GZMA (granzyme A (granzyme 1, cytotoxic T-lymphocyte-associated serine esterase 3))

2011-09-01   Elena Catalan , Diego Sanchez-Martinez , Julián Pardo 

Dpto Bioquimica y Biologia Molecular y Celular, Fac Ciencias, Univ Zaragoza, Spain (EC, DSM, JP); Fundacion Aragon I+D (ARAID), Zaragoza, Spain (JP)

Identity

HGNC
LOCATION
5q11.2
LOCUSID
ALIAS
CTLA3,HFSP

DNA/RNA

Atlas Image
Figure 1. Genomic organization of human GZMA. A, human GZMA cluster. Arrow indicate the direction of transcription. B, representation of the GZMA genetic locus. White: untranslated regions; Blue: leader sequence; Green: mature enzyme. Solid lanes: splicing between the first and second exons. gre: glucocorticoid response element (adapted from Ruike et al., 2007).

Description

The GZMA gene, with 7607 bases in length, consists of 5 exons and 4 introns. GZMA gene is located in a gene cluster together with granzyme K (figure 1) (Grossman et al., 2003).

Transcription

There are at least two transcripts of human GZMA whose expression is differentially regulated by glucocorticoid (Ruike et al., 2007). These transcripts generate two isoforms, GZMAα and GZMAβ, which have respective first exons: exon 1a and exon 1b (figure 1):
GZMAα (exon 1a): canonical sequence,
GZMAβ (exon 1b): lack aa 1-17; aa 18-23 LLLIPE --> MTKGLR.

Proteins

Atlas Image
Figure 2. Diagram of the crystal structure of human granzyme A dimer (Bell et al., 2003; Hink-Schauer et al., 2003). The cystein groups involved in disulphide bond-mediated dimer (green) and the three aminoacids forming the catalytic triad (red, blue and yellow) are shown. Representation from PDB (accession code 1OP8) deposited by Hink-Schauer C, Estébanez-Perpiñá E, Kurschus FC, Bode W, Jenne DE. Nat Struct Biol. 2003 Jul;10(7):535-40.

Description

Granzyme A is a tryptase (cleave proteins after Lys or Arg residues) expressed mainly in cytotoxic cells (cytotoxic T and Natural Killer cells) (Masson et al., 1986; Simon et al., 1986; Young et al., 1986). Protein is expressed as a preproenzyme (Jenne et al., 1988) containing a signal sequence that mediates targeting of the nascent enzyme to the ER. Cleavage of the signal peptide produces an inactive proenzyme that contains an N-terminal dipeptide that needs to be cleaved to produce an active protease. In the Golgi, a mannose-6-phosphate tag is added for transporting the proenzyme to cytotoxic granules. Within the cytotoxic granule, the N-terminal dipeptide is removed by cathepsin C (dipeptidyl peptidase I) (Pham et al., 1999), producing the active enzyme that is kept inactive at low pH. Native granzyme A is expressed as a dimer (Bell et al., 2003; Hink-Schauer et al., 2003).

Expression

Cytotoxic CD8+ T cells, Natural Killer cells, CD4+ T cells, gamma-delta T cells, type II pneumocytes, alveolar macrophages, bronchiolar epithelial cells.

Localisation

Cytotoxic granules.

Function

Granzyme A is delivered from CTL or NK cytotoxic granules to the cytoplasm of target cell by a mechanism dependent on perforin (Baran et al., 2009; Praper et al., 2011; Thiery et al., 2011).
There are some controversial findings about the physiological function of gzmA.
It has been reported that human GzmA induces perforin-mediated caspase-independent cell death in some tumors cell lines (Hayes et al., 1989; Shi et al., 1992; Beresford et al., 1999; Shresta et al., 1999; Pardo et al., 2004). GzmA translocates to the nucleus and mitochondria where key substrates such as mitochondrial complex I protein, NADH dehydrogenase Fe-S protein 3 (NDUFS3) is cleaved, inducing the production of Radical Oxygen Species (ROS). ROS production induces the activation of the SET complex that translocates into the nucleus in order to repair DNA damage induced by ROS. Once there, granzyme A cleaves components of the endoplasmic reticulum-associated SET complex, releasing the endonuclease NM23H1 that induces single strand nicks in the DNA and ultimately cell death (Lieberman, 2011).
Other authors have reported that the cytotoxic potential of granzyme A is low, but induce expression of pro-inflammatory cytokines in monocytes-like cells by a caspase-1 dependent mechanism (Metkar et al., 2008).
Granzyme A is able to cleave several extracellular substrates like thrombin receptor, fibronectin, collagen IV, proteinase-activated receptor-2, Pro-urokinase plasminogen activator and myelin basic protein (Kramer et al., 1987; Buzza et al., 2006; Hendel et al., 2011).
Granzyme and granzyme B double deficient mice are more susceptible than granzyme B deficient mice to transplanted tumors suggesting a contribution of granzyme A to tumor control in vivo (Pardo et al., 2002; Cao et al., 2007).

