SLC6A1 (solute carrier family 6 member 1)

2013-01-01  

Identity

HGNC
LOCATION
3p25.3
LOCUSID
ALIAS
GABATHG,GABATR,GAT1,MAE
FUSION GENES

Other Information

Locus ID:

NCBI: 6529
MIM: 137165
HGNC: 11042
Ensembl: ENSG00000157103

Variants:

dbSNP: 6529
ClinVar: 6529
TCGA: ENSG00000157103
COSMIC: SLC6A1

RNA/Proteins

Gene IDTranscript IDUniprot
ENSG00000157103ENST00000287766P30531
ENSG00000157103ENST00000287766A0A024R2G0
ENSG00000157103ENST00000425938C9J5P8
ENSG00000157103ENST00000460480A0A2R8YEF0
ENSG00000157103ENST00000642201P30531
ENSG00000157103ENST00000642201A0A024R2G0
ENSG00000157103ENST00000642515P30531
ENSG00000157103ENST00000642515A0A024R2G0
ENSG00000157103ENST00000642639P30531
ENSG00000157103ENST00000642639A0A024R2G0
ENSG00000157103ENST00000642735P30531
ENSG00000157103ENST00000642735A0A024R2G0
ENSG00000157103ENST00000642767P30531
ENSG00000157103ENST00000642767A0A024R2G0
ENSG00000157103ENST00000642820P30531
ENSG00000157103ENST00000642820A0A024R2G0
ENSG00000157103ENST00000643326A0A2R8YFI0
ENSG00000157103ENST00000643396P30531
ENSG00000157103ENST00000643396A0A024R2G0
ENSG00000157103ENST00000643498P30531
ENSG00000157103ENST00000643498A0A024R2G0
ENSG00000157103ENST00000644175A0A2R8Y495
ENSG00000157103ENST00000644314A0A2R8Y4I3
ENSG00000157103ENST00000644803A0A2R8YDD5
ENSG00000157103ENST00000645029P30531
ENSG00000157103ENST00000645029A0A024R2G0
ENSG00000157103ENST00000645054P30531
ENSG00000157103ENST00000645054A0A024R2G0
ENSG00000157103ENST00000645281B7Z3C5
ENSG00000157103ENST00000645575A0A2R8Y3X2
ENSG00000157103ENST00000645592P30531
ENSG00000157103ENST00000645592A0A024R2G0
ENSG00000157103ENST00000645776B7Z3C5
ENSG00000157103ENST00000645974P30531
ENSG00000157103ENST00000645974A0A024R2G0
ENSG00000157103ENST00000645985A0A2R8YF74
ENSG00000157103ENST00000646022P30531
ENSG00000157103ENST00000646022A0A024R2G0
ENSG00000157103ENST00000646060P30531
ENSG00000157103ENST00000646060A0A024R2G0
ENSG00000157103ENST00000646072B7Z3C5
ENSG00000157103ENST00000646088A0A2R8Y495
ENSG00000157103ENST00000646487A0A2R8Y867
ENSG00000157103ENST00000646570P30531
ENSG00000157103ENST00000646570A0A024R2G0
ENSG00000157103ENST00000646702P30531
ENSG00000157103ENST00000646702A0A024R2G0
ENSG00000157103ENST00000646924P30531
ENSG00000157103ENST00000646924A0A024R2G0
ENSG00000157103ENST00000647194P30531
ENSG00000157103ENST00000647194A0A024R2G0
ENSG00000157103ENST00000647384A0A2R8YCM3

Expression (GTEx)

0
50
100
150

Pathways

PathwaySourceExternal ID
GABAergic synapseKEGGko04727
GABAergic synapseKEGGhsa04727
Neuronal SystemREACTOMER-HSA-112316
Transmission across Chemical SynapsesREACTOMER-HSA-112315
Neurotransmitter Release CycleREACTOMER-HSA-112310
GABA synthesis, release, reuptake and degradationREACTOMER-HSA-888590
Reuptake of GABAREACTOMER-HSA-888593
Transmembrane transport of small moleculesREACTOMER-HSA-382551
SLC-mediated transmembrane transportREACTOMER-HSA-425407
Transport of glucose and other sugars, bile salts and organic acids, metal ions and amine compoundsREACTOMER-HSA-425366
Na+/Cl- dependent neurotransmitter transportersREACTOMER-HSA-442660

Protein levels (Protein atlas)

Not detected
Low
Medium
High

References

Pubmed IDYearTitleCitations
386631522024Beyond the Diagnosis: Evaluation of Quality-of-Life Measures and Family Functioning in SLC6A1-Related Neurodevelopmental Disorder.0
386631522024Beyond the Diagnosis: Evaluation of Quality-of-Life Measures and Family Functioning in SLC6A1-Related Neurodevelopmental Disorder.0
366744762023Experimental and Bioinformatic Insights into the Effects of Epileptogenic Variants on the Function and Trafficking of the GABA Transporter GAT-1.1
369475442023Ketone bodies promote stroke recovery via GAT-1-dependent cortical network remodeling.2
375016132023Patient-derived SLC6A1 variant S295L results in an epileptic phenotype similar to haploinsufficient mice.0
375409432023Assessing the impact of the de novo SLC6A1 mutation in schizophrenia through a comprehensive case study.0
376478522023SLC6A1 variant pathogenicity, molecular function and phenotype: a genetic and clinical analysis.1
366744762023Experimental and Bioinformatic Insights into the Effects of Epileptogenic Variants on the Function and Trafficking of the GABA Transporter GAT-1.1
369475442023Ketone bodies promote stroke recovery via GAT-1-dependent cortical network remodeling.2
375016132023Patient-derived SLC6A1 variant S295L results in an epileptic phenotype similar to haploinsufficient mice.0
375409432023Assessing the impact of the de novo SLC6A1 mutation in schizophrenia through a comprehensive case study.0
376478522023SLC6A1 variant pathogenicity, molecular function and phenotype: a genetic and clinical analysis.1
340066192022Neurodevelopmental phenotypes associated with pathogenic variants in SLC6A1.16
356764832022Structural basis of GABA reuptake inhibition.23
357417592022New Genetic Variants in CYP2B6 and SLC6A Support the Role of Oxidative Stress in Familial Ménière's Disease.4

Citation

Dessen P

SLC6A1 (solute carrier family 6 member 1)

Atlas Genet Cytogenet Oncol Haematol. 2013-01-01

Online version: http://atlasgeneticsoncology.org/gene/53134/slc6a1