Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

BCL2L12 (BCL2-like 12 (proline-rich))

Identity

Other namesBPR
MGC120313
MGC120314
MGC120315
HGNC (Hugo) BCL2L12
LocusID (NCBI) 83596
Location 19q13.3
Location_base_pair Starts at 50168399 and ends at 50177173 bp from pter ( according to hg19-Feb_2009)  [Mapping]
Local_order Telomere to centromere.

DNA/RNA

Description Spanning 8.8 kb of genomic DNA, the BCL2L12 gene consists of 6 introns and 7 exons.
Transcription The BCL2L12 gene has three splice variants with differences in exon 3. The predominant form is 1855 bp and encodes the full-length protein. The second splice variant lacks exon 3, which consists of 143 bp, thus resulting in no ORF. The third splice variant lacks 3 bp at the beginning of exon 3 and encodes a protein having one amino acid residue less than the full-lengh protein.
Pseudogene Not identified so far.

Protein

Description The BCL2L12 protein is composed of 334 amino acids, with a calculated molecular mass of 36.8 kDa and an isoelectric point of 9.45. The BCL2L12 protein contains one BH2 and one putative BH3 domain, one proline-rich region similar to the TC21 protein, and five consensus PXXP tetrapeptide sequences.
BCL2L12 protein also includes various putative posttranslational modification sites. There are numerous potential sites for O-glycosylation. Furthermore, several possible sites of phosphorylation have been identified for cAMP-dependent protein kinase, protein kinase C, and casein kinase 2. In addition, several N-myristoylation sites have been predicted. The BCL2L12 protein was found to have proline-rich sites. One PPPP site as well as five PP amino acid sites are present in this protein. Eight putative PXXP motifs were also identified. Proline-rich motifs are characterized by the presence of the consensus PXXP tetrapeptide, found in all proline-rich proteins identified to date. It is known that SH3 domains recognize proline-rich sequences and that all known SH3-binding proteins contain proline-rich regions with at least one PXXP motif. Proline-rich domains have been identified in a number of diverse proteins such as epidermal growth factors, phosphatidylinositol 3-kinase, and, more recently, the small GTPase RRAS protein and members of the RRAS superfamily such as the TC21 protein. Moreover, the amino acid loop (PPSPEP) at positions 271-276 of the BCL2L12 protein is identical with the PXXP motif present in the RRAS and TC21 oncogenes. This motif is required for integrin activation.
The splice variant BCL2L12-A is expected to encode a truncated protein of 176 amino acids with five PP proline sites, two putative PXXP motifs, and no BH2 homology domain.
Expression High levels of BCL2L12 expression are typically found in glandular epithelia in various organs, such as gastrointestinal tract and/or breast. Lower BCL2L12 protein expression has been found in prostate tissue.
Function BCL2L12 is involved in apoptosis. However, its proapoptotic or antiapoptotic role in different types of cells and conditions remains unclear.
Homology Human BCL2L12 shares 98% and 96% identity with chimpanzee and Rhesus monkey Bcl2l12, respectively, and 83% identity with rat/mouse Bc2l12 as well.

Mutations

Note No germinal or somatic mutations are identified to be associated with cancer so far.

Implicated in

Entity Human Leukemias, Solid Tumors.
Note Significant alterations of BCL2L12 mRNA expression have been noticed in HL-60 leukemia cells as well as in MCF7 breast cancer cells, after treatment with various antineoplastic agents including cisplatin, carboplatin, doxorubicin, methotrexate, and etoposide. These important modulations of BCL2L12 mRNA levels seem to depend on both the apoptotic inducer and the specific apoptotic pathway, implying a strong relationship between alterations in BCL2L12 mRNA levels and apoptosis.
Expression analysis of the BCL2L12 gene has showed that BCL2L12 mRNA expression may be considered as a new prognostic marker for breast cancer, as breast tumours of lower stage or grade are more often BCL2L12-positive. Moreover, breast cancer patients with BCL2L12 mRNA expression are less likely to relapse or die, in comparison with BCL2L12-negative patients. Regarding BCL2L12 gene expression in colon cancer, the BCL2L12-A transcript is overexpressed in cancer tissues as compared to their normal mucosa counterparts. BCL2L12-A mRNA expression is also associated with colon cancer progression, since it is usually greater in patients being at the initial stages of the disease or having negative nodal status. BCL2L12 were found also to inhibits post-mitochondrial apoptosis signaling in glioblastoma.
Cytogenetics No cytogenetic abnormalities are identified so far.
Hybrid/Mutated Gene Not identified so far.
  

