NAT1 (N-acetyltransferase 1 (arylamine N-acetyltransferase))
2009-02-01 Jhon D Ruiz  , José AG Agúndez  , Carmen Martínez  , Elena García-Martín   AffiliationDepartment of Pharmacology, Medical School, University of Extremadura, Badajoz, Spain (JDR, JAGA, CM); Department of Biochemistry & Molecular biology & Genetics, School of Biological Sciences, Badajoz, Spain (EGM)
Identity
HGNC
LOCATION
8p22
IMAGE

LEGEND
Picture adapted from an original prepared by Genetics Home Reference; February 2009.
LOCUSID
ALIAS
AAC1,MNAT,NAT-1,NATI
FUSION GENES
DNA/RNA
Note
In humans NAT1 is located in the NAT cluster that comprises 230 kb and includes two functional genes, NAT1 and NAT2. In other species the number of NAT genes range from 0 to 4.

Structure of the human NAT1 gene and common NAT1 transcripts.
Transcription
The human NAT1 gene has nine exons. The coding region is located in exon 9 and spans 870 bp. Diverse NAT1 transcripts have been reported and two promoters exist. The first promoter, designated as P1 is located in the 5 flanking region of exon 1 and controls two major (a1 and a2) transcripts. The second promoter is located upstream of exon 4 and give rise to at least five (b1 to b5) different transcripts. The different transcripts appear to have different translational efficiencies, although the biological significance of this is unknown (revised in Butcher et al., 2007).
Pseudogene
In humans the NAT locus has a pseudogene designated as NATP.
Proteins
Note
NAT enzymes have been identified in several vertebrate and microorganism species, whereas NAT deficiency in the domestic and wild dog is due to complete absence of NAT genes.
Description
The amino-terminal domain (residues 1-83) consists of five helices and one short beta-strand. The second domain comprises residues 85-192 and consists of nine beta-strands and two short helices. The third domain has a final helix which precedes the carboxy terminal region.
Expression
NAT1 activity is expressed in liver and in many extrahepatic tissues. The transcripts originated from the first promoter, NATa, are expressed in kidney, liver, lung and trachea. However the most common transcripts are those designated as type b in the Figure above and have been detected in all tissues examinated.
Localisation
Arylamine N-acetyltransferases are cytosolic enzymes.
Function
NAT1 is a phase II enzyme that participates in the metabolism of numerous primary arylamines and hydrazine drugs and carcinogens. In addition to their N-acetylation catalytic activity, NAT enzymes have also O-acetylation activity towards N-hydroxyarylamines.
Homology
NAT1 and NAT2 share 87% nucleotide homology in the coding region, whereas NAT1 and NAT2 proteins share 81% amino-acid sequence identity.
Mutations
Note
In humans NAT1 is highly polymorphic. Several polymorphisms, most of which are single nucleotide polymorphisms, and at least 26 different haplotypes have been described. The Figure below shows the positions of NAT1 polymorphisms, taking as a reference the start site in the open reading frame (ORF) in exon 9. Nonsynonymous polymorphisms are labeled in red font. The association of different haplotypes with phenotypes is summarized in the following link: http://louisville.edu/medschool/pharmacology/Human.NAT1.pdf.

Implicated in
Entity name
Lung cancer
Note
Two independent studies have observed a significant association of the NAT1 polymorphism with lung cancer risk (Bouchardy et al., 1998; Wikman et al., 2001). However these studies should be interpreted cautiously because these do not agree on the NAT1 risk genotype. Another study identified an increased risk among carriers of NAT1 plus NAT2 slow genotypes (Gemignani et al., 2007). In a meta-analysis carried out with smokers that suffered from non small-cell lung cancer a relevant association of the NAT1 rapid acetylation genotype was identified (Zienolddiny et al., 2008). Although negative associations have been reported (Perera et al., 2006 ), NAT1 is emerging as the NAT gene most likely related to lung cancer (McKay et al, 2008).
Entity name
Head and neck cancer
Note
Since chemical compounds present in tobacco are inactivated by phase II enzymes, it has been proposed that head and neck cancer risk could be modified by NAT genotypes. Head and neck cancers are strongly associated with smoking, and a few studies have explored the role of NAT1 polymorphisms in the risk of developing head and neck cancer in smokers. However overall findings are inconsistent and associations if present are weak, and indicate either a decreased risk in carriers of the variant NAT1*10 (McKay et al., 2008), an increased risk (Katoh et al., 1998) or a lack of association (Fronhoffs et al., 2001; Henning et al., 1999; Agúndez, 2008).
