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DYRK1B (dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1B)

Identity

Other namesMIRK
HGNC DYRK1B
Location 19q13.2
Location_base_pair Starts at 45007830 and ends at 45016681 bp from pter ( according to hg18-Mar_2006).

DNA/RNA

Description 11 exons and 10 introns encompassing 8.8kb.
Transcription Start at exon 1 encodes major active form p69, with alternative splicing in exon 9 giving rise to kinase inactive p62, and with alternative splicing within intron 1-2 giving rise to p75 in skeletal muscle.
Pseudogene None reported

Protein

Note Serine/threonine kinase activated by intramolecular phosphorylation on tyrosine.
Description 629 amino acids.
Expression Widely expressed at low levels, with elevated expression in muscle and testis.
Function Mediates myoblast differentiation.

Mutations

Note None in SW480 colon cancer cells, none reported.

Implicated in

Entity Ductal adenocarcinoma of the pancreas
Note Active kinase in pancreatic cancer cell lines.
Disease Present in 89% of cases by immunocytochemistry (25 of 28 cases)
Cytogenetics 19q13 amplicon in 10% of cases
Hybrid/Mutated Gene None reported
Abnormal Protein None reported
Oncogenesis Embryonic knockout is viable and has no reported phenotype
  
Entity Rhabdomyosarcoma
Note Overexpressed in 12 of 16 cases; active kinase in rhabdomyosarcoma cell lines
  

Breakpoints

Note None reported

External links

Nomenclature
HGNCDYRK1B   3092
Entrez_GeneDYRK1B  9149  dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1B
Cards
AtlasDYRK1BID43235ch19q13
GeneCardsDYRK1B
EnsemblENSG00000105204 [Gene_View]  DYRK1B [Vega]
GenatlasDYRK1B
Genomic and cartography
GoldenPathDYRK1B  -  19q13.2   chr19:45007830-45016681 -  19q12-q13.1   [Description]    (hg18-Mar_2006)
EnsemblDYRK1B - 19q12-q13.1 [CytoView]
NCBIMapview
OMIM604556 Disease map [OMIM]
HomoloGeneDYRK1B
Gene and transcription
GenbankAF205861 [ ENTREZ ]
GenbankAK074971 [ ENTREZ ]
GenbankBC009688 [ ENTREZ ]
GenbankBC018751 [ ENTREZ ]
GenbankBC025291 [ ENTREZ ]
RefSeqNM_004714 [ SRS ]    NM_004714 [ ENTREZ ]
RefSeqNM_006483 [ SRS ]    NM_006483 [ ENTREZ ]
RefSeqNM_006484 [ SRS ]    NM_006484 [ ENTREZ ]
RefSeqAC_000062 [ SRS ]    AC_000062 [ ENTREZ ]
RefSeqAC_000151 [ SRS ]    AC_000151 [ ENTREZ ]
RefSeqNC_000019 [ SRS ]    NC_000019 [ ENTREZ ]
RefSeqNT_011109 [ SRS ]    NT_011109 [ ENTREZ ]
RefSeqNW_001838496 [ SRS ]    NW_001838496 [ ENTREZ ]
RefSeqNW_927217 [ SRS ]    NW_927217 [ ENTREZ ]
CCDSDYRK1B CCDS - NCBI
AceViewDYRK1B AceView - NCBI
UnigeneHs.130988 [ SRS ]    Hs.130988 [ NCBI ]
Fast-db12053 (alternative variants)
Protein : pattern, domain, 3D structure
SwissProtQ9Y463 [ SRS]    Q9Y463 [ EXPASY ]     Q9Y463 [ INTERPRO ]     Q9Y463 [ UNIPROT ] Q9Y463 [ VarSplice FASTA ]
PrositePS00107 PROTEIN_KINASE_ATP [ SRS ]    PS00107 PROTEIN_KINASE_ATP [ Expasy ]
PrositePS50011 PROTEIN_KINASE_DOM [ SRS ]    PS50011 PROTEIN_KINASE_DOM [ Expasy ]
PrositePS00108 PROTEIN_KINASE_ST [ SRS ]    PS00108 PROTEIN_KINASE_ST [ Expasy ]
InterproIPR000719 Prot_kinase_core [ SRS ]    IPR000719 Prot_kinase_core [ EBI ]
InterproIPR017441 Protein_kinase_ATP_bd_CS [ SRS ]    IPR017441 Protein_kinase_ATP_bd_CS [ EBI ]
InterproIPR017442 Se/Thr_pkinase-rel [ SRS ]    IPR017442 Se/Thr_pkinase-rel [ EBI ]
InterproIPR008271 Ser_thr_pkin_AS [ SRS ]    IPR008271 Ser_thr_pkin_AS [ EBI ]
InterproIPR002290 Ser_thr_pkinase [ SRS ]    IPR002290 Ser_thr_pkinase [ EBI ]
CluSTrQ9Y463
PfamPF00069 Pkinase [ SRS ]    PF00069 Pkinase [ Sanger ]    pfam00069 [ NCBI-CDD ]
SmartSM00220 S_TKc [EMBL]
ProdomPD000001 Prot_kinase[INRA-Toulouse]
ProdomQ9Y463 DYR1B_HUMAN [ Domain structure ]   Q9Y463 DYR1B_HUMAN  [ sequences sharing at least 1 domain ]
BlocksQ9Y463
HPRD05188
Protein Interaction databases
DIPQ9Y463
IntActQ9Y463
Polymorphism : SNP, mutations, diseases
OMIM604556    [ map ]   
GENETests604556
SNPDYRK1B [dbSNP-NCBI]  
SNPNM_004714 [SNP-NCI]  
SNPNM_006483 [SNP-NCI]  
SNPNM_006484 [SNP-NCI]  
SNPDYRK1B [GeneSNPs - Utah]  DYRK1B] [HGBASE - SRS]
HAPMAPDYRK1B [HAPMAP]  
COSMICDYRK1B [Somatic mutation (COSMIC-CGP-Sanger)]  
HGMDDYRK1B
Genetic AssociationDYRK1B
CDC HuGEDYRK1B
General knowledge
Family BrowserDYRK1B [UCSC Family Browser]
SOURCENM_004714
SOURCENM_006483
SOURCENM_006484
SMDHs.130988
SAGEHs.130988
Enzyme2.7.12.1 [ Enzyme-Expasy ]   2.7.12.1 [ Enzyme-SRS ]   2.7.12.1 [ IntEnz-EBI ]   2.7.12.1 [ BRENDA ]   2.7.12.1 [ KEGG ]   
GOnucleotide binding [Amigo]  nucleotide binding
GOtranscription coactivator activity [Amigo]  transcription coactivator activity
GOprotein serine/threonine kinase activity [Amigo]  protein serine/threonine kinase activity
GOprotein tyrosine kinase activity [Amigo]  protein tyrosine kinase activity
GOprotein binding [Amigo]  protein binding
GOATP binding [Amigo]  ATP binding
GOnucleus [Amigo]  nucleus
GOprotein amino acid phosphorylation [Amigo]  protein amino acid phosphorylation
GOtransferase activity [Amigo]  transferase activity
GOpositive regulation of transcription, DNA-dependent [Amigo]  positive regulation of transcription, DNA-dependent
PubGeneDYRK1B
TreeFamDYRK1B
CTD9149 [Comparative ToxicoGenomics Database]
Other databases
Probes
ProbeDYRK1B Related clones (RZPD - Berlin)
PubMed
PubMed16 Pubmed reference(s) in Entrez

