PCLAF (PCNA clamp associated factor)
2011-05-01 Shannon Joseph  , Lingbo Hu  , Fiona Simpson   AffiliationUniversity of Queensland Diamantina Institute, University of Queensland, Brisbane, Australia
Identity
HGNC
LOCATION
15q22.31
LOCUSID
ALIAS
KIAA0101,L5,NS5ATP9,OEATC,OEATC-1,OEATC1,PAF,PAF15,p15(PAF),p15/PAF,p15PAF
FUSION GENES
DNA/RNA
Note
Murine gene embryonic expression shows highly restricted expression of KIAA0101 in facial prominences, limbs, somites, brain, spinal cord and hair follicles. It has a suggested role in embryonic development (van Beuren et al., 2007).

DNA diagram. KIAA0101 9768 chr: 62444265-62460755. One transcript, 4 exons.
Description
The gene is composed of 4 exons.
Transcription
One transcript. RNA was expressed as a 1.1 kb message in liver, pancreas and placenta at high levels (Yu et al., 2001). RNA profiling shows it is highly expressed in a number of tumors, specifically in esophageal tumors, anaplastic thyroid carcinomas, pancreatic cancer and non-small-cell lung cancer lines (Yu et al., 2001; Hosokawa et al., 2007). KIAA0101 was also reported to be down-regulated in colon cancer cells (Simpson et al., 2006) and human hepatocellular carcinoma (Guo et al., 2006). Nuclear protein NF-kappaB (p50) (Li et al., 2008), the Hepatitis C virus protein non-structural protein 5A (NS5A) (Shi et al., 2008) and ATF3 (Turchi et al., 2009) bind to the promoter region upstream of the KIAA0101 transcription initiation site promoting transcription in response to DNA damage.
Pseudogene
None.
Proteins
Note
NS5ATP9, Hepatitis C virus NS5A-transactivated protein 9, HCV NS5A-transactivated protein 9, Overexpressed in anaplastic thyroid carcinoma-1, OEATC-1, OEATC1, p15(PAF), L5.

Protein diagram. 111 aa in length, single transcript, mutation I-A at position 65 and mutation F-A at position 68 results in loss of PCNA binding.
Description
The KIAA0101 gene encodes for a 111 amino acid 15 kDa protein. It contains a conserved proliferating cell nuclear antigen (PCNA)-binding motif (Yu et al., 2001).
Expression
Predominant expression in liver, pancreas and brain. Not detected in heart or liver (Yu et al., 2001). The KIAA0101 protein was down-regulated in human hepatocellular carcinoma (Guo et al., 2006; Yuan et al., 2007). Increased protein levels have been detected in pancreatic cancer cells (Hosokawa et al., 2007).
Localisation
Nucleus, mitochondrion (Yu et al., 2001; Guo et al., 2006; Simpson et al., 2006; Yuan et al., 2007).
Function
The KIAA0101 protein binds to PCNA through a conserved PCNA binding domain. PCNA is required for DNA replication or repair as a supplementary factor for DNA polymerase (Paunesku et al., 2001). Proteins bound to PCNA can prevent its binding to DNA polymerase, in turn leading to inhibition of DNA synthesis, cell cycle progression and G1 cell cycle arrest (Yuan et al., 2007). PCNA binding proteins also interact with each other to modulate this regulation. For example, KIAA0101 also interacts in a complex with p33ING1 isoform 2, another PCNA binding protein which is a potential tumor suppressor and regulator of p53 (Simpson et al., 2006). UV irradiation caused increased association of KIAA0101 with PCNA suggesting that this association occurs in response to DNA damage. KIAA0101 also competes with p21WAF for binding to PCNA (Yu et al., 2001). KIAA0101 most recently been shown to act in concert with ATF3 to control genomic integrity after UV stress (Turchi et al., 2009). KIAA0101 expression levels are also regulated by NF-kappaB, this protein family having significant roles in apoptosis, cell cycle regulation and onocgenesis (Hosokawa et al., 2007; Li et al., 2008). Together this data suggests a likely role for KIAA0101 in DNA repair and in protection from UV-induced cell death.
