast cancer or lung cancer. However, homozygote carriers of the variant allele had lower risk of serous epithelial ovarian cancer.
Article Bibliography
| Pubmed ID | Last Year | Title | Authors |
|---|---|---|---|
| 15924337 | 2005 | Polymorphisms in DNA repair genes and epithelial ovarian cancer risk. | Auranen A et al |
| 11489761 | 2001 | No association between the XPD (Lys751G1n) polymorphism or the XRCC3 (Thr241Met) polymorphism and lung cancer risk. | David-Beabes GL et al |
| 12376526 | 2002 | DNA repair gene XRCC3 241Met variant is not associated with risk of cutaneous malignant melanoma. | Duan Z et al |
| 15914210 | 2005 | Basal cell carcinoma and variants in genes coding for immune response, DNA repair, folate and iron metabolism. | Festa F et al |
| 15372620 | 2004 | Xrcc3 is recruited to DNA double strand breaks early and independent of Rad51. | Forget AL et al |
| 11025669 | 2000 | Mammalian recombination-repair genes XRCC2 and XRCC3 promote correct chromosome segregation. | Griffin CS et al |
| 14578164 | 2004 | Polymorphisms in DNA double-strand break repair genes and breast cancer risk in the Nurses' Health Study. | Han J et al |
| 15802298 | 2005 | Selected DNA repair polymorphisms and gastric cancer in Poland. | Huang WY et al |
| 16030112 | 2005 | Selected genetic polymorphisms in MGMT, XRCC1, XPD, and XRCC3 and risk of head and neck cancer: a pooled analysis. | Huang WY et al |
| 15312685 | 2004 | XRCC3 polymorphisms and risk of lung cancer. | Jacobsen NR et al |
| 12023982 | 2002 | Variants in DNA double-strand break repair genes and breast cancer susceptibility. | Kuschel B et al |
| 9660962 | 1998 | XRCC2 and XRCC3, new human Rad51-family members, promote chromosome stability and protect against DNA cross-links and other damages. | Liu N et al |
| 11304692 | 2001 | DNA repair gene polymorphisms, bulky DNA adducts in white blood cells and bladder cancer in a case-control study. | Matullo G et al |
| 11532866 | 2001 | XRCC1, XRCC3, XPD gene polymorphisms, smoking and (32)P-DNA adducts in a sample of healthy subjects. | Matullo G et al |
| 12865926 | 2003 | Lack of involvement of nucleotide excision repair gene polymorphisms in colorectal cancer. | Mort R et al |
| 15333465 | 2004 | Specific combinations of DNA repair gene variants and increased risk for non-small cell lung cancer. | Popanda O et al |
| 15816518 | 2005 | A comparison of response to cisplatin, radiation and combined treatment for cells deficient in recombination repair pathways. | Raaphorst GP et al |
| 16030105 | 2005 | Genetic variants of DNA repair genes and prostate cancer: a population-based study. | Ritchey JD et al |
| 14688016 | 2004 | Polymorphisms in DNA repair and metabolic genes in bladder cancer. | Sanyal S et al |
| 12115490 | 2002 | A variant of the DNA repair gene XRCC3 and risk of squamous cell carcinoma of the head and neck: a case-control analysis. | Shen H et al |
| 14652287 | 2003 | Polymorphisms of the DNA repair genes XRCC1, XRCC3, XPD, interaction with environmental exposures, and bladder cancer risk in a case-control study in northern Italy. | Shen M et al |
| 12565173 | 2003 | Polymorphisms of XRCC1 and XRCC3 genes and susceptibility to breast cancer. | Smith TR et al |
| 12223443 | 2002 | DNA repair gene XRCC3 codon 241 polymorphism, its interaction with smoking and XRCC1 polymorphisms, and bladder cancer risk. | Stern MC et al |
| 15734952 | 2005 | Double-strand break repair gene polymorphisms and risk of breast or ovarian cancer. | Webb PM et al |
| 11059748 | 2000 | A variant within the DNA repair gene XRCC3 is associated with the development of melanoma skin cancer. | Winsey SL et al |
| 15679883 | 2005 | Polymorphisms of the XRCC1, XRCC3, & XPD genes, and colorectal cancer risk: a case-control study in Taiwan. | Yeh CC et al |
