CSTA (cystatin A (stefin A))
2008-07-01 Zala Jevnikar  , Janko Kos   AffiliationFaculty of Pharmacy, University of Ljubljana, Ljubljana, Slovenia
Identity
HGNC
LOCATION
3q21.1
LOCUSID
ALIAS
AREI,PSS4,STF1,STFA
FUSION GENES
DNA/RNA
Description
The gene for human stefin A is located on chromosome 3q21 and it comprises three exons of 111 bp, 102 bp and 226 bp in length, while the lengths of the 1st and 2nd intron are approximately 14 Kbp and 4 Kbp, respectively. The conserved sequence of QVVAG is encoded in the 2nd exon and is not inserted by any introns.
Transcription
The transcript length of stefin A mRNA is 294 bps. Binding sites for AP-2 (Activating Protein 2) and Sp1 (Selective Promoter Factor 1) regulatory elements are present in the promoter region and an AP-1 (Activating Protein 1) binding site in the 1st intron.
Proteins

Ribbon representation of the minimised average structure of stefin A, illustrating the 5-stranded antiparallel b-sheet (with the strands marked A to E) wrapped around the central a-helix with the C-terminal loop running along the convex face of the sheet (Martin et al., 1995).
Description
Stefin A belongs to the cystatin superfamily of cysteine protease inhibitors. The lack of a signal sequence and disulfide bonds makes stefins distinct from other members of the cystatin superfamily. Human stefin A is a single chain protein consisting of 98 amino acid residues, with a molecular mass of 11 kDa. Stefin A is an acidic protein with pI values between 4.5 - 5.0. Like other members of the cystatin superfamily, stefin A is reversible and competitive inhibitor of cysteine proteases, particularly cathepsin L and cathepsin S with Ki values in the picomolar range whereas cathepsin B inhibition is weaker (Ki 10-8M) .
Expression
Stefin A is expressed and localized most abundantly in epithelial and lymphoid tissue.
Function
Besides protection of cytosolyc and cytoskeleton proteins from degradation by cysteine proteases accidentally released from lysosmes, several other functions have been suggested for stefin A. It may be important in the control of normal keratinocyte proliferation and differentiation. Also, it has been proposed to play a role in apoptosis, since apoptotic bodies consistently stain for inhibitor, which also correlates with p53 activation. Stefin A should also protect epithelial and lymphoid tissues from cysteine proteases produced by pathogens invading the body. Increased levels of stefin A were found in inflammatory skin samples and psoriatic epidermis and in inflamed gingival tissue homogenates from patients with periodontal inflammatory diseases. Recent genetic studies identified also mouse stefin A to be involved in a control of ovarian follicular growth and maturation.
Homology
Human stefin A exhibit a high degree of homology to other cysteine protease inhibitors of the cystatin superfamily which includes human stefin B and the homologues in other species such as cystatins alpha and beta in rat, bovine thymus stefin C, porcine thymus stefins D1 and D2, mouse stefins A(1-4) and others.
Implicated in
Entity name
Invasive cancers
Disease
Higher levels of stefin A in tumours have been determined in lung cancer, breast cancer, head and neck cancer and prostate cancer as well as in murine lymphosarcomas, hepatomas and Lewis lung carcinomas. These higher levels, up to a certain level, may counter-balance the excessive activity of cysteine cathepsins, associated with matrix remodelling resulting in the progression of the disease. On the other hand, high cytosolic levels of stefin A may be relevant for regulation of apoptosis, when initiated via lysosomal cell death pathway inhibiting cathepsin B, which was proposed as a dominant execution protease in the lysosomal apoptotic pathways, induced in a variety of tumour cells by tumour necrosis factor alpha ( TNF-alpha ). In some studies lower levels of stefins in tumours have been reported. For example, stefin A immunoreactivity was lower in lymphomas, in tumours of squamous epithelial cell origin as well as in prostate and brain tumours. Lower mRNA levels of stefin A have been reported in breast and esophagus tumours as compared to adjacent control tissues.
Although stefins are cytosolic proteins, stefin A has also been detected in body fluids of cancer patients, such as ascitic fluid from patients with ovarian carcinoma and in bronhoalveolar fluid of lung cancer patients. Increased serum levels of stefin A in patients with hepatocellular carcinoma and liver cirrhosis correlated with tumour size and with a number of neoplastic lesions. Stefin A were moderately increased also in patients with colorectal cancer or lung cancer.
Although stefins are cytosolic proteins, stefin A has also been detected in body fluids of cancer patients, such as ascitic fluid from patients with ovarian carcinoma and in bronhoalveolar fluid of lung cancer patients. Increased serum levels of stefin A in patients with hepatocellular carcinoma and liver cirrhosis correlated with tumour size and with a number of neoplastic lesions. Stefin A were moderately increased also in patients with colorectal cancer or lung cancer.
Prognosis
Higher levels of stefin A in tumour tissues have been shown to correlate with a favourable prognosis of cancer patients. A significant prognostic value of stefin A was determined in patients with lung and head and neck cancer. In the latter, high stefin A tumour levels were found as a strong factor for prediction of prognosis also in multivariant analysis when correlated with established clinical parameters. In prostate tumours higher cathepsin B/stefin A ratio were associated with more aggressive behaviour of prostate cancer. On the other hand, higher levels of stefin A in body fluids have been associated with a poor prognosis of cancer patients. Alterations in secretion may result in higher extracellular and lower intracellular levels of stefin A, therefore, a reverse correlation with patient survival is to be expected.
