C6orf15 (chromosome 6 open reading frame 15)

2014-11-01  

Identity

HGNC
C6orf15
LOCATION
6p21.33
LOCUSID
29113
ALIAS
STG

Other Information

Locus ID:

NCBI: 29113
MIM: 611401
HGNC: 13927
Ensembl: ENSG00000204542

Variants:

dbSNP: 29113
ClinVar: 29113
TCGA: ENSG00000204542
COSMIC: C6orf15

RNA/Proteins

Gene IDTranscript IDUniprot
ENSG00000204542ENST00000259870Q6UXA7
ENSG00000204542ENST00000259870M1T2K5

Expression (GTEx)

0
1
2
3
4
5
6
7
8
9
10
Adipose - Subcutaneous
Adipose - Visceral
Adrenal Gland
Artery - Aorta
Artery - Tibial
Bladder
Brain - Amygdala
Brain - Anterior cingulate cortex
Brain - Caudate
Brain - Cerebellar Hemisphere
Brain - Cerebellum
Brain - Cortex
Brain - Frontal Cortex
Brain - Hippocampus
Brain - Hypothalamus
Brain - Nucleus accumbens
Brain - Putamen
Brain - Spinal cord
Brain - Substantia nigra
Breast - Mammary Tissue
Cells - Cultured fibroblasts
Cells - EBV - transformed lymphocytes
Cervix - Ectocervix
Cervix - Endocervix
Colon - Sigmoid
Colon - Transverse
Esophagus - Gastroesophageal Junction
Esophagus - Mucosa
Esophagus - Muscularis
Fallopian Tube
Heart - Atrial Appendage
Heart - Left Ventricle
Kidney - Cortex
Kidney - Medulla
Liver
Lung
Minor Salivary Gland
Muscle - Skeletal
Nerve - Tibial
Ovary
Pancreas
Pituitary
Prostate
Skin - Not Sun Exposed
Skin - Sun Exposed
Small Intestine - Terminal Ileum
Spleen
Stomach
Testis
Thyroid
Uterus
Vagina
Whole Blood

Protein levels (Protein atlas)

Not detected
Low
Medium
High
N/A

PharmGKB

Entity IDNameTypeEvidenceAssociationPKPDPMIDs
PA443622Carcinoma, Non-Small-Cell LungDiseaseClinicalAnnotationassociatedPD31616045
PA445846ThrombocytopeniaDiseaseClinicalAnnotationassociatedPD31616045
PA448803carboplatinChemicalClinicalAnnotationassociatedPD31616045
PA449748gemcitabineChemicalClinicalAnnotationassociatedPD31616045

References

Pubmed IDYearTitleCitations
385477622024Differential diagnosis of gastric low- and high grade dysplasia using C6orf15 protein.0
385477622024Differential diagnosis of gastric low- and high grade dysplasia using C6orf15 protein.0
370545772023C6orf15 acts as a potential novel marker of adverse pathological features and prognosis for colon cancer.4
370545772023C6orf15 acts as a potential novel marker of adverse pathological features and prognosis for colon cancer.4
196209802009Genetic variants at 6p21.33 are associated with susceptibility to follicular lymphoma.85
198514452009High-density SNP screening of the major histocompatibility complex in systemic lupus erythematosus demonstrates strong evidence for independent susceptibility regions.58
196209802009Genetic variants at 6p21.33 are associated with susceptibility to follicular lymphoma.85
198514452009High-density SNP screening of the major histocompatibility complex in systemic lupus erythematosus demonstrates strong evidence for independent susceptibility regions.58
152173612004STG does not associate with psoriasis in the Swedish population.3
152173612004STG does not associate with psoriasis in the Swedish population.3

Citation

Dessen P

C6orf15 (chromosome 6 open reading frame 15)

Atlas Genet Cytogenet Oncol Haematol. 2014-11-01

Online version: http://atlasgeneticsoncology.org/gene/61237/case-report-explorer/cancer-prone-explorer/meetings/