TCGA Program

cBioPortalSigleProgramoriginPublicationBroad GDAC
paac_jhu_2014PAAC Acinar Cell Carcinoma of the Pancreas Acinar Cell Carcinoma of the Pancreas (Johns Hopkins, J Pathol 2014) Jial et al. J Pathol 2014  
laml_tcga_pubLAML Acute Myeloid Leukemia Acute Myeloid Leukemia (TCGA, NEJM 2013) TCGA, NEJM 2013 LAML [cohort] [report]
laml_tcgaLAML Acute Myeloid Leukemia Acute Myeloid Leukemia (TCGA, Provisional) LAML [cohort] [report]
acyc_fmi_2014ACYC Adenoid Cystic Carcinoma Adenoid Cystic Carcinoma (FMI, Am J Surg Pathl. 2014) Ross et al. Am J Surg Pathl. 2014  
acyc_mda_2015ACYC Adenoid Cystic Carcinoma Adenoid Cystic Carcinoma (MDA, Clin Cancer Res 2015) Mitani et al. Clin Cancer Res. 2015  
acyc_mskcc_2013ACYC Adenoid Cystic Carcinoma Adenoid Cystic Carcinoma (MSKCC, Nat Genet 2013) Ho et al. Nat Genet 2013  
acyc_sanger_2013ACYC Adenoid Cystic Carcinoma Adenoid Cystic Carcinoma (Sanger/MDA, JCI 2013) Stephens et al. JCI 2013  
acbc_mskcc_2015ACBC Adenoid Cystic Carcinoma of the Breast Adenoid Cystic Carcinoma of the Breast (MSKCC, J Pathol. 2015) Martelotto et al. J Pathol. 2015  
acc_tcgaACC Adrenocortical Carcinoma Adrenocortical Carcinoma (TCGA, Provisional) ACC [cohort] [report]
blca_mskcc_solit_2014BLCA Bladder Cancer Bladder Cancer (MSKCC, Eur Urol 2014) Kim et al. Eur Urol 2015 BLCA [cohort] [report]
blca_mskcc_solit_2012BLCA Bladder Cancer Bladder Cancer (MSKCC, JCO 2013) Iyer et al. JCO 2013 BLCA [cohort] [report]
blca_plasmacytoid_mskcc_2016BLCA Bladder Cancer, Plasmacytoid Variant Bladder Cancer, Plasmacytoid Variant (MSKCC, Nat Genet 2016) BLCA [cohort] [report]
blca_bgiBLCA Bladder Urothelial Carcinoma Bladder Urothelial Carcinoma (BGI, Nat Genet 2013) Guo et al. Nat Genet 2012 BLCA [cohort] [report]
blca_dfarber_mskcc_2014BLCA Bladder Urothelial Carcinoma Bladder Urothelial Carcinoma (Dana Farber & MSKCC, Cancer Discov 2014) Van Allen et al.,Cancer Discov 2014 BLCA [cohort] [report]
blca_tcga_pubBLCA Bladder Urothelial Carcinoma Bladder Urothelial Carcinoma (TCGA, Nature 2014) TCGA, Nature 2014 BLCA [cohort] [report]
blca_tcgaBLCA Bladder Urothelial Carcinoma Bladder Urothelial Carcinoma (TCGA, Provisional) BLCA [cohort] [report]
lgg_tcgaLGG Brain Lower Grade Glioma Brain Lower Grade Glioma (TCGA, Provisional) LGG [cohort] [report]
brca_metabricBRCA Breast Cancer Breast Cancer (METABRIC, Nature 2012 & Nat Commun 2016) Pereira et al. Nat Commun 2016 BRCA [cohort] [report]
brca_bccrcBRCA Breast Invasive Carcinoma Breast Invasive Carcinoma (British Columbia, Nature 2012) Shah et al. Nature 2012 BRCA [cohort] [report]
brca_broadBRCA Breast Invasive Carcinoma Breast Invasive Carcinoma (Broad, Nature 2012) Banerji et al. Nature 2012 BRCA [cohort] [report]
brca_sangerBRCA Breast Invasive Carcinoma Breast Invasive Carcinoma (Sanger, Nature 2012) Stephens et al. Nature 2012 BRCA [cohort] [report]
brca_tcga_pub2015BRCA Breast Invasive Carcinoma Breast Invasive Carcinoma (TCGA, Cell 2015) TCGA, Cell 2015 BRCA [cohort] [report]
brca_tcga_pubBRCA Breast Invasive Carcinoma Breast Invasive Carcinoma (TCGA, Nature 2012) TCGA, Nature 2012 BRCA [cohort] [report]
brca_tcgaBRCA Breast Invasive Carcinoma Breast Invasive Carcinoma (TCGA, Provisional) BRCA [cohort] [report]
brca_bccrc_xenograft_2014BRCA Breast cancer patient xenografts Breast cancer patient xenografts (British Columbia, Nature 2014) Eirew et al. Nature 2014 BRCA [cohort] [report]