Entity name
Breast cancer
Note
The NAT1*10 variant allele was associated to increased breast cancer risk among women who consumed well-done meat, although the statistical significance of this finding is low (Krajinovic et al., 2001). Several studies, however, indicate that no major association of NAT polymorphisms and breast cancer risk exists (Agúndez, 2008).
Entity name
Colorectal cancer
Note
A biologically plausible mechanistic hypothesis suggest that rapid NAT1 and/or NAT2 acetylators should more activate heterocyclic amine carcinogens within the colon to their ultimate carcinogenic forms, thereby predisposing them to colorectal cancer. However sufficient evidence is available to rule out a relevant association of NAT genotypes alone with colorectal cancer risk. This evidence is based in nearly thirty studies failed to detect a statistically significant association for NAT1 genotypes both with colorectal cancer or adenomas. In addition meta-analyses (Chen et al., 2005; Ye et al., 2002; Houlston et al., 2001) consistently confirm a lack of a relevant association of NAT1 rapid acetylator genotypes and colorectal cancer risk (revised in Agúndez, 2008).
Entity name
Bladder cancer
Note
No significant association of the NAT1 genotype with bladder cancer risk has been observed in a recent meta-analysis, although the authors found a joint effect of NAT1 rapid genotypes, slow NAT2 genotypes and smoking as factors increasing cancer risk (Sanderson et al., 2007). Overall findings are negative (Okkels et al., 1997), although a significant risk has been described in smokers (Taylor et al., 1998; Hsieh et al., 1999; Cascorbi et al., 2001) and a nearly significant association was observed in individuals exposed to benzidine (Carreon et al., 2006).
Article Bibliography
| Pubmed ID | Last Year | Title | Authors |
|---|---|---|---|
| 18680472 | 2008 | Polymorphisms of human N-acetyltransferases and cancer risk. | Agúndez JA et al |
| 16788383 | 2006 | Functional properties of an alternative, tissue-specific promoter for human arylamine N-acetyltransferase 1. | Barker DF et al |
| 2340091 | 1990 | Human arylamine N-acetyltransferase genes: isolation, chromosomal localization, and functional expression. | Blum M et al |
| 9731715 | 1998 | N-acetyltransferase NAT1 and NAT2 genotypes and lung cancer risk. | Bouchardy C et al |
| 17210686 | 2007 | Induction of human arylamine N-acetyltransferase type I by androgens in human prostate cancer cells. | Butcher NJ et al |
| 16003747 | 2006 | NAT2 slow acetylation and bladder cancer in workers exposed to benzidine. | Carreón T et al |
| 11431340 | 2001 | Association of NAT1 and NAT2 polymorphisms to urinary bladder cancer: significantly reduced risk in subjects with NAT1*10. | Cascorbi I et al |
| 15637738 | 2005 | Relationship between metabolic enzyme polymorphism and colorectal cancer. | Chen K et al |
| 17085660 | 2006 | Classification of breast cancer using genetic algorithms and tissue microarrays. | Dolled-Filhart M et al |
| 11532862 | 2001 | Real-time PCR analysis of the N-acetyltransferase NAT1 allele *3, *4, *10, *11, *14 and *17 polymorphism in squamous cell cancer of head and neck. | Fronhoffs S et al |
| 17259654 | 2007 | Development of lung cancer before the age of 50: the role of xenobiotic metabolizing genes. | Gemignani F et al |
| 1996083 | 1991 | Monomorphic and polymorphic human arylamine N-acetyltransferases: a comparison of liver isozymes and expressed products of two cloned genes. | Grant DM et al |
| 15725609 | 2005 | Effects of N-acetyl transferase 1 and 2 polymorphisms on bladder cancer risk in Caucasians. | Gu J et al |
| 10667461 | 2000 | Molecular genetics and epidemiology of the NAT1 and NAT2 acetylation polymorphisms. | Hein DW et al |
| 12351146 | 2002 | Molecular genetics and function of NAT1 and NAT2: role in aromatic amine metabolism and carcinogenesis. | Hein DW et al |
| 10208649 | 1999 | Association of arylamine N-acetyltransferases NAT1 and NAT2 genotypes to laryngeal cancer risk. | Henning S et al |
| 11487538 | 2001 | Polymorphisms and colorectal tumor risk. | Houlston RS et al |