Oncogenesis
Increased levels of cysteine protease activity, not being balanced by a corresponding increase of cysteine protease inhibitors are associated with progression of malignant disease and poor patients prognosis. Enhanced expression of stefin A would be expected to diminish the tumour-associated proteolytic activity and indeed, there is evidence of a suppressive role of stefin A in various cancer types. Transfection of stefin A cDNA into human EC9706 esophageal squamous cell carcinoma cells inhibits tumour growth, angiogenesis, invasion, and metastasis, and this is mainly through the inhibiting of cathepsin B activity.
Article Bibliography
| Pubmed ID | Last Year | Title | Authors |
|---|---|---|---|
| 9007972 | 1997 | Friends and relations of the cystatin superfamily--new members and their evolution. | Brown WM et al |
| 2004763 | 1991 | Mapping of the gene for human cysteine proteinase inhibitor stefin A, STF1, to chromosome 3cen-q21. | Hsieh WT et al |
| 15893421 | 2006 | Towards novel anti-cancer strategies based on cystatin function. | Keppler D et al |
| 10690531 | 2000 | Cysteine proteinase inhibitors stefin A, stefin B, and cystatin C in sera from patients with colorectal cancer: relation to prognosis. | Kos J et al |
| 9769367 | 1998 | Cysteine proteinases and their endogenous inhibitors: target proteins for prognosis, diagnosis and therapy in cancer (review). | Kos J et al |
| 16361563 | 2005 | Overexpression of stefin A in human esophageal squamous cell carcinoma cells inhibits tumor cell growth, angiogenesis, invasion, and metastasis. | Li W et al |
| 7869384 | 1995 | The three-dimensional solution structure of human stefin A. | Martin JR et al |
| 7575465 | 1995 | Characterization by spectroscopic, kinetic and equilibrium methods of the interaction between recombinant human cystatin A (stefin A) and cysteine proteinases. | Pol E et al |
| 7541394 | 1995 | Expression of acid cysteine proteinase inhibitor (ACPI) in the normal human prostate, benign prostatic hyperplasia and adenocarcinoma. | Söderström KO et al |
| 15144947 | 2004 | Cysteine cathepsins (proteases)--on the main stage of cancer? | Turk V et al |
Other Information
Locus ID:
NCBI: 1475
MIM: 184600
HGNC: 2481
Ensembl: ENSG00000121552
Variants:
dbSNP: 1475
ClinVar: 1475
TCGA: ENSG00000121552
COSMIC: CSTA
RNA/Proteins
| Gene ID | Transcript ID | Uniprot |
|---|---|---|
| ENSG00000121552 | ENST00000264474 | P01040 |
| ENSG00000121552 | ENST00000479204 | C9J0E4 |
Expression (GTEx)
Pathways
| Pathway | Source | External ID |
|---|---|---|
| Developmental Biology | REACTOME | R-HSA-1266738 |
| Keratinization | REACTOME | R-HSA-6805567 |
| Formation of the cornified envelope | REACTOME | R-HSA-6809371 |
Protein levels (Protein atlas)
References
| Pubmed ID | Year | Title | Citations |
|---|---|---|---|
| 36963524 | 2023 | Correlated with better prognosis, CSTA inhibits metastasis of nasopharyngeal carcinoma cells via suppressing AKT signaling through promoting METTL3 degradation. | 1 |
| 36963524 | 2023 | Correlated with better prognosis, CSTA inhibits metastasis of nasopharyngeal carcinoma cells via suppressing AKT signaling through promoting METTL3 degradation. | 1 |
| 35563761 | 2022 | In Silico, In Vitro, and Clinical Investigations of Cathepsin B and Stefin A mRNA Expression and a Correlation Analysis in Kidney Cancer. | 5 |
| 35563761 | 2022 | In Silico, In Vitro, and Clinical Investigations of Cathepsin B and Stefin A mRNA Expression and a Correlation Analysis in Kidney Cancer. | 5 |
| 33831734 | 2021 | Decreased CSTA expression promotes lymphatic metastasis and predicts poor survival in oral squamous cell carcinoma. | 5 |
| 33831734 | 2021 | Decreased CSTA expression promotes lymphatic metastasis and predicts poor survival in oral squamous cell carcinoma. | 5 |
| 31926189 | 2020 | Interplay of ERα binding and DNA methylation in the intron-2 determines the expression and estrogen regulation of cystatin A in breast cancer cells. | 3 |
| 31926189 | 2020 | Interplay of ERα binding and DNA methylation in the intron-2 determines the expression and estrogen regulation of cystatin A in breast cancer cells. | 3 |
| 30854931 | 2019 | Identification of CD37, cystatin A, and IL-23A gene expression in association with brain metastasis: analysis of a prospective trial. | 8 |
| 30854931 | 2019 | Identification of CD37, cystatin A, and IL-23A gene expression in association with brain metastasis: analysis of a prospective trial. | 8 |
| 29642180 | 2018 | Clinicopathological significance of cystatin A expression in progression of esophageal squamous cell carcinoma. | 10 |
| 29642180 | 2018 | Clinicopathological significance of cystatin A expression in progression of esophageal squamous cell carcinoma. | 10 |
| 28119996 | 2017 | Pre-elafin is Involved in Ultraviolet-induced Keratinocyte Apoptosis via Pro-caspase-3 Activation Associated with Cystatin-A Down-regulation. | 0 |
| 28898495 | 2017 | Clinical features of cystatin A expression in patients with pancreatic ductal adenocarcinoma. | 13 |
| 29086922 | 2017 | Myoepithelial cell-specific expression of stefin A as a suppressor of early breast cancer invasion. | 25 |
Citation
Zala Jevnikar ; Janko Kos
CSTA (cystatin A (stefin A))
Atlas Genet Cytogenet Oncol Haematol. 2008-07-01
Online version: http://atlasgeneticsoncology.org/gene/40180/csta-(cystatin-a-(stefin-a))
