GALNT16 (polypeptide N-acetylgalactosaminyltransferase 16)

2014-11-01  

Identity

HGNC
GALNT16
LOCATION
14q24.1
LOCUSID
57452
ALIAS
GALNACT16,GALNTL1,GalNAc-T16
FUSION GENES
Show Gene Fusions

Other Information

Locus ID:

NCBI: 57452
MIM: 615132
HGNC: 23233
Ensembl: ENSG00000100626

Variants:

dbSNP: 57452
ClinVar: 57452
TCGA: ENSG00000100626
COSMIC: GALNT16

RNA/Proteins

Gene IDTranscript IDUniprot
ENSG00000100626ENST00000337827Q8N428
ENSG00000100626ENST00000337827Q68VJ8
ENSG00000100626ENST00000448469Q8N428
ENSG00000100626ENST00000448469Q68VJ8
ENSG00000100626ENST00000553471Q8N428
ENSG00000100626ENST00000553669Q8N428

Expression (GTEx)

0
5
10
15
20
Adipose - Subcutaneous
Adipose - Visceral
Adrenal Gland
Artery - Aorta
Artery - Tibial
Bladder
Brain - Amygdala
Brain - Anterior cingulate cortex
Brain - Caudate
Brain - Cerebellar Hemisphere
Brain - Cerebellum
Brain - Cortex
Brain - Frontal Cortex
Brain - Hippocampus
Brain - Hypothalamus
Brain - Nucleus accumbens
Brain - Putamen
Brain - Spinal cord
Brain - Substantia nigra
Breast - Mammary Tissue
Cells - Cultured fibroblasts
Cells - EBV - transformed lymphocytes
Cervix - Ectocervix
Cervix - Endocervix
Colon - Sigmoid
Colon - Transverse
Esophagus - Gastroesophageal Junction
Esophagus - Mucosa
Esophagus - Muscularis
Fallopian Tube
Heart - Atrial Appendage
Heart - Left Ventricle
Kidney - Cortex
Kidney - Medulla
Liver
Lung
Minor Salivary Gland
Muscle - Skeletal
Nerve - Tibial
Ovary
Pancreas
Pituitary
Prostate
Skin - Not Sun Exposed
Skin - Sun Exposed
Small Intestine - Terminal Ileum
Spleen
Stomach
Testis
Thyroid
Uterus
Vagina
Whole Blood

Pathways

PathwaySourceExternal ID
Mucin type O-glycan biosynthesisKEGGko00512
Mucin type O-glycan biosynthesisKEGGhsa00512
Metabolic pathwaysKEGGhsa01100
O-glycan biosynthesis, mucin type coreKEGGhsa_M00056
O-glycan biosynthesis, mucin type coreKEGGM00056
Metabolism of proteinsREACTOMER-HSA-392499
Post-translational protein modificationREACTOMER-HSA-597592
O-linked glycosylationREACTOMER-HSA-5173105
O-linked glycosylation of mucinsREACTOMER-HSA-913709

Protein levels (Protein atlas)

Not detected
Low
Medium
High
cerebral cortex
cerebellum
hippocampus
caudate
thyroid gland
parathyroid gland
adrenal gland
nasopharynx
bronchus
lung
oral mucosa
salivary gland
esophagus
stomach 1
stomach 2
duodenum
small intestine
colon
rectum
liver
gallbladder
pancreas
kidney
urinary bladder
testis
epididymis
seminal vesicle
prostate
vagina
ovary
fallopian tube
endometrium 1
endometrium 2
cervix, uterine
placenta
breast
heart muscle
smooth muscle
skeletal muscle
soft tissue 1
soft tissue 2
adipose tissue
skin 1
skin 2
appendix
spleen
lymph node
tonsil
bone marrow

References

Pubmed IDYearTitleCitations
344526282021Circ-GALNT16 restrains colorectal cancer progression by enhancing the SUMOylation of hnRNPK.16
344526282021Circ-GALNT16 restrains colorectal cancer progression by enhancing the SUMOylation of hnRNPK.16
312866962019Evaluation of GALNT16 polymorphisms to breast cancer risk in Chinese population.6
312866962019Evaluation of GALNT16 polymorphisms to breast cancer risk in Chinese population.6
203796142010Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score.78
203796142010Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score.78

Citation

Dessen P

GALNT16 (polypeptide N-acetylgalactosaminyltransferase 16)

Atlas Genet Cytogenet Oncol Haematol. 2014-11-01

Online version: http://atlasgeneticsoncology.org/gene/63686/js/js/template.js