Mutations
Note
Experimentally mutation I-A at position 65 and F-A at position 68 result in loss of PCNA binding (Yu et al., 2001). No other mutations have been described. Screening of colon tumour samples identified a polymorphism in the intronic region just prior to the start of exon 2 (982-15delT) (Simpson et al., 2006).
Implicated in
Entity name
Hepatocellular carcinoma
Disease
KIAA0101 expression was proposed to promote growth advantage and hypoxic insult resistance and be associated with promoting cell proliferation (Yuan et al., 2007). KIAA0101 overexpression was associated with concomitant p53 mutation and vascular invasion (Yuan et al., 2007). This study suggested that high expression in hepatocellular carcinoma was indicative of tumour recurrence, metastatic potential and poor prognosis (Yuan et al., 2007). KIAA0101 was also reported to be downregulated in hepatocellular carcinoma (Guo et al., 2006). This study suggested that KIAA0101 had a growth inhibitory effect.
Entity name
Astrocytomas
Disease
Grade IV (glioblastoma multiforme) astrocytomas had 5 times higher expression levels when compared to Grade I (pilocytic) astrocyomas suggesting that KIAA0101 abundance correlates with malignancy grade in human astrocytes (Marie et al., 2008).
Entity name
Pancreatic cancer
Disease
Pancreatic cells overexpress KIAA0101 both at cDNA and protein level. Knock down of KIAA0101 by siRNA attenuated proliferation and DNA replication whereas overexpression enhanced cell growth in pancreatic cancer cell lines (Hosokawa et al., 2007).
Entity name
Anaplastic thyroid carcinoma
Disease
Anaplastic thyroid carcinoma cell lines had significant overexpression of KIAA0101. Cell growth was inhibited by silencing KIAA0101 expression using siRNA. KIAA0101 may be oncogenic or cell growth-promoting but the mechanism for this is not understood (Mizutani et al., 2005).
Entity name
Disease
High expression of KIAA0101 (along with CCNB1 (cyclin B1), CDC2, CDKN3A, CKS1B, ANP32E) was associated with better survival/response rate in a univariate analysis following CHOP (cyclophosphamide, vincristine, doxorubicin, prednisone) chemotherapy for follicular lymphoma treatment. Identification of these proteins aims to develop a follicular lymphoma international prognostic index to aid in informing a successful treatment strategy (Bjorck et al., 2005).
Oncogenesis
This gene is thought to be oncogenic through modulation of DNA repair pathways via interaction with PCNA.
Article Bibliography
| Pubmed ID | Last Year | Title | Authors |
|---|---|---|---|
| 15576476 | 2005 | High expression of cyclin B1 predicts a favorable outcome in patients with follicular lymphoma. | Björck E et al |
| 17717129 | 2007 | Genomic profiling of circulating plasma RNA for the analysis of cancer. | Collado M et al |
| 16646990 | 2006 | KIAA0101 (OEACT-1), an expressionally down-regulated and growth-inhibitory gene in human hepatocellular carcinoma. | Guo M et al |
| 17363575 | 2007 | Oncogenic role of KIAA0101 interacting with proliferating cell nuclear antigen in pancreatic cancer. | Hosokawa M et al |
| 18727915 | 2008 | NS5ATP9 gene regulated by NF-kappaB signal pathway. | Li K et al |
| 17960622 | 2008 | Maternal embryonic leucine zipper kinase transcript abundance correlates with malignancy grade in human astrocytomas. | Marie SK et al |
| 20646288 | 2010 | Changes in expression of oestrogen regulated and proliferation genes with neoadjuvant treatment highlight heterogeneity of clinical resistance to the aromatase inhibitor, letrozole. | Miller WR et al |