| 14749735 | 2004 | XRCC3 deficiency results in a defect in recombination and increased endoreduplication in human cells. | Yoshihara T et al |
Other Information
Locus ID:
NCBI: 7517
MIM: 600675
HGNC: 12830
Ensembl: ENSG00000126215
Variants:
dbSNP: 7517
ClinVar: 7517
TCGA: ENSG00000126215
COSMIC: XRCC3
RNA/Proteins
Expression (GTEx)
Pathways
PharmGKB
| Entity ID | Name | Type | Evidence | Association | PK | PD | PMIDs |
|---|---|---|---|---|---|---|---|
| PA128406956 | fluorouracil | Chemical | ClinicalAnnotation | associated | PD | 17549067 | |
| PA164713176 | Platinum compounds | Chemical | ClinicalAnnotation | associated | PD | 23940523, 27248474 | |
| PA443622 | Carcinoma, Non-Small-Cell Lung | Disease | ClinicalAnnotation | associated | PD | 23940523, 27248474 | |
| PA446108 | Colorectal Neoplasms | Disease | ClinicalAnnotation | associated | PD | 17549067 | |
| PA450085 | irinotecan | Chemical | ClinicalAnnotation | associated | PD | 17549067 | |
| PA450198 | leucovorin | Chemical | ClinicalAnnotation | associated | PD | 17549067 |
References
| Pubmed ID | Year | Title | Citations |
|---|---|---|---|
| 37006067 | 2023 | XRCC3 and NBS1 gene polymorphisms modulate the risk of pre-oral cancer and oral cancer in the North Indian population. | 1 |
| 37212185 | 2023 | Systematic evaluation of the association between a missense variant in XRCC3 gene splicing site and the pathogenesis of ovarian cancer. | 0 |
| 37522793 | 2023 | Association of RAD51, XRCC1, XRCC2, and XRCC3 Polymorphisms with Risk of Breast Cancer. | 0 |
| 37774058 | 2023 | Impact of Interaction between Single Nucleotide Polymorphism of XRCC1, XRCC2, XRCC3 with Tumor Suppressor Tp53 Gene Increases Risk of Breast Cancer: A Hospital Based Case-Control Study. | 2 |
| 37006067 | 2023 | XRCC3 and NBS1 gene polymorphisms modulate the risk of pre-oral cancer and oral cancer in the North Indian population. | 1 |
| 37212185 | 2023 | Systematic evaluation of the association between a missense variant in XRCC3 gene splicing site and the pathogenesis of ovarian cancer. | 0 |
| 37522793 | 2023 | Association of RAD51, XRCC1, XRCC2, and XRCC3 Polymorphisms with Risk of Breast Cancer. | 0 |
| 37774058 | 2023 | Impact of Interaction between Single Nucleotide Polymorphism of XRCC1, XRCC2, XRCC3 with Tumor Suppressor Tp53 Gene Increases Risk of Breast Cancer: A Hospital Based Case-Control Study. | 2 |
| 35191782 | 2022 | The association of oxidative stress and DNA damage with XRCC1 and XRCC3 polymorphisms in radiology technicians. | 0 |
| 35319340 | 2022 | Association of genetic polymorphisms in DNA repair genes ERCC2 Asp312Asn (rs1799793), ERCC2 Lys 751 Gln (rs13181), XRCC1 Arg399 Gln (rs25487) and XRCC3 Thr 241Met (rs861539) with the susceptibility of lung cancer in Saudi population. | 0 |
| 35978646 | 2022 | Association between XRCC3 rs861539 Polymorphism and the Risk of Ovarian Cancer: Meta-Analysis and Trial Sequential Analysis. | 2 |
| 36264998 | 2022 | Association between XRCC3 p.Thr241Met polymorphism and risk of glioma: A systematic review and meta-analysis. | 2 |
| 35191782 | 2022 | The association of oxidative stress and DNA damage with XRCC1 and XRCC3 polymorphisms in radiology technicians. | 0 |
| 35319340 | 2022 | Association of genetic polymorphisms in DNA repair genes ERCC2 Asp312Asn (rs1799793), ERCC2 Lys 751 Gln (rs13181), XRCC1 Arg399 Gln (rs25487) and XRCC3 Thr 241Met (rs861539) with the susceptibility of lung cancer in Saudi population. | 0 |
| 35978646 | 2022 | Association between XRCC3 rs861539 Polymorphism and the Risk of Ovarian Cancer: Meta-Analysis and Trial Sequential Analysis. | 2 |
Citation
Ulla Vogel
XRCC3 (X-ray repair complementing defective repair in Chinese hamster cells 3)
Atlas Genet Cytogenet Oncol Haematol. 2005-11-01
Online version: http://atlasgeneticsoncology.org/gene/335/xrcc3-(x-ray-repair-complementing-defective-repair-in-chinese-hamster-cells-3)