cellline_ccle_broadCELLLINE Cancer Cell Line Encyclopedia Cancer Cell Line Encyclopedia (Novartis/Broad, Nature 2012) Barretina et al. Nature 2012  
cesc_tcgaCESC Cervical Squamous Cell Carcinoma and Endocervical Adenocarcinoma Cervical Squamous Cell Carcinoma and Endocervical Adenocarcinoma (TCGA, Provisional) CESC [cohort] [report]
chol_nccs_2013CHOL Cholangiocarcinoma Cholangiocarcinoma (National Cancer Centre of Singapore, Nat Genet 2013) Chan-on et al. Nat Genet 2013 CHOL [cohort] [report]
chol_nus_2012CHOL Cholangiocarcinoma Cholangiocarcinoma (National University of Singapore, Nat Genet 2012) Ong et al. Nat Genet 2012 CHOL [cohort] [report]
chol_tcgaCHOL Cholangiocarcinoma Cholangiocarcinoma (TCGA, Provisional) CHOL [cohort] [report]
lcll_broad_2013LCLL Chronic Lymphocytic Leukemia Chronic Lymphocytic Leukemia (Broad, Cell 2013) Landau et al. Cell 2013  
cll_iuopa_2015CLL Chronic Lymphocytic Leukemia Chronic Lymphocytic Leukemia (IUOPA, Nature 2015) Puente et al. Nature 2015  
ccrcc_utokyo_2013CCRCC Clear Cell Renal Cell Carcinoma Clear Cell Renal Cell Carcinoma (U Tokyo, Nat Genet 2013) Sato et al. Nat Genet 2013  
coadread_dfci_2016COADREAD Colorectal Adenocarcinoma Colorectal Adenocarcinoma (DFCI, Cell Reports 2016) Giannakis et al. Cell Reports 2016 COADREAD [cohort] [report]
coadread_genentechCOADREAD Colorectal Adenocarcinoma Colorectal Adenocarcinoma (Genentech, Nature 2012) Seshagiri et al. Nature 2012 COADREAD [cohort] [report]
coadread_tcga_pubCOADREAD Colorectal Adenocarcinoma Colorectal Adenocarcinoma (TCGA, Nature 2012) TCGA, Nature 2012 COADREAD [cohort] [report]
coadread_tcgaCOADREAD Colorectal Adenocarcinoma Colorectal Adenocarcinoma (TCGA, Provisional) COADREAD [cohort] [report]
coadread_mskccCOADREAD Colorectal Adenocarcinoma Triplets Colorectal Adenocarcinoma Triplets (MSKCC, Genome Biol 2014) Brannon et al. Genome Biol 2014 COADREAD [cohort] [report]
ctcl_columbia_2015CTCL Cutaneous T Cell Lymphoma Cutaneous T Cell Lymphoma (Columbia U, Nat Genet 2015) Da Silva Almeida et al. Nat Genet 2015  
cscc_dfarber_2015CSCC Cutaneous squamous cell carcinoma Cutaneous squamous cell carcinoma (DFCI, Clin Cancer Res 2015) Li et al, Clin Cancer Res 2015  
desm_broad_2015DESM Desmoplastic Melanoma Desmoplastic Melanoma (Broad Institute, Nat Genet 2015) Shain et al. Nat Genet 2015  
dlbc_broad_2012DLBC Diffuse Large B-Cell Lymphoma Diffuse Large B-Cell Lymphoma (Broad, PNAS 2012) Lohr et al., PNAS 2012 DLBC [cohort] [report]
esca_broadESCA Esophageal Adenocarcinoma Esophageal Adenocarcinoma (Broad, Nat Genet 2013) Dulak et al. Nat Genet 2013 ESCA [cohort] [report]
esca_tcgaESCA Esophageal Carcinoma Esophageal Carcinoma (TCGA, Provisional) ESCA [cohort] [report]
escc_icgcESCC Esophageal Squamous Cell Carcinoma Esophageal Squamous Cell Carcinoma (ICGC, Nature 2014) Song et al. Nature 2014  
escc_ucla_2014ESCC Esophageal Squamous Cell Carcinoma Esophageal Squamous Cell Carcinoma (UCLA, Nat Genet 2014) Lin et al., Nat Genet 2014  
es_iocurie_2014ES Ewing Sarcoma Ewing Sarcoma (Institut Cuire, Cancer Discov 2014) Tirode et al. Cancer Discov. 2014  
gbc_shanghai_2014GBC Gallbladder Carcinoma Gallbladder Carcinoma (Shanghai, Nat Genet 2014) Maolan Li et al, Nat Genet 2014  
egc_tmucih_2015EGC Gastric Adenocarcinoma Gastric Adenocarcinoma (TMUCIH, PNAS 2015) Chen et al. PNAS 2015  
