SLC12A6 (solute carrier family 12 member 6)

2007-02-01  

Identity

HGNC
LOCATION
15q14
LOCUSID
ALIAS
ACCPN,KCC3,KCC3A,KCC3B
FUSION GENES

Other Information

Locus ID:

NCBI: 9990
MIM: 604878
HGNC: 10914
Ensembl: ENSG00000140199

Variants:

dbSNP: 9990
ClinVar: 9990
TCGA: ENSG00000140199
COSMIC: SLC12A6

RNA/Proteins

Gene IDTranscript IDUniprot
ENSG00000140199ENST00000290209Q9UHW9
ENSG00000140199ENST00000354181Q9UHW9
ENSG00000140199ENST00000354181A0A024R9I5
ENSG00000140199ENST00000397702Q9UHW9
ENSG00000140199ENST00000397702A0A024R9K8
ENSG00000140199ENST00000397707Q9UHW9
ENSG00000140199ENST00000458406Q9UHW9
ENSG00000140199ENST00000458406A0A024R9K8
ENSG00000140199ENST00000558589Q9UHW9
ENSG00000140199ENST00000558667Q9UHW9
ENSG00000140199ENST00000558667A0A024R9I5
ENSG00000140199ENST00000559236H0YKJ2
ENSG00000140199ENST00000559484H0YKL8
ENSG00000140199ENST00000559523H0YKQ8
ENSG00000140199ENST00000559664H0YMQ9
ENSG00000140199ENST00000560164B3KXX3
ENSG00000140199ENST00000560332H0YNJ5
ENSG00000140199ENST00000560611Q9UHW9
ENSG00000140199ENST00000560611A0A024R9I5
ENSG00000140199ENST00000561080H0YMQ9
ENSG00000140199ENST00000561120H0YKE6

Expression (GTEx)

0
5
10
15
20
25
30
35

Pathways

PathwaySourceExternal ID
Transmembrane transport of small moleculesREACTOMER-HSA-382551
SLC-mediated transmembrane transportREACTOMER-HSA-425407
Transport of inorganic cations/anions and amino acids/oligopeptidesREACTOMER-HSA-425393
Cation-coupled Chloride cotransportersREACTOMER-HSA-426117

Protein levels (Protein atlas)

Not detected
Low
Medium
High

References

Pubmed IDYearTitleCitations
365424842023Late-onset sensory-motor axonal neuropathy, a novel SLC12A6-related phenotype.0
365424842023Late-onset sensory-motor axonal neuropathy, a novel SLC12A6-related phenotype.0
357333992022Novel heterozygous variants of SLC12A6 in Japanese families with Charcot-Marie-Tooth disease.0
357333992022Novel heterozygous variants of SLC12A6 in Japanese families with Charcot-Marie-Tooth disease.0
334656742021ZnR/GPR39 controls cell migration by orchestrating recruitment of KCC3 into protrusions, re-organization of actin and activation of MMP.4
334656742021ZnR/GPR39 controls cell migration by orchestrating recruitment of KCC3 into protrusions, re-organization of actin and activation of MMP.4
314397212020De novo variants in SLC12A6 cause sporadic early-onset progressive sensorimotor neuropathy.7
314397212020De novo variants in SLC12A6 cause sporadic early-onset progressive sensorimotor neuropathy.7
308687382019First case of Roma ethnic origin with Andermann syndrome: A novel frameshift mutation in exon 20 of SLC12A6 gene.2
313930942019SLC12A ion transporter mutations in sporadic and familial human congenital hydrocephalus.14
308687382019First case of Roma ethnic origin with Andermann syndrome: A novel frameshift mutation in exon 20 of SLC12A6 gene.2
313930942019SLC12A ion transporter mutations in sporadic and familial human congenital hydrocephalus.14
300381112018Identification of a novel SLC12A6 pathogenic variant associated with hereditary motor and sensory neuropathy with agenesis of the corpus callosum (HMSN/ACC) in a non-French-Canadian family.3
300381112018Identification of a novel SLC12A6 pathogenic variant associated with hereditary motor and sensory neuropathy with agenesis of the corpus callosum (HMSN/ACC) in a non-French-Canadian family.3
272304132016KCC3 axonopathy: neuropathological features in the central and peripheral nervous system.7

Citation

Dessen P

SLC12A6 (solute carrier family 12 member 6)

Atlas Genet Cytogenet Oncol Haematol. 2007-02-01

Online version: http://atlasgeneticsoncology.org/gene/43655/slc12a6