TMF1 (TATA element modulatory factor 1)

2003-08-01  

Identity

HGNC
TMF1
LOCATION
3p14.1
LOCUSID
7110
ALIAS
ARA160,TMF
FUSION GENES
Show Gene Fusions

Other Information

Locus ID:

NCBI: 7110
MIM: 601126
HGNC: 11870
Ensembl: ENSG00000144747

Variants:

dbSNP: 7110
ClinVar: 7110
TCGA: ENSG00000144747
COSMIC: TMF1

RNA/Proteins

Gene IDTranscript IDUniprot
ENSG00000144747ENST00000398559P82094
ENSG00000144747ENST00000398559A0A024R370
ENSG00000144747ENST00000488010F8WF45
ENSG00000144747ENST00000646304A0A2R8Y7M0
ENSG00000144747ENST00000646708P82094

Expression (GTEx)

0
5
10
15
20
25
30
35
40
Adipose - Subcutaneous
Adipose - Visceral
Adrenal Gland
Artery - Aorta
Artery - Tibial
Bladder
Brain - Amygdala
Brain - Anterior cingulate cortex
Brain - Caudate
Brain - Cerebellar Hemisphere
Brain - Cerebellum
Brain - Cortex
Brain - Frontal Cortex
Brain - Hippocampus
Brain - Hypothalamus
Brain - Nucleus accumbens
Brain - Putamen
Brain - Spinal cord
Brain - Substantia nigra
Breast - Mammary Tissue
Cells - Cultured fibroblasts
Cells - EBV - transformed lymphocytes
Cervix - Ectocervix
Cervix - Endocervix
Colon - Sigmoid
Colon - Transverse
Esophagus - Gastroesophageal Junction
Esophagus - Mucosa
Esophagus - Muscularis
Fallopian Tube
Heart - Atrial Appendage
Heart - Left Ventricle
Kidney - Cortex
Kidney - Medulla
Liver
Lung
Minor Salivary Gland
Muscle - Skeletal
Nerve - Tibial
Ovary
Pancreas
Pituitary
Prostate
Skin - Not Sun Exposed
Skin - Sun Exposed
Small Intestine - Terminal Ileum
Spleen
Stomach
Testis
Thyroid
Uterus
Vagina
Whole Blood

Pathways

PathwaySourceExternal ID
Vesicle-mediated transportREACTOMER-HSA-5653656
Membrane TraffickingREACTOMER-HSA-199991
Intra-Golgi and retrograde Golgi-to-ER trafficREACTOMER-HSA-6811442
Retrograde transport at the Trans-Golgi-NetworkREACTOMER-HSA-6811440

Protein levels (Protein atlas)

Not detected
Low
Medium
High
cerebral cortex
cerebellum
hippocampus
caudate
thyroid gland
parathyroid gland
adrenal gland
nasopharynx
bronchus
lung
oral mucosa
salivary gland
esophagus
stomach 1
stomach 2
duodenum
small intestine
colon
rectum
liver
gallbladder
pancreas
kidney
urinary bladder
testis
epididymis
seminal vesicle
prostate
vagina
ovary
fallopian tube
endometrium 1
endometrium 2
cervix, uterine
placenta
breast
heart muscle
smooth muscle
skeletal muscle
soft tissue 1
soft tissue 2
adipose tissue
skin 1
skin 2
appendix
spleen
lymph node
tonsil
bone marrow

References

Pubmed IDYearTitleCitations
295453702018PDGFRβ translocates to the nucleus and regulates chromatin remodeling via TATA element-modifying factor 1.13
295453702018PDGFRβ translocates to the nucleus and regulates chromatin remodeling via TATA element-modifying factor 1.13
244781912014Primary immunodeficiency caused by an exonized retroposed gene copy inserted in the CYBB gene.20
244781912014Primary immunodeficiency caused by an exonized retroposed gene copy inserted in the CYBB gene.20
232398822013Molecular insights into vesicle tethering at the Golgi by the conserved oligomeric Golgi (COG) complex and the golgin TATA element modulatory factor (TMF).47
232398822013Molecular insights into vesicle tethering at the Golgi by the conserved oligomeric Golgi (COG) complex and the golgin TATA element modulatory factor (TMF).47
203796142010Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score.78
203796142010Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score.78
193308322009TMF/ARA160 downregulates proangiogenic genes and attenuates the progression of PC3 xenografts.8
193308322009TMF/ARA160 downregulates proangiogenic genes and attenuates the progression of PC3 xenografts.8
176980612007Functional involvement of TMF/ARA160 in Rab6-dependent retrograde membrane traffic.31
176980612007Functional involvement of TMF/ARA160 in Rab6-dependent retrograde membrane traffic.31

Citation

Dessen P

TMF1 (TATA element modulatory factor 1)

Atlas Genet Cytogenet Oncol Haematol. 2003-08-01

Online version: http://atlasgeneticsoncology.org/gene/42590/tmf1