SOX2-OT (SOX2 overlapping transcript)

2014-08-01  

Identity

HGNC
SOX2-OT
LOCATION
3q26.33
LOCUSID
347689
ALIAS
NCRNA00043,SOX2OT
FUSION GENES
Show Gene Fusions

Other Information

Locus ID:

NCBI: 347689
MIM: 616338
HGNC: 20209
Ensembl: ENSG00000242808

Variants:

dbSNP: 347689
ClinVar: 347689
TCGA: ENSG00000242808
COSMIC: SOX2-OT

RNA/Proteins

Expression (GTEx)

0
50
100
150
Adipose - Subcutaneous
Adipose - Visceral
Adrenal Gland
Artery - Aorta
Artery - Tibial
Bladder
Brain - Amygdala
Brain - Anterior cingulate cortex
Brain - Caudate
Brain - Cerebellar Hemisphere
Brain - Cerebellum
Brain - Cortex
Brain - Frontal Cortex
Brain - Hippocampus
Brain - Hypothalamus
Brain - Nucleus accumbens
Brain - Putamen
Brain - Spinal cord
Brain - Substantia nigra
Breast - Mammary Tissue
Cells - Cultured fibroblasts
Cells - EBV - transformed lymphocytes
Cervix - Ectocervix
Cervix - Endocervix
Colon - Sigmoid
Colon - Transverse
Esophagus - Gastroesophageal Junction
Esophagus - Mucosa
Esophagus - Muscularis
Fallopian Tube
Heart - Atrial Appendage
Heart - Left Ventricle
Kidney - Cortex
Kidney - Medulla
Liver
Lung
Minor Salivary Gland
Muscle - Skeletal
Nerve - Tibial
Ovary
Pancreas
Pituitary
Prostate
Skin - Not Sun Exposed
Skin - Sun Exposed
Small Intestine - Terminal Ileum
Spleen
Stomach
Testis
Thyroid
Uterus
Vagina
Whole Blood

References

Pubmed IDYearTitleCitations
382939912024[LncRNA SOX2OT enhances 5-fluorouracil resistance of cholangiocarcinoma cells by promoting autophagy via up-regulating SIRT1 expression].0
386498212024Long non-coding RNA SOX2OT in tamoxifen-resistant breast cancer.0
382939912024[LncRNA SOX2OT enhances 5-fluorouracil resistance of cholangiocarcinoma cells by promoting autophagy via up-regulating SIRT1 expression].0
386498212024Long non-coding RNA SOX2OT in tamoxifen-resistant breast cancer.0
365761352023Forkhead box A2-mediated lncRNA SOX2OT up-regulation alleviates oxidative stress and apoptosis of renal tubular epithelial cells by promoting SIRT1 expression in diabetic nephropathy.2
369249852023Sox2ot /miR-9 /Cthrc1 Promote Proliferation and Migration of Schwann Cells Following Nerve Injury.0
370171972023Distinct gene expression patterns of SOX2 and SOX2OT variants in different types of brain tumours.0
377153862023Regulatory effect and mechanism of LncRNA SOX2OT in idiopathic pulmonary fibrosis.0
379044762023Association of lncRNA SOX2OT rs9839776 polymorphism with gastric cancer risk in Korean: Case-control study.0
365761352023Forkhead box A2-mediated lncRNA SOX2OT up-regulation alleviates oxidative stress and apoptosis of renal tubular epithelial cells by promoting SIRT1 expression in diabetic nephropathy.2
369249852023Sox2ot /miR-9 /Cthrc1 Promote Proliferation and Migration of Schwann Cells Following Nerve Injury.0
370171972023Distinct gene expression patterns of SOX2 and SOX2OT variants in different types of brain tumours.0
377153862023Regulatory effect and mechanism of LncRNA SOX2OT in idiopathic pulmonary fibrosis.0
379044762023Association of lncRNA SOX2OT rs9839776 polymorphism with gastric cancer risk in Korean: Case-control study.0
349973172022SOX2-OT induced by PAI-1 promotes triple-negative breast cancer cells metastasis by sponging miR-942-5p and activating PI3K/Akt signaling.15

Citation

Dessen P

SOX2-OT (SOX2 overlapping transcript)

Atlas Genet Cytogenet Oncol Haematol. 2014-08-01

Online version: http://atlasgeneticsoncology.org/gene/54656