SYNGR3 (synaptogyrin 3)

2014-11-01  

Identity

HGNC
SYNGR3
LOCATION
16p13.3
LOCUSID
9143
ALIAS
-
FUSION GENES
Show Gene Fusions

Other Information

Locus ID:

NCBI: 9143
MIM: 603927
HGNC: 11501
Ensembl: ENSG00000127561

Variants:

dbSNP: 9143
ClinVar: 9143
TCGA: ENSG00000127561
COSMIC: SYNGR3

RNA/Proteins

Gene IDTranscript IDUniprot
ENSG00000127561ENST00000248121O43761
ENSG00000127561ENST00000562045H3BQ28
ENSG00000127561ENST00000563869H3BPJ5
ENSG00000127561ENST00000568896H3BNA6
ENSG00000127561ENST00000618464Q96L30

Expression (GTEx)

0
50
100
150
Adipose - Subcutaneous
Adipose - Visceral
Adrenal Gland
Artery - Aorta
Artery - Tibial
Bladder
Brain - Amygdala
Brain - Anterior cingulate cortex
Brain - Caudate
Brain - Cerebellar Hemisphere
Brain - Cerebellum
Brain - Cortex
Brain - Frontal Cortex
Brain - Hippocampus
Brain - Hypothalamus
Brain - Nucleus accumbens
Brain - Putamen
Brain - Spinal cord
Brain - Substantia nigra
Breast - Mammary Tissue
Cells - Cultured fibroblasts
Cells - EBV - transformed lymphocytes
Cervix - Ectocervix
Cervix - Endocervix
Colon - Sigmoid
Colon - Transverse
Esophagus - Gastroesophageal Junction
Esophagus - Mucosa
Esophagus - Muscularis
Fallopian Tube
Heart - Atrial Appendage
Heart - Left Ventricle
Kidney - Cortex
Kidney - Medulla
Liver
Lung
Minor Salivary Gland
Muscle - Skeletal
Nerve - Tibial
Ovary
Pancreas
Pituitary
Prostate
Skin - Not Sun Exposed
Skin - Sun Exposed
Small Intestine - Terminal Ileum
Spleen
Stomach
Testis
Thyroid
Uterus
Vagina
Whole Blood

Protein levels (Protein atlas)

Not detected
Low
Medium
High
cerebral cortex
cerebellum
hippocampus
caudate
thyroid gland
parathyroid gland
adrenal gland
nasopharynx
bronchus
lung
oral mucosa
salivary gland
esophagus
stomach 1
stomach 2
duodenum
small intestine
colon
rectum
liver
gallbladder
pancreas
kidney
urinary bladder
testis
epididymis
seminal vesicle
prostate
vagina
ovary
fallopian tube
endometrium 1
endometrium 2
cervix, uterine
placenta
breast
heart muscle
smooth muscle
skeletal muscle
soft tissue 1
soft tissue 2
adipose tissue
skin 1
skin 2
appendix
spleen
lymph node
tonsil
bone marrow

References

Pubmed IDYearTitleCitations
366249322023In vivo overexpression of synaptogyrin-3 promotes striatal synaptic dopamine uptake in LRRK2(R1441G)  mutant mouse model of Parkinson's disease.3
366249322023In vivo overexpression of synaptogyrin-3 promotes striatal synaptic dopamine uptake in LRRK2(R1441G)  mutant mouse model of Parkinson's disease.3
354090052022Transcriptional Regulation of the Synaptic Vesicle Protein Synaptogyrin-3 (SYNGR3) Gene: The Effects of NURR1 on Its Expression.5
361483992022Tumor Cell Extrinsic Synaptogyrin 3 Expression as a Diagnostic and Prognostic Biomarker in Head and Neck Cancer.1
354090052022Transcriptional Regulation of the Synaptic Vesicle Protein Synaptogyrin-3 (SYNGR3) Gene: The Effects of NURR1 on Its Expression.5
361483992022Tumor Cell Extrinsic Synaptogyrin 3 Expression as a Diagnostic and Prognostic Biomarker in Head and Neck Cancer.1
193572842009Physical and functional interaction between the dopamine transporter and the synaptic vesicle protein synaptogyrin-3.73
193572842009Physical and functional interaction between the dopamine transporter and the synaptic vesicle protein synaptogyrin-3.73
147555162004Characterization of synaptogyrin 3 as a new synaptic vesicle protein.21
147555162004Characterization of synaptogyrin 3 as a new synaptic vesicle protein.21

Citation

Dessen P

SYNGR3 (synaptogyrin 3)

Atlas Genet Cytogenet Oncol Haematol. 2014-11-01

Online version: http://atlasgeneticsoncology.org/gene/74417