| 10507782 | 1999 | Genetic polymorphisms of N-acetyltransferase 1 and 2 and risk of cigarette smoking-related bladder cancer. | Hsieh FI et al |
| 9511182 | 1998 | Identification and characterization of variant alleles of human acetyltransferase NAT1 with defective function using p-aminosalicylate as an in-vivo and in-vitro probe. | Hughes NC et al |
| 15226672 | 2004 | Identification of the major promoter and non-coding exons of the human arylamine N-acetyltransferase 1 gene (NAT1). | Husain A et al |
| 17591675 | 2007 | Functional analysis of the human N-acetyltransferase 1 major promoter: quantitation of tissue expression and identification of critical sequence elements. | Husain A et al |
| 10460790 | 1999 | 1998 International Meeting on the Arylamine N-Acetyltransferases: synopsis of the workshop on nomenclature, biochemistry, molecular biology, interspecies comparisons, and role in human disease risk. | Ilett KF et al |
| 16680433 | 2006 | Loss of function polymorphisms in NAT1 protect against spina bifida. | Jensen LE et al |
| 10780274 | 1999 | Role of arylamine N-acetyltransferase 1 and 2 (NAT1 and NAT2) genotypes in susceptibility to oral/pharyngeal and laryngeal cancers. | Jourenkova-Mironova N et al |
| 9630827 | 1998 | Quantitation of three-month intraindividual variability and influence of sex and menstrual cycle phase on CYP1A2, N-acetyltransferase-2, and xanthine oxidase activity determined with caffeine phenotyping. | Kashuba AD et al |
| 9806162 | 1998 | A pilot study testing the association between N-acetyltransferases 1 and 2 and risk of oral squamous cell carcinoma in Japanese people. | Katoh T et al |
| 11291049 | 2001 | Genetic susceptibility to breast cancer in French-Canadians: role of carcinogen-metabolizing enzymes and gene-environment interactions. | Krajinovic M et al |
| 9682272 | 1998 | Variants of N-acetyltransferase NAT1 and a case-control study of colorectal adenomas. | Lin HJ et al |
| 16857211 | 2006 | Arylamine N-acetyltransferase aggregation and constitutive ubiquitylation. | Liu F et al |
| 18199719 | 2008 | Sequence variants of NAT1 and NAT2 and other xenometabolic genes and risk of lung and aerodigestive tract cancers in Central Europe. | McKay JD et al |
| 17392017 | 2007 | Arylamine N-acetyltransferase I. | Minchin RF et al |
| 7717963 | 1995 | Acetylation of p-aminobenzoylglutamate, a folic acid catabolite, by recombinant human arylamine N-acetyltransferase and U937 cells. | Minchin RF et al |
| 9107426 | 1997 | Arylamine N-acetyltransferase 1 (NAT1) and 2 (NAT2) polymorphisms in susceptibility to bladder cancer: the influence of smoking. | Okkels H et al |
| 16835348 | 2006 | Lack of associations among cancer and albumin adducts, ras p21 oncoprotein levels, and CYP1A1, CYP2D6, NAT1, and NAT2 in a nested case-control study of lung cancer within the physicians' health study. | Perera FP et al |
| 16809728 | 2006 | Novel prognostic immunohistochemical biomarker panel for estrogen receptor-positive breast cancer. | Ring BZ et al |
| 11368758 | 2001 | Homology modelling and structural analysis of human arylamine N-acetyltransferase NAT1: evidence for the conservation of a cysteine protease catalytic domain and an active-site loop. | Rodrigues-Lima F et al |
| 17675654 | 2007 | Joint effects of the N-acetyltransferase 1 and 2 (NAT1 and NAT2) genes and smoking on bladder carcinogenesis: a literature-based systematic HuGE review and evidence synthesis. | Sanderson S et al |
| 9721868 | 1998 | The role of N-acetylation polymorphisms in smoking-associated bladder cancer: evidence of a gene-gene-exposure three-way interaction. | Taylor JA et al |
| 9296352 | 1997 | Cytosolic arylamine N-acetyltransferase (NAT) deficiency in the dog and other canids due to an absence of NAT genes. | Trepanier LA et al |
| 11239577 | 2001 | Arylamine N-acetyltransferases - of mice, men and microorganisms. | Upton A et al |
| 7598738 | 1995 | Purification of recombinant human N-acetyltransferase type 1 (NAT1) expressed in E. coli and characterization of its potential role in folate metabolism. | Ward A et al |
