CDH9 (cadherin 9)

2014-11-01  

Identity

HGNC
CDH9
LOCATION
5p14.1
LOCUSID
1007
ALIAS
-

Other Information

Locus ID:

NCBI: 1007
MIM: 609974
HGNC: 1768
Ensembl: ENSG00000113100

Variants:

dbSNP: 1007
ClinVar: 1007
TCGA: ENSG00000113100
COSMIC: CDH9

RNA/Proteins

Gene IDTranscript IDUniprot
ENSG00000113100ENST00000231021Q9ULB4
ENSG00000113100ENST00000511822D6RBT9
ENSG00000113100ENST00000513289E7EPN0

Expression (GTEx)

0
1
2
3
4
5
6
7
Adipose - Subcutaneous
Adipose - Visceral
Adrenal Gland
Artery - Aorta
Artery - Tibial
Bladder
Brain - Amygdala
Brain - Anterior cingulate cortex
Brain - Caudate
Brain - Cerebellar Hemisphere
Brain - Cerebellum
Brain - Cortex
Brain - Frontal Cortex
Brain - Hippocampus
Brain - Hypothalamus
Brain - Nucleus accumbens
Brain - Putamen
Brain - Spinal cord
Brain - Substantia nigra
Breast - Mammary Tissue
Cells - Cultured fibroblasts
Cells - EBV - transformed lymphocytes
Cervix - Ectocervix
Cervix - Endocervix
Colon - Sigmoid
Colon - Transverse
Esophagus - Gastroesophageal Junction
Esophagus - Mucosa
Esophagus - Muscularis
Fallopian Tube
Heart - Atrial Appendage
Heart - Left Ventricle
Kidney - Cortex
Kidney - Medulla
Liver
Lung
Minor Salivary Gland
Muscle - Skeletal
Nerve - Tibial
Ovary
Pancreas
Pituitary
Prostate
Skin - Not Sun Exposed
Skin - Sun Exposed
Small Intestine - Terminal Ileum
Spleen
Stomach
Testis
Thyroid
Uterus
Vagina
Whole Blood

Pathways

PathwaySourceExternal ID
Cell-Cell communicationREACTOMER-HSA-1500931
Cell junction organizationREACTOMER-HSA-446728
Cell-cell junction organizationREACTOMER-HSA-421270
Adherens junctions interactionsREACTOMER-HSA-418990

Protein levels (Protein atlas)

Not detected
Low
Medium
High
cerebral cortex
cerebellum
hippocampus
caudate
thyroid gland
parathyroid gland
adrenal gland
nasopharynx
bronchus
lung
oral mucosa
salivary gland
esophagus
stomach 1
stomach 2
duodenum
small intestine
colon
rectum
liver
gallbladder
pancreas
kidney
urinary bladder
testis
epididymis
seminal vesicle
prostate
vagina
ovary
fallopian tube
endometrium 1
endometrium 2
cervix, uterine
placenta
breast
heart muscle
smooth muscle
skeletal muscle
soft tissue 1
soft tissue 2
adipose tissue
skin 1
skin 2
appendix
spleen
lymph node
tonsil
bone marrow

References

Pubmed IDYearTitleCitations
351000822022MiR-130b-3p promotes colorectal cancer progression by targeting CHD9.3
351000822022MiR-130b-3p promotes colorectal cancer progression by targeting CHD9.3
228469072012Analysis of four genes involved in the neurodevelopment shows association of rs4307059 polymorphism in the cadherin 9/10 region with completed suicide.5
228469072012Analysis of four genes involved in the neurodevelopment shows association of rs4307059 polymorphism in the cadherin 9/10 region with completed suicide.5
210796072011A genome-wide association study on common SNPs and rare CNVs in anorexia nervosa.81
210796072011A genome-wide association study on common SNPs and rare CNVs in anorexia nervosa.81
194042562009Common genetic variants on 5p14.1 associate with autism spectrum disorders.455
194042562009Common genetic variants on 5p14.1 associate with autism spectrum disorders.455
176680452007Cadherin-9 is a novel cell surface marker for the heterogeneous pool of renal fibroblasts.11
176680452007Cadherin-9 is a novel cell surface marker for the heterogeneous pool of renal fibroblasts.11

Citation

Dessen P

CDH9 (cadherin 9)

Atlas Genet Cytogenet Oncol Haematol. 2014-11-01

Online version: http://atlasgeneticsoncology.org/gene/61649/js/lib/jquery-3.5.1.min.js