prad_cpcg_2017PRAD Genomic Hallmarks of Prostate Adenocarcinoma Genomic Hallmarks of Prostate Adenocarcinoma (CPC-GENE, Nature 2017) Fraser et al. Nature 2017 PRAD [cohort] [report]
gbm_tcga_pub2013GBM Glioblastoma Glioblastoma (TCGA, Cell 2013) TCGA, Cell 2013 GBM [cohort] [report]
gbm_tcga_pubGBM Glioblastoma Glioblastoma (TCGA, Nature 2008) TCGA, Nature 2008 GBM [cohort] [report]
gbm_tcgaGBM Glioblastoma Multiforme Glioblastoma Multiforme (TCGA, Provisional) GBM [cohort] [report]
hnsc_broadHNSC Head and Neck Squamous Cell Carcinoma Head and Neck Squamous Cell Carcinoma (Broad, Science 2011) Stransky et al. Science 2011 HNSC [cohort] [report]
hnsc_jhuHNSC Head and Neck Squamous Cell Carcinoma Head and Neck Squamous Cell Carcinoma (Johns Hopkins, Science 2011) Agrawal et al. Science 2011 HNSC [cohort] [report]
hnsc_tcga_pubHNSC Head and Neck Squamous Cell Carcinoma Head and Neck Squamous Cell Carcinoma (TCGA, Nature 2015) TCGA, Nature 2015 HNSC [cohort] [report]
hnsc_tcgaHNSC Head and Neck Squamous Cell Carcinoma Head and Neck Squamous Cell Carcinoma (TCGA, Provisional) HNSC [cohort] [report]
liad_inserm_fr_2014LIAD Hepatocellular Adenoma Hepatocellular Adenoma (Inserm, Cancer Cell 2014)  
all_stjude_2013ALL Hypodiploid Acute Lymphoid Leukemia Hypodiploid Acute Lymphoid Leukemia (St Jude, Nat Genet 2013) Holmfeldt et al. Nat Genet 2013  
all_stjude_2015ALL Infant MLL-Rearranged Acute Lymphoblastic Leukemia Infant MLL-Rearranged Acute Lymphoblastic Leukemia (St Jude, Nat Genet 2015) Andersson et al. Nat Genet 2015  
panet_shanghai_2013PANET Insulinoma Insulinoma (Shanghai, Nat Commun 2013) Cao et al. Nat Commun 2013  
chol_jhu_2013CHOL Intrahepatic Cholangiocarcinoma Intrahepatic Cholangiocarcinoma (Johns Hopkins University, Nat Genet 2013) Jiao et al. Nat Genet 2013 CHOL [cohort] [report]
kich_tcga_pubKICH Kidney Chromophobe Kidney Chromophobe (TCGA, Cancer Cell 2014) TCGA, Cancer Cell 2014 KICH [cohort] [report]
kich_tcgaKICH Kidney Chromophobe Kidney Chromophobe (TCGA, Provisional) KICH [cohort] [report]
kirc_bgiKIRC Kidney Renal Clear Cell Carcinoma Kidney Renal Clear Cell Carcinoma (BGI, Nat Genet 2012) Guo et al. Nat Genet 2012 KIRC [cohort] [report]
kirc_tcga_pubKIRC Kidney Renal Clear Cell Carcinoma Kidney Renal Clear Cell Carcinoma (TCGA, Nature 2013) TCGA, Nature 2013 KIRC [cohort] [report]
kirc_tcgaKIRC Kidney Renal Clear Cell Carcinoma Kidney Renal Clear Cell Carcinoma (TCGA, Provisional) KIRC [cohort] [report]
kirp_tcgaKIRP Kidney Renal Papillary Cell Carcinoma Kidney Renal Papillary Cell Carcinoma (TCGA, Provisional) KIRP [cohort] [report]
lihc_amc_prvLIHC Liver Hepatocellular Carcinoma Liver Hepatocellular Carcinoma (AMC, Hepatology 2014) Ahn et al. Hepatology 2014 LIHC [cohort] [report]
lihc_rikenLIHC Liver Hepatocellular Carcinoma Liver Hepatocellular Carcinoma (RIKEN, Nat Genet 2012) Fujimoto et al. Nat Genet 2012 LIHC [cohort] [report]
lihc_tcgaLIHC Liver Hepatocellular Carcinoma Liver Hepatocellular Carcinoma (TCGA, Provisional) LIHC [cohort] [report]
lgg_ucsf_2014LGG Low-Grade Gliomas Low-Grade Gliomas (UCSF, Science 2014) Johnson BE et al, Science 2014 LGG [cohort] [report]
luad_broadLUAD Lung Adenocarcinoma Lung Adenocarcinoma (Broad, Cell 2012) Imielinksi et al. Cell 2012 LUAD [cohort] [report]
luad_mskcc_2015LUAD Lung Adenocarcinoma Lung Adenocarcinoma (MSKCC 2015) Rizvi et al., Science 2015 LUAD [cohort] [report]
luad_tcga_pubLUAD Lung Adenocarcinoma Lung Adenocarcinoma (TCGA, Nature 2014) TCGA, Nature 2014 LUAD [cohort]