| 11266080 | 2001 | Relevance of N-acetyltransferase 1 and 2 (NAT1, NAT2) genetic polymorphisms in non-small cell lung cancer susceptibility. | Wikman H et al |
| 17656365 | 2007 | Structural basis of substrate-binding specificity of human arylamine N-acetyltransferases. | Wu H et al |
| 12165742 | 2002 | Meta-analysis of 20 case-control studies on the N-acetyltransferase 2 acetylation status and colorectal cancer risk. | Ye Z et al |
| 18258609 | 2008 | A comprehensive analysis of phase I and phase II metabolism gene polymorphisms and risk of non-small cell lung cancer in smokers. | Zienolddiny S et al |
Other Information
Locus ID:
NCBI: 9
MIM: 108345
HGNC: 7645
Ensembl: ENSG00000171428
Variants:
dbSNP: 9
ClinVar: 9
TCGA: ENSG00000171428
COSMIC: NAT1
RNA/Proteins
Expression (GTEx)
Pathways
Protein levels (Protein atlas)
PharmGKB
| Entity ID | Name | Type | Evidence | Association | PK | PD | PMIDs |
|---|---|---|---|---|---|---|---|
| PA166114414 | cotinine | Chemical | ClinicalAnnotation | associated | PK | ||
| PA443750 | Colitis, Ulcerative | Disease | VariantAnnotation | associated | PK | ||
| PA443815 | Crohn Disease | Disease | VariantAnnotation | associated | PK | ||
| PA446116 | Inflammatory Bowel Diseases | Disease | VariantAnnotation | associated | PK | ||
| PA450384 | mesalazine | Chemical | VariantAnnotation | associated | PK | ||
| PA451663 | thioguanine | Chemical | VariantAnnotation | associated | PK |
References
| Pubmed ID | Year | Title | Citations |
|---|---|---|---|
| 36329350 | 2023 | Upregulation of cytidine deaminase in NAT1 knockout breast cancer cells. | 1 |
| 37103073 | 2023 | Altered Arylamine N-acetyltransferase 1 and miR-1290 Levels in Childhood Acute Lymphoblastic Leukemia: A Pilot Study. | 1 |
| 36329350 | 2023 | Upregulation of cytidine deaminase in NAT1 knockout breast cancer cells. | 1 |
| 37103073 | 2023 | Altered Arylamine N-acetyltransferase 1 and miR-1290 Levels in Childhood Acute Lymphoblastic Leukemia: A Pilot Study. | 1 |
| 35133049 | 2022 | Deletion of arylamine N-acetyltransferase 1 in MDA-MB-231 human breast cancer cells reduces primary and secondary tumor growth in vivo with no significant effects on metastasis. | 3 |
| 35358480 | 2022 | Polymorphism in the human arylamine N-acetyltransferase 1 gene 3'-untranslated region determines polyadenylation signal usage. | 0 |
| 35918499 | 2022 | Arylamine N-acetyltransferase 1 deficiency inhibits drug-induced cell death in breast cancer cells: switch from cytochrome C-dependent apoptosis to necroptosis. | 0 |
| 35133049 | 2022 | Deletion of arylamine N-acetyltransferase 1 in MDA-MB-231 human breast cancer cells reduces primary and secondary tumor growth in vivo with no significant effects on metastasis. | 3 |
| 35358480 | 2022 | Polymorphism in the human arylamine N-acetyltransferase 1 gene 3'-untranslated region determines polyadenylation signal usage. | 0 |
| 35918499 | 2022 | Arylamine N-acetyltransferase 1 deficiency inhibits drug-induced cell death in breast cancer cells: switch from cytochrome C-dependent apoptosis to necroptosis. | 0 |
| 31809667 | 2021 | NAT1 genetic variation increases asthma risk in children with secondhand smoke exposure. | 3 |
| 33906370 | 2021 | NAT1 is a critical prognostic biomarker and inhibits proliferation of colorectal cancer through modulation of PI3K/Akt/mTOR. | 6 |
| 31809667 | 2021 | NAT1 genetic variation increases asthma risk in children with secondhand smoke exposure. | 3 |
| 33906370 | 2021 | NAT1 is a critical prognostic biomarker and inhibits proliferation of colorectal cancer through modulation of PI3K/Akt/mTOR. | 6 |
| 31910058 | 2020 | Effect arylamine N-acetyltransferase 1 on morphology, adhesion, migration, and invasion of MDA-MB-231 cells: role of matrix metalloproteinases and integrin αV. | 6 |
Citation
Jhon D Ruiz ; José AG Agúndez ; Carmen Martínez ; Elena García-Martín
NAT1 (N-acetyltransferase 1 (arylamine N-acetyltransferase))
Atlas Genet Cytogenet Oncol Haematol. 2009-02-01
Online version: http://atlasgeneticsoncology.org/gene/41497/nat1