| 15789362 | 2005 | Overexpressed in anaplastic thyroid carcinoma-1 (OEATC-1) as a novel gene responsible for anaplastic thyroid carcinoma. | Mizutani K et al |
| 7788527 | 1995 | Prediction of the coding sequences of unidentified human genes. III. The coding sequences of 40 new genes (KIAA0081-KIAA0120) deduced by analysis of cDNA clones from human cell line KG-1. | Nagase T et al |
| 11682006 | 2001 | Proliferating cell nuclear antigen (PCNA): ringmaster of the genome. | Paunesku T et al |
| 18068894 | 2008 | NS5ATP9, a gene up-regulated by HCV NS5A protein. | Shi L et al |
| 16288740 | 2006 | The PCNA-associated factor KIAA0101/p15(PAF) binds the potential tumor suppressor product p33ING1b. | Simpson F et al |
| 19219066 | 2009 | ATF3 and p15PAF are novel gatekeepers of genomic integrity upon UV stress. | Turchi L et al |
| 11313979 | 2001 | p15(PAF), a novel PCNA associated factor with increased expression in tumor tissues. | Yu P et al |
| 17875765 | 2007 | Overexpression of KIAA0101 predicts high stage, early tumor recurrence, and poor prognosis of hepatocellular carcinoma. | Yuan RH et al |
| 16815099 | 2007 | Murine embryonic expression of the gene for the UV-responsive protein p15(PAF). | van Bueren KL et al |
Other Information
Locus ID:
NCBI: 9768
MIM: 610696
HGNC: 28961
Ensembl: ENSG00000166803
Variants:
dbSNP: 9768
ClinVar: 9768
TCGA: ENSG00000166803
COSMIC: PCLAF
RNA/Proteins
Expression (GTEx)
Pathways
References
| Pubmed ID | Year | Title | Citations |
|---|---|---|---|
| 36705420 | 2023 | Knockdown of LINC01138 protects human chondrocytes against IL-1β-induced damage by regulating the hsa-miR-1207-5p/KIAA0101 axis. | 0 |
| 36705420 | 2023 | Knockdown of LINC01138 protects human chondrocytes against IL-1β-induced damage by regulating the hsa-miR-1207-5p/KIAA0101 axis. | 0 |
| 34238152 | 2022 | KIAA0101 in Malignant Pleural Mesothelioma: A Potential Diagnostic and Prognostic Marker. | 3 |
| 34792707 | 2022 | KIAA0101 knockdown inhibits glioma progression and glycolysis by inactivating the PI3K/AKT/mTOR pathway. | 5 |
| 35210406 | 2022 | PCLAF promotes neuroblastoma G1/S cell cycle progression via the E2F1/PTTG1 axis. | 12 |
| 35524161 | 2022 | Circ_0005231 promotes the progression of esophageal squamous cell carcinoma via sponging miR-383-5p and regulating KIAA0101. | 3 |
| 36164371 | 2022 | KIAA0101 and IL2RA Were Identified as Core Genes in Hormone-Resistant Nephropathy. | 0 |
| 34238152 | 2022 | KIAA0101 in Malignant Pleural Mesothelioma: A Potential Diagnostic and Prognostic Marker. | 3 |
| 34792707 | 2022 | KIAA0101 knockdown inhibits glioma progression and glycolysis by inactivating the PI3K/AKT/mTOR pathway. | 5 |
| 35210406 | 2022 | PCLAF promotes neuroblastoma G1/S cell cycle progression via the E2F1/PTTG1 axis. | 12 |
| 35524161 | 2022 | Circ_0005231 promotes the progression of esophageal squamous cell carcinoma via sponging miR-383-5p and regulating KIAA0101. | 3 |
| 36164371 | 2022 | KIAA0101 and IL2RA Were Identified as Core Genes in Hormone-Resistant Nephropathy. | 0 |
| 33231712 | 2021 | Synergistic effect of PAF inhibition and X-ray irradiation in non-small cell lung cancer cells. | 6 |
| 33626321 | 2021 | PAF remodels the DREAM complex to bypass cell quiescence and promote lung tumorigenesis. | 23 |
| 33626321 | 2021 | PAF remodels the DREAM complex to bypass cell quiescence and promote lung tumorigenesis. | 23 |
Citation
Shannon Joseph ; Lingbo Hu ; Fiona Simpson
PCLAF (PCNA clamp associated factor)
Atlas Genet Cytogenet Oncol Haematol. 2011-05-01
Online version: http://atlasgeneticsoncology.org/gene/41058/pclaf
