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DAB2IP (DAB2 interacting protein)

Identity

Other namesAF9q34
DIP1/2,
KIAA1743
Hugo DAB2IP
Location 9q34
Note centromeric of ABL

DNA/RNA

Description 14 exons stretched over an area of about 84 kb. Exon 1, a noncoding exon, has (at least) three variants.
Transcription in a centromere to telomere direction 5192 bp mRNA; 2903 bp open reading frame.

Protein

Description The AF9q34 protein contains a GAP related domain (GRD), an 'FLR'-motif, a Pleckstrin homology (PH) domain and a calcium/phospho-lipid-binding C2/CALB domain; 967 amino acids.
Expression Expression in all human tissues with a relatively low level of expression in testis, placenta, spleen and peripheral blood leukocytes.
Function RasGAPs negatively regulate the activity of Ras proteins that modulate diverse cellular processes by cycling between the inactive GDP-bound and active GTP-bound state. DAB2 interacting protein.
Homology Homologous to human nGAP (or RAS protein activator like 2 (RASAL2)).

Implicated in

Entity t(9;11)(q34;q23) AML --> MLL-AF9q34
Note Another t(9;11)(q34;q23) AML has been reported with involvement of MLL-FBP17.
Disease Only one case to date, a 62 yr old male patient with Acute Myeloid Leukemia (M5).
Cytogenetics The case was 46, XY, t(9;11)(q34;q23) and in 40% of the metaphases additional chromosomes 8 and 13 were observed.
 
Schematic representation of MLL, AF9q34, and the putative MLL-AF9q34 fusion protein.
Domains in MLL and AF9q34 are shaded: AT, AT-hook DNA binding motifs; SNL1 and SNL2, speckled nuclear localisation signals 1 and 2; CxxC, cysteine rich motif homologous to DNA methyltransferase (MT); PHD, plant homeodomain fingers; FYRN, FYRN domain; FYRC. FYRC domain; SET, SET domain; PH, Pleckstrin Homology Domain; GRD, GAP Related Domain. Arrows indicate the breakpoint (bp) sites in MLL and AF9q34.
Hybrid/Mutated Gene 5' MLL fused at exon 9 with the 3' end of AFq34.
Abnormal Protein The MLL-AF9q34 protein includes the entire GAP related domain (GRD) and the C2/CALB domain, but the PH domain is disrupted by the breakpoint in AF9q34.
  