Homology

Mouse granzyme A;
Rat granzyme A;
Chicken granzyme A;
Fish granzyme A (Common Carp, Atlantic cod, Channel catfish) (Praveen et al., 2006; Praveen et al., 2006; Wernersson et al., 2006).

Mutations

Note

Not known.

Implicated in

Entity name
Sepsis (Froelich et al., 2009; Hendel et al., 2011)
Disease
Several findings suggest that gzmA contributes to septic shock. Native and recombinant human granzyme A as well as a human NK cell line expressing gzmA induces human adherent peripheral blood mononuclear cells to express proinflammatory cytokines including interleukin-beta interleukin-6, inteleukin-8 and TNF-alpha (Sower et al., 1996; Metkar et al., 2008). Granzyme A deficient mice are more resistant than wild type mice to septic shock induced by LPS (Metkar et al., 2008).
Entity name
Rheumatoid arthritis
Prognosis
Granzyme A levels are higher in serum and synovial fluid of patients with rheumatoid arthritis (Griffiths et al., 1992; Nordstrom et al., 1992; Kummer et al., 1994; Tak et al., 1994; Muller-Ladner et al., 1995; Spaeny-Dekking et al., 1998; Tak et al., 1999).
Entity name
Chronic obstructive pulmonary disease
Prognosis
Granzyme A is expressed in type II pneumocytes of patients with severe chronic obstructive pulmonary disease (Vernooy et al., 2007).
Entity name
Hypersensitivity pneumonitis
Prognosis
Granzyme A is elevated in bronchoalveolar lavage fluid from patients with hypersensitivity pneumonitis (Tremblay et al., 2000).
Entity name
Sjögrens syndrome
Prognosis
Granzyme A is expressed in salivary glands from patients with Sjögrens syndrome (Alpert et al., 1994).
Entity name
Poxvirus infection
Disease
Granzyme A deficient mice are more susceptible than wild type mice to mousepox virus (ectromelia) (Mullbacher et al., 1996).
Entity name
Herpes virus infection
Disease
Granzyme A deficient mice are more susceptible than wild type mice to herpes simplex virus type 1 (HSV-1) (Pereira et al., 2000) and mouse cytomegalovirus (CMV) infection (Riera et al., 2000).

Bibliography

Pubmed IDLast YearTitleAuthors

Other Information

Locus ID:

NCBI: 3001
MIM: 140050
HGNC: 4708
Ensembl: ENSG00000145649

Variants:

dbSNP: 3001
ClinVar: 3001
TCGA: ENSG00000145649
COSMIC: GZMA

RNA/Proteins

Gene IDTranscript IDUniprot
ENSG00000145649ENST00000274306P12544

Expression (GTEx)

0
10
20
30
40
50
60
70

Pathways

PathwaySourceExternal ID
Neuroactive ligand-receptor interactionKEGGko04080
Neuroactive ligand-receptor interactionKEGGhsa04080

Protein levels (Protein atlas)

Not detected
Low
Medium
High

References

Pubmed IDYearTitleCitations
152384162004Differential expression of granzymes A and B in human cytotoxic lymphocyte subsets and T regulatory cells.151
177034122007Genetic susceptibility to respiratory syncytial virus bronchiolitis is predominantly associated with innate immune genes.100
189510482008Human and mouse granzyme A induce a proinflammatory cytokine response.94
184858752008Granzyme A cleaves a mitochondrial complex I protein to initiate caspase-independent cell death.65
171167522006The major human and mouse granzymes are structurally and functionally divergent.56
267525172016Killer lymphocytes use granulysin, perforin and granzymes to kill intracellular parasites.47
210684032010Human eosinophils exert TNF-α and granzyme A-mediated tumoricidal activity toward colon carcinoma cells.38
265222612016Association Between Response to Etrolizumab and Expression of Integrin αE and Granzyme A in Colon Biopsies of Patients With Ulcerative Colitis.27
192589232009Genetic susceptibility to respiratory syncytial virus bronchiolitis in preterm children is associated with airway remodeling genes and innate immune genes.26
119099732002HMG2 interacts with the nucleosome assembly protein SET and is a target of the cytotoxic T-lymphocyte protease granzyme A.23

Citation

Elena Catalan ; Diego Sanchez-Martinez ; Julián Pardo

GZMA (granzyme A (granzyme 1, cytotoxic T-lymphocyte-associated serine esterase 3))

Atlas Genet Cytogenet Oncol Haematol. 2011-09-01

Online version: http://atlasgeneticsoncology.org/gene/51130/gene-fusions-explorer/