SLITRK5 (SLIT and NTRK like family member 5)

2014-11-01  

Identity

HGNC
SLITRK5
LOCATION
13q31.2
LOCUSID
26050
ALIAS
LRRC11,bA364G4.2

Other Information

Locus ID:

NCBI: 26050
MIM: 609680
HGNC: 20295
Ensembl: ENSG00000165300

Variants:

dbSNP: 26050
ClinVar: 26050
TCGA: ENSG00000165300
COSMIC: SLITRK5

RNA/Proteins

Gene IDTranscript IDUniprot
ENSG00000165300ENST00000325089O94991

Expression (GTEx)

0
1
2
3
4
5
6
7
8
9
10
Adipose - Subcutaneous
Adipose - Visceral
Adrenal Gland
Artery - Aorta
Artery - Tibial
Bladder
Brain - Amygdala
Brain - Anterior cingulate cortex
Brain - Caudate
Brain - Cerebellar Hemisphere
Brain - Cerebellum
Brain - Cortex
Brain - Frontal Cortex
Brain - Hippocampus
Brain - Hypothalamus
Brain - Nucleus accumbens
Brain - Putamen
Brain - Spinal cord
Brain - Substantia nigra
Breast - Mammary Tissue
Cells - Cultured fibroblasts
Cells - EBV - transformed lymphocytes
Cervix - Ectocervix
Cervix - Endocervix
Colon - Sigmoid
Colon - Transverse
Esophagus - Gastroesophageal Junction
Esophagus - Mucosa
Esophagus - Muscularis
Fallopian Tube
Heart - Atrial Appendage
Heart - Left Ventricle
Kidney - Cortex
Kidney - Medulla
Liver
Lung
Minor Salivary Gland
Muscle - Skeletal
Nerve - Tibial
Ovary
Pancreas
Pituitary
Prostate
Skin - Not Sun Exposed
Skin - Sun Exposed
Small Intestine - Terminal Ileum
Spleen
Stomach
Testis
Thyroid
Uterus
Vagina
Whole Blood

Protein levels (Protein atlas)

Not detected
Low
Medium
High
N/A

References

Pubmed IDYearTitleCitations
368111902023Upregulation of SLITRK5 in patients with epilepsy and in a rat model.0
368111902023Upregulation of SLITRK5 in patients with epilepsy and in a rat model.0
355791882022MUC21 controls melanoma progression via regulating SLITRK5 and hedgehog signaling pathway.2
358728462022The Role of SliTrk5 in Central Nervous System.1
355791882022MUC21 controls melanoma progression via regulating SLITRK5 and hedgehog signaling pathway.2
358728462022The Role of SliTrk5 in Central Nervous System.1
343263332021SLITRK5 is a negative regulator of hedgehog signaling in osteoblasts.19
343263332021SLITRK5 is a negative regulator of hedgehog signaling in osteoblasts.19
280859382017Rare Synaptogenesis-Impairing Mutations in SLITRK5 Are Associated with Obsessive Compulsive Disorder.13
280859382017Rare Synaptogenesis-Impairing Mutations in SLITRK5 Are Associated with Obsessive Compulsive Disorder.13
254267642015Association study of the SLITRK5 gene and Tourette syndrome.2
254267642015Association study of the SLITRK5 gene and Tourette syndrome.2

Citation

Dessen P

SLITRK5 (SLIT and NTRK like family member 5)

Atlas Genet Cytogenet Oncol Haematol. 2014-11-01

Online version: http://atlasgeneticsoncology.org/gene/73523