External links

Nomenclature
HugoDAB2IP
GDBDAB2IP
Entrez_GeneDAB2IP  153090  DAB2 interacting protein
Cards
AtlasAF9q34ID316
GeneCardsDAB2IP
EnsemblDAB2IP [Search_View]   ENSG00000136848 [Gene_View]
GenatlasDAB2IP
GeneLynxDAB2IP
eGenomeDAB2IP
euGene153090
Genomic and cartography
GoldenPathDAB2IP  -  9q34   chr9:123544885-123584752 +  9q33.1-q33.3   [Description]    (hg18-Mar_2006)
EnsemblDAB2IP - 9q33.1-q33.3 [CytoView]
NCBIMapview
OMIMDisease map [OMIM]
HomoloGeneDAB2IP
Gene and transcription
GenbankAB051530 [ ENTREZ ]
GenbankAF367051 [ ENTREZ ]
GenbankAK054851 [ ENTREZ ]
GenbankAK096391 [ ENTREZ ]
GenbankAK124609 [ ENTREZ ]
RefSeqNM_032552 [ SRS ]    NM_032552 [ ENTREZ ]
RefSeqNM_138709 [ SRS ]    NM_138709 [ ENTREZ ]
RefSeqAC_000052 [ SRS ]    AC_000052 [ ENTREZ ]
RefSeqNC_000009 [ SRS ]    NC_000009 [ ENTREZ ]
RefSeqNT_008470 [ SRS ]    NT_008470 [ ENTREZ ]
RefSeqNW_924573 [ SRS ]    NW_924573 [ ENTREZ ]
AceViewDAB2IP AceView - NCBI
UnigeneHs.522378 [ SRS ]    Hs.522378 [ NCBI ]     HS522378 [ spliceNest ]
Fast-db14396 (alternative variants)
Protein : pattern, domain, 3D structure
SwissProtQ5VWQ8 [ SRS]    Q5VWQ8 [ EXPASY ]     Q5VWQ8 [ INTERPRO ]
PrositePS50004 C2 [ SRS ]    PS50004 C2 [ Expasy ]
PrositePS50003 PH_DOMAIN [ SRS ]    PS50003 PH_DOMAIN [ Expasy ]
PrositePS00509 RAS_GTPASE_ACTIV_1 [ SRS ]    PS00509 RAS_GTPASE_ACTIV_1 [ Expasy ]
PrositePS50018 RAS_GTPASE_ACTIV_2 [ SRS ]    PS50018 RAS_GTPASE_ACTIV_2 [ Expasy ]
InterproIPR000008 C2_Ca-dep [ SRS ]    IPR000008 C2_Ca-dep [ EBI ]
InterproIPR001849 PH [ SRS ]    IPR001849 PH [ EBI ]
InterproIPR001936 RasGAP [ SRS ]    IPR001936 RasGAP [ EBI ]
CluSTrQ5VWQ8
PfamPF00168 C2 [ SRS ]    PF00168 C2 [ Sanger ]    pfam00168 [ NCBI-CDD ]
PfamPF00169 PH [ SRS ]    PF00169 PH [ Sanger ]    pfam00169 [ NCBI-CDD ]
PfamPF00616 RasGAP [ SRS ]    PF00616 RasGAP [ Sanger ]    pfam00616 [ NCBI-CDD ]
SmartSM00239 C2 [EMBL]
SmartSM00233 PH [EMBL]
SmartSM00323 RasGAP [EMBL]
BlocksQ5VWQ8
HPRD09903
Protein Interaction databases
DIPQ5VWQ8
IntActQ5VWQ8
Polymorphism : SNP, mutations, diseases
OMIM609205    [ map ]   
GENECLINICS609205
SNPDAB2IP [dbSNP-NCBI]  
SNPNM_032552 [SNP-NCI]  
SNPNM_138709 [SNP-NCI]  
SNPDAB2IP [GeneSNPs - Utah]  DAB2IP] [HGBASE - SRS]
HAPMAPDAB2IP [HAPMAP]  
TICdbDAB2IP [Translocation breakpoints In Cancer]  
HGMDDAB2IP
General knowledge
Family BrowserDAB2IP [UCSC Family Browser]
SOURCENM_032552
SOURCENM_138709
SMDHs.522378
SAGEHs.522378
GOGTPase activator activity [Amigo]  GTPase activator activity
GOintracellular [Amigo]  intracellular
GOcytoplasm [Amigo]  cytoplasm
GOcell cycle [Amigo]  cell cycle
GOsignal transduction [Amigo]  signal transduction
GOmembrane [Amigo]  membrane
GOnegative regulation of cell cycle [Amigo]  negative regulation of cell cycle
GOregulation of small GTPase mediated signal transduction [Amigo]  regulation of small GTPase mediated signal transduction
PubGeneDAB2IP
TreeFamDAB2IP
CTD153090 [Comparative ToxicoGenomics Database]
Other databases
Probes
Probeclones RP6-10F14 and RP6-105L9
ProbeDAB2IP Related clones (RZPD - Berlin)
PubMed
PubMed17 Pubmed reference(s) in LocusLink

Bibliography

Cloning of unknown MLL fusion transcripts identifies two novel MLL fusion partners.
von Bergh A, Beverloo B, Slater R, Groot A, Rombout P, Kluin P, Schuuring E
Blood. 2000 ; 96 (numero Suppl 1).
 
Differential regulation of the human gene DAB2IP in normal and malignant prostatic epithelia: cloning and characterization.
Chen H, Pong RC, Wang Z, Hsieh JT
Genomics. 2002 ; 79 (4) : 573-581.
PMID 11944990
 
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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Contributor(s)

Written08-2003Anne RM von Bergh

Citation

This paper should be referenced as such :
von Bergh ARM . DAB2IP (DAB2 interacting protein). Atlas Genet Cytogenet Oncol Haematol. August 2003 .
URL : http://AtlasGeneticsOncology.org/Genes/AF9q34ID316.html

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jul 2 08:21:39 2008


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