Bibliography

Mirk protein kinase is a mitogen-activated protein kinase substrate that mediates survival of colon cancer cells.
Lee K, Deng X, Friedman E.
Cancer Res. 2000 Jul 1;60(13):3631-7.
PMID 10910078
 
Mirk/dyrk1B is a Rho-induced kinase active in skeletal muscle differentiation.
Deng X, Ewton DZ, Pawlikowski B, Maimone M, Friedman E.
J Biol Chem. 2003 Oct 17;278(42):41347-54.
PMID 12902328
 
The kinase Mirk/Dyrk1B mediates cell survival in pancreatic ductal adenocarcinoma.
Deng X, Ewton DZ, Li S, Naqvi A, Mercer SE, Landas S, Friedman E.
Cancer Res. 2006 Apr 15;66(8):4149-58.
PMID 16618736
 
Mirk/Dyrk1b mediates cell survival in rhabdomyosarcomas.
Mercer SE, Ewton DZ, Shah S, Naqvi A, Friedman E.
Cancer Res. 2006 May 15;66(10):5143-50.
PMID 16707437
 
The survival kinase Mirk/Dyrk1B is a downstream effector of oncogenic K-ras in pancreatic cancer.
Jin K, Park S, Ewton DZ, Friedman E.
Cancer Res. 2007 Aug 1;67(15):7247-55.
PMID 17671193
 
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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Contributor(s)

Written05-2008Eileen Friedman
Upstate Medical University, State University of New York, Syracuse, New York 13210, USA

Citation

This paper should be referenced as such :
Friedman E . DYRK1B (dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1B). Atlas Genet Cytogenet Oncol Haematol. May 2008 .
URL : http://AtlasGeneticsOncology.org/Genes/DYRK1BID43235ch19q13.html

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 27 13:22:01 2008


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