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DYRK1B (dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1B)

Identity

Other namesMIRK
HGNC (Hugo) DYRK1B
Location 19q13.2
Location_base_pair Starts at 45007830 and ends at 45016681 bp from pter ( according to hg18-Mar_2006)  [Mapping]

DNA/RNA

Description 11 exons and 10 introns encompassing 8.8kb.
Transcription Start at exon 1 encodes major active form p69, with alternative splicing in exon 9 giving rise to kinase inactive p62, and with alternative splicing within intron 1-2 giving rise to p75 in skeletal muscle.
Pseudogene None reported

Protein

Note Serine/threonine kinase activated by intramolecular phosphorylation on tyrosine.
Description 629 amino acids.
Expression Widely expressed at low levels, with elevated expression in muscle and testis.
Function Mediates myoblast differentiation.

Mutations

Note None in SW480 colon cancer cells, none reported.

Implicated in

Entity Ductal adenocarcinoma of the pancreas
Note Active kinase in pancreatic cancer cell lines.
Disease Present in 89% of cases by immunocytochemistry (25 of 28 cases)
Cytogenetics 19q13 amplicon in 10% of cases
Hybrid/Mutated Gene None reported
Abnormal Protein None reported
Oncogenesis Embryonic knockout is viable and has no reported phenotype
  
Entity Rhabdomyosarcoma
Note Overexpressed in 12 of 16 cases; active kinase in rhabdomyosarcoma cell lines
  

Breakpoints

Note None reported

External links

Nomenclature
HGNC (Hugo)DYRK1B   3092
Entrez_Gene (NCBI)DYRK1B  9149  dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1B
Cards
AtlasDYRK1BID43235ch19q13
GeneCards (Weizmann)DYRK1B
Ensembl (Hinxton)ENSG00000105204 [Gene_View]  DYRK1B [Vega]
AceView (NCBI)DYRK1B
Genatlas (Paris)DYRK1B
euGene (Indiana)9149
SOURCE (Stanford)NM_004714 NM_006483 NM_006484
Gene Expression (Array Express) ENSG00000105204
Genomic and cartography
GoldenPath (UCSC)DYRK1B  -  19q13.2   chr19:45007830-45016681 -  19q12-q13.1   [Description]    (hg18-Mar_2006)
EnsemblDYRK1B - 19q12-q13.1 [CytoView]
Mapping of homologs : NCBIDYRK1B [Mapview]
OMIM604556   
Gene and transcription
Gene : Genbank (Entrez)AF205861 AK074971 AK302127 BC009688 BC018751
Reference sequence (RefSeq transcript) :SRSNM_004714 NM_006483 NM_006484
Reference transcript : EntrezNM_004714 NM_006483 NM_006484
RefSeq genomic : SRSAC_000062 AC_000151 NC_000019 NT_011109 NW_001838496 NW_927217
RefSeq genomic : EntrezAC_000062 AC_000151 NC_000019 NT_011109 NW_001838496 NW_927217
Consensus coding sequences : CCDS NCBIDYRK1B
Cluster EST : UnigeneHs.130988 [ SRS ] Hs.130988 [ NCBI ]
Alternative Splicing : Fast-db (Paris)12053
Protein : pattern, domain, 3D structure
Protein : UniProt/SwissProtQ9Y463 (SRS) Q9Y463 (Expasy) Q9Y463 (Uniprot)
With graphics : InterProQ9Y463
Splice isoforms : VarSplice FASTAQ9Y463(VarSplice FASTA)
Domaine pattern : Prosite (SRS)PROTEIN_KINASE_ATP (PS00107)    PROTEIN_KINASE_DOM (PS50011)    PROTEIN_KINASE_ST (PS00108)   
Domain pattern : Prosite (Expaxy)PROTEIN_KINASE_ATP (PS00107)    PROTEIN_KINASE_DOM (PS50011)    PROTEIN_KINASE_ST (PS00108)   
Domains : Interpro (SRS)Kinase-like_dom    Prot_kinase_cat_dom    Protein_kinase_ATP_BS    Se/Thr_prot_kinase-like_dom    Ser/Thr_prot_kinase_AS    Ser/Thr_prot_kinase_dom   
Domains : Interpro (EBI)Kinase-like_dom    Prot_kinase_cat_dom    Protein_kinase_ATP_BS    Se/Thr_prot_kinase-like_dom    Ser/Thr_prot_kinase_AS    Ser/Thr_prot_kinase_dom   
Related proteins : CluSTrQ9Y463
Domain families : Pfam SRSPkinase (PF00069)   
Domain families : Pfam SangerPkinase (PF00069)   
Domain families : Pfam NCBIpfam00069   
Domain families : Smart EMBLS_TKc (SM00220)  
Blocks (Seattle)Q9Y463
Crystal structure of protein : PDB SRS
Crystal structure of protein : PDBSum
Crystal structure of protein : IMB
Crystal structure of protein : PDB RSDB
HPRD05188
Protein Interaction databases
DIP (DOE-UCLA)Q9Y463
IntAct (EBI)Q9Y463
Polymorphism : SNP, mutations, diseases
Single Nucleotide Polymorphism (SNP) : dbSNP NCBIDYRK1B
SNP : GeneSNP UtahDYRK1B
SNP : HGBaseDYRK1B
Genetic variants : HAPMAPDYRK1B
Somatic Mutations in Cancer : COSMICDYRK1B 
Mutations and Diseases : HGMDDYRK1B
Hereditary diseases : OMIM604556   
Hereditary diseases : GENETests604556   
Diseases : Genetic AssociationDYRK1B
General knowledge
Homologs : HomoloGeneDYRK1B
Homology/Alignments : Family Browser UCSCDYRK1B
Phylogenetic Trees/Animal Genes : TreeFamDYRK1B
Catalytic activity : Enzyme2.7.12.1 [ Enzyme-Expasy ]   2.7.12.1 [ Enzyme-SRS ]   2.7.12.1 [ IntEnz-EBI ]   2.7.12.1 [ BRENDA ]   2.7.12.1 [ KEGG ]   
Chemical/Protein Interactions : CTD9149
Keywords Ontology : AmiGOnucleotide binding  transcription coactivator activity  protein serine/threonine kinase activity  protein tyrosine kinase activity  protein binding  ATP binding  nucleus  protein amino acid phosphorylation  myoblast fusion  transferase activity  positive regulation of transcription, DNA-dependent  
Keywords Ontology : EGO-EBInucleotide binding  transcription coactivator activity  protein serine/threonine kinase activity  protein tyrosine kinase activity  protein binding  ATP binding  nucleus  protein amino acid phosphorylation  myoblast fusion  transferase activity  positive regulation of transcription, DNA-dependent  
Pathways : BIOCARTA
Pathways : KEGG
Other databases
Probes
Probes : ImagenesDYRK1B Related clones (RZPD - Berlin)
Literature
PubMed18 Pubmed reference(s) in Entrez
PubGeneDYRK1B

