SNRNP40 (small nuclear ribonucleoprotein U5 subunit 40)

2014-08-01  

Identity

HGNC
LOCATION
1p35.2
LOCUSID
ALIAS
40K,HPRP8BP,PRP8BP,PRPF8BP,SPF38,WDR57
FUSION GENES

Other Information

Locus ID:

NCBI: 9410
MIM: 607797
HGNC: 30857
Ensembl: ENSG00000060688

Variants:

dbSNP: 9410
ClinVar: 9410
TCGA: ENSG00000060688
COSMIC: SNRNP40

RNA/Proteins

Gene IDTranscript IDUniprot
ENSG00000060688ENST00000263694Q96DI7
ENSG00000060688ENST00000263694A0MNP2
ENSG00000060688ENST00000373720Q9NSS8

Expression (GTEx)

0
5
10
15
20
25
30
35
40

Pathways

PathwaySourceExternal ID
SpliceosomeKEGGko03040
SpliceosomeKEGGhsa03040
Spliceosome, 35S U5-snRNPKEGGhsa_M00355
Spliceosome, U4/U6.U5 tri-snRNPKEGGhsa_M00354
Spliceosome, U4/U6.U5 tri-snRNPKEGGM00354
Spliceosome, 35S U5-snRNPKEGGM00355
Gene ExpressionREACTOMER-HSA-74160
Processing of Capped Intron-Containing Pre-mRNAREACTOMER-HSA-72203
mRNA SplicingREACTOMER-HSA-72172
mRNA Splicing - Major PathwayREACTOMER-HSA-72163
mRNA Splicing - Minor PathwayREACTOMER-HSA-72165

Protein levels (Protein atlas)

Not detected
Low
Medium
High

References

Pubmed IDYearTitleCitations
370546262023Novel genetic variants linked to prelabor rupture of membranes among Chinese pregnant women.0
370546262023Novel genetic variants linked to prelabor rupture of membranes among Chinese pregnant women.0
271383362016Highly variable cancer subpopulations that exhibit enhanced transcriptome variability and metastatic fitness.67
271383362016Highly variable cancer subpopulations that exhibit enhanced transcriptome variability and metastatic fitness.67

Citation

Dessen P

SNRNP40 (small nuclear ribonucleoprotein U5 subunit 40)

Atlas Genet Cytogenet Oncol Haematol. 2014-08-01

Online version: http://atlasgeneticsoncology.org/gene/54648/gene-fusions/gene-fusions-explorer/js/lib/zoomerang.js