External links

Nomenclature
HGNC (Hugo)BCL2L12   13787
Entrez_Gene (NCBI)BCL2L12  83596  BCL2-like 12 (proline rich)
Cards
AtlasBCL2L12ID773ch19q13
GeneCards (Weizmann)BCL2L12
Ensembl (Hinxton)ENSG00000126453 [Gene_View]  chr19:50168399-50177173 [Contig_View]  BCL2L12 [Vega]
AceView (NCBI)BCL2L12
Genatlas (Paris)BCL2L12
euGene (Indiana)83596
SOURCE (Stanford)NM_001040668 NM_052842 NM_138639
Genomic and cartography
GoldenPath (UCSC)BCL2L12  -  19q13.3   chr19:50168399-50177173 +  19q13.3   [Description]    (hg19-Feb_2009)
EnsemblBCL2L12 - 19q13.3 [CytoView]
Mapping of homologs : NCBIBCL2L12 [Mapview]
OMIM610837   
Gene and transcription
Genbank (Entrez)BC007724 BC104004 BC104005 BC104006
RefSeq transcript (SRS)NM_001040668 NM_052842 NM_138639
RefSeq transcript (Entrez)NM_001040668 NM_052842 NM_138639
RefSeq genomic (SRS)AC_000151 NC_000019 NT_011109 NW_001838497
RefSeq genomic (Entrez)AC_000151 NC_000019 NT_011109 NW_001838497
Consensus coding sequences : CCDS (NCBI)BCL2L12
Cluster EST : UnigeneHs.289052 [ SRS ] Hs.289052 [ NCBI ]
Alternative Splicing : Fast-db (Paris)14338
Alternative Splicing GalleryENSG00000126453
Gene ExpressionBCL2L12 [ NCBI-GEO ]   BCL2L12 [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9HB09 (SRS) Q9HB09 (Uniprot)
With graphics : InterProQ9HB09
Splice isoforms : SwissVarQ9HB09(Swissvar)
Domaine pattern : Prosite (SRS)BH2 (PS01258)   
Domaine pattern : Prosite (Expaxy)BH2 (PS01258)   
Related proteins : CluSTrQ9HB09
Domain families : Pfam (SRS)
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Blocks (Seattle)Q9HB09
Human Protein AtlasENSG00000126453
HPRD16543
IPIIPI00019835   IPI00216001   IPI00759647   
Protein Interaction databases
DIP (DOE-UCLA)Q9HB09
IntAct (EBI)Q9HB09
FunCoupENSG00000126453
REACTOMEBCL2L12
BioGRIDBCL2L12
InParanoidQ9HB09
Interologous Interaction database Q9HB09
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)BCL2L12
SNP (GeneSNP Utah)BCL2L12
SNP : HGBaseBCL2L12
Genetic variants : HAPMAPBCL2L12
Somatic Mutations in Cancer : COSMICBCL2L12 
CONAN: Copy Number AnalysisBCL2L12 
Mutations and Diseases : HGMDBCL2L12
OMIM610837   
GENETests610837   
Disease Genetic AssociationBCL2L12
Huge Navigator BCL2L12 [HugePedia]  BCL2L12 [HugeCancerGEM]
Genomic VariantsBCL2L12
snp3D : Map Gene to Disease83596
General knowledge
Homologs : HomoloGeneBCL2L12
Homology/Alignments : Family Browser (UCSC)BCL2L12
Phylogenetic Trees/Animal Genes : TreeFamBCL2L12
Chemical/Protein Interactions : CTD83596
Chemical/Pharm GKB GenePA25306
Clinical trialBCL2L12
Cancer Resource (Charite)ENSG00000126453
Ontology : AmiGOapoptotic process  
Ontology : EGO-EBIapoptotic process  
Other databases
Probes
Probes : ImagenesBCL2L12 Related clones (RZPD - Berlin)
Litterature
PubMed24 Pubmed reference(s) in Entrez
PubGeneBCL2L12
iHOPBCL2L12

Bibliography

Molecular cloning, physical mapping, and expression analysis of a novel gene, BCL2L12, encoding a proline-rich protein with a highly conserved BH2 domain of the Bcl-2 family.
Scorilas A, Kyriakopoulou L, Yousef GM, Ashworth LK, Kwamie A, Diamandis EP.
Genomics 2001; 72: 217-221.
PMID 11401436
 
Cisplatin-induced apoptosis in HL-60 human promyelocytic leukemia cells: differential expression of BCL2 and novel apoptosis-related gene BCL2L12.
Floros KV, Thomadaki H, Lallas G, Katsaros N, Talieri M, Scorilas A.
Ann N Y Acad Sci 2003; 1010: 153-158.
PMID 15033711
 
Expression of BCL2L12, a new member of apoptosis-related genes, in breast tumors.
Talieri M, Diamandis EP, Katsaros N, Gourgiotis D, Scorilas A.
Thromb Haemost 2003; 89: 1081-1088.
PMID 12783122
 
mRNA expression analysis of a variety of apoptosis-related genes, including the novel gene of the BCL2-family, BCL2L12, in HL-60 leukemia cells after treatment with carboplatin and doxorubicin.
Floros KV, Thomadaki H, Katsaros N, Talieri M, Scorilas A.
Biol Chem 2004; 385: 1099-1103.
PMID 15576332
 
Expression analysis of BCL2L12, a new member of apoptosis-related genes, in colon cancer.
Mathioudaki K, Scorilas A, Papadokostopoulou A, Xynopoulos D, Arnogianaki N, Agnanti N, Talieri M.
Biol Chem 2004; 385: 779-783.
PMID 15493871
 
Topotecan and methotrexate alter expression of the apoptosis-related genes BCL2, FAS and BCL2L12 in leukemic HL-60 cells.
Floros KV, Talieri M, Scorilas A.
Biol Chem 2006; 387: 1629-1633.
PMID 17132110
 
Alterations in mRNA expression of apoptosis-related genes BCL2, BAX, FAS, caspase-3, and the novel member BCL2L12 after treatment of human leukemic cell line HL60 with the antineoplastic agent etoposide.
Floros KV, Thomadaki H, Florou D, Talieri M, Scorilas A.
Ann N Y Acad Sci 2006; 1090: 89-97.
PMID 17384250
 
BCL2 family of apoptosis-related genes: functions and clinical implications in cancer.
Thomadaki H, Scorilas A.
Crit Rev Clin Lab Sci 2006; 43: 1-67. (REVIEW)
PMID 16531274
 
Treatment of MCF-7 cells with taxol and etoposide induces distinct alterations in the expression of apoptosis-related genes BCL2, BCL2L12, BAX, CASPASE-9 and FAS.
Thomadaki H, Talieri M, Scorilas A.
Biol Chem 2006; 387: 1081-1086.
PMID 16895478
 
BCL2L12 inhibits post-mitochondrial apoptosis signaling in glioblastoma.
Stegh AH, Kim H, Bachoo RM, Forloney KL, Zhang J, Schulze H, Park K, Hannon GJ, Yuan J, Louis DN, DePinho RA, Chin L.
Genes Dev. 2007 Jan 1;21(1):98-111.
PMID 17210792
 
Breast cancer cells response to the antineoplastic agent's cisplatin, carboplatin, and doxorubicin at the mRNA expression levels of distinct apoptosis-related genes, including the new member, BCL2L12.
Thomadaki H, Scorilas A.
Ann N Y Acad Sci 2007; 1095: 35-44.
PMID 17404015
 
Prognostic value of the apoptosis related genes BCL2 and BCL2L12 in breast cancer.
Thomadaki H, Talieri M, Scorilas A.
Cancer Lett 2007; 247: 48-55.
PMID 16647810
 
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written08-2008Christos Kontos, Hellinida Thomadaki, Andreas Scorilas
Department of Biochemistry and Molecular Biology, Faculty of Biology, University of Athens. 157 01, Panepistimiopolis, Athens, Greece

Citation

This paper should be referenced as such :
Kontos C, Thomadaki H, Scorilas A . BCL2L12 (BCL2-like 12 (proline-rich)). Atlas Genet Cytogenet Oncol Haematol. August 2008 .
URL : http://AtlasGeneticsOncology.org/Genes/BCL2L12ID773ch19q13.html

This paper is referenced by INIST as such :
http://documents.irevues.inist.fr/bitstream/2042/44508/1/08-2008-BCL2L12ID773ch19q13.pdf   [ Bibliographic record ]

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Apr 28 15:11:22 CEST 2012

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.