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CD109 (CD109 molecule)

Identity

Other namesCPAMD7
DKFZp762L1111
FLJ38569
FLJ41966
RP11-525G3.1
HGNC (Hugo) CD109
LocusID (NCBI) 135228
Location 6q13
Location_base_pair Starts at 74405508 and ends at 74538041 bp from pter ( according to hg19-Feb_2009)  [Mapping]
Note CD109 is a glycosylphosphatidylinositol (GPI)-anchored cell-surface glycoprotein and is a member of the alpha-2-macroglobulin/C3,C4,C5 family of thioester-containing proteins.

DNA/RNA

 
  Exon-intron structure of CD109 gene. The vertical bars correspond to exons.
Description CD109 is a gene of 132.53 kb comprising 33 exons and 32 introns. The 5' part of exon 1 and the 3' part of exon 33 are non-coding.
Transcription Three splice variants are known. The length of the longest variant is 9464 bp (CDS: 426-4763). mRNA is mainly expressed in skin and testis.
Pseudogene Not known.

Protein

 
  Representation of the CD109 protein with localization of recognized domains. CD109 protein is a GPI-anchored protein having signal peptide, Gov antigen, thioester region, and furinase cleavage site.
Description CD109 is a GPI-anchored cell-surface glycoprotein and is a member of the alpha-2-macroglobulin/C3,C4,C5 family of thioester-containing proteins (Sutherland et al., 1991; Haregewoin et al., 1994; Smith et al., 1995; Lin et al., 2002). The CD109 protein was first identified as a cell-surface antigen detected by a monoclonal antibody raised against the primitive lymphoid/myeloid cell line KG1a (Sutherland et al., 1991). It was also shown that CD109 carries the biallelic platelet-specific alloantigen Gov (Kelton et al., 1990; Smith et al., 1995).
Expression CD109 is expressed on a subset of fetal and adult CD34+ bone marrow mononuclear cells, mesenchymal stem cell subsets, phytohemagglutinin (PHA)-activated T lymphoblasts, thrombin-activated platelets, leukemic megakaryoblasts, endothelial cells, and some human tumor cell lines, but not on fresh peripheral leukocytes and normal bone marrow leukocytes (Kelton et al., 1990; Murray et al., 1999; Giesert et al., 2003).
In normal human tissues other than hematopoietic cells, CD109 is expressed in limited cells including the myoepithelial cells of the mammary, lacrimal, salivary and bronchial glands and the basal cells of the prostate and the bronchial epithelia (Hashimoto et al., 2004; Zhang et al., 2005; Sato et al., 2007; Hasegawa et al., 2007; Hasegawa et al., 2008).
Recently, it has been reported that CD109 is highly expressed in several types of human cancer tissues, in particular squamous cell carcinomas (Hashimoto et al., 2004; Zhang et al., 2005; Sato et al., 2007; Hasegawa et al., 2007; Hasegawa et al., 2008; Järvinen et al., 2008; Hagiwara et al., 2008; Ohshima et al., 2010; Hagikura et al., 2010).
Localisation Plasma membrane.
Function CