CHST9 (carbohydrate sulfotransferase 9)

2016-10-01  

Identity

HGNC
LOCATION
18q11.2
LOCUSID
ALIAS
GALNAC4ST-2,GalNAc4ST2
FUSION GENES

Other Information

Locus ID:

NCBI: 83539
MIM: 610191
HGNC: 19898
Ensembl: ENSG00000154080

Variants:

dbSNP: 83539
ClinVar: 83539
TCGA: ENSG00000154080
COSMIC: CHST9

RNA/Proteins

Gene IDTranscript IDUniprot
ENSG00000154080ENST00000580774Q7L1S5
ENSG00000154080ENST00000581714Q7L1S5
ENSG00000154080ENST00000581714A0A024RC28
ENSG00000154080ENST00000618847Q7L1S5
ENSG00000154080ENST00000618847A0A024RC28

Expression (GTEx)

0
5
10
15

Pathways

PathwaySourceExternal ID
Metabolic pathwaysKEGGhsa01100
MetabolismREACTOMER-HSA-1430728
Metabolism of carbohydratesREACTOMER-HSA-71387
Glycosaminoglycan metabolismREACTOMER-HSA-1630316
Chondroitin sulfate/dermatan sulfate metabolismREACTOMER-HSA-1793185
Chondroitin sulfate biosynthesisREACTOMER-HSA-2022870

Protein levels (Protein atlas)

Not detected
Low
Medium
High

References

Pubmed IDYearTitleCitations
314817032019A Frameshift Variant in the CHST9 Gene Identified by Family-Based Whole Genome Sequencing Is Associated with Schizophrenia in Chinese Population.4
314817032019A Frameshift Variant in the CHST9 Gene Identified by Family-Based Whole Genome Sequencing Is Associated with Schizophrenia in Chinese Population.4
289242122017CHST9 rs1436904 genetic variant contributes to prognosis of triple-negative breast cancer.5
289242122017CHST9 rs1436904 genetic variant contributes to prognosis of triple-negative breast cancer.5
211562302010Examination of copy number variations of CHST9 in multiple types of hematologic malignancies.7
211562302010Examination of copy number variations of CHST9 in multiple types of hematologic malignancies.7

Citation

Dessen P

CHST9 (carbohydrate sulfotransferase 9)

Atlas Genet Cytogenet Oncol Haematol. 2016-10-01

Online version: http://atlasgeneticsoncology.org/gene/56223/favicon/js/lib/jquery-3.5.1.min.js