Bibliography

Mirk protein kinase is a mitogen-activated protein kinase substrate that mediates survival of colon cancer cells.
Lee K, Deng X, Friedman E.
Cancer Res. 2000 Jul 1;60(13):3631-7.
PMID 10910078
 
Mirk/dyrk1B is a Rho-induced kinase active in skeletal muscle differentiation.
Deng X, Ewton DZ, Pawlikowski B, Maimone M, Friedman E.
J Biol Chem. 2003 Oct 17;278(42):41347-54.
PMID 12902328
 
The kinase Mirk/Dyrk1B mediates cell survival in pancreatic ductal adenocarcinoma.
Deng X, Ewton DZ, Li S, Naqvi A, Mercer SE, Landas S, Friedman E.
Cancer Res. 2006 Apr 15;66(8):4149-58.
PMID 16618736
 
Mirk/Dyrk1b mediates cell survival in rhabdomyosarcomas.
Mercer SE, Ewton DZ, Shah S, Naqvi A, Friedman E.
Cancer Res. 2006 May 15;66(10):5143-50.
PMID 16707437
 
The survival kinase Mirk/Dyrk1B is a downstream effector of oncogenic K-ras in pancreatic cancer.
Jin K, Park S, Ewton DZ, Friedman E.
Cancer Res. 2007 Aug 1;67(15):7247-55.
PMID 17671193
 
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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Contributor(s)

Written05-2008Eileen Friedman
Upstate Medical University, State University of New York, Syracuse, New York 13210, USA

Citation

This paper should be referenced as such :
Friedman E . DYRK1B (dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1B). Atlas Genet Cytogenet Oncol Haematol. May 2008 .
URL : http://AtlasGeneticsOncology.org/Genes/DYRK1BID43235ch19q13.html

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indexed on : Sat Feb 27 10:54:54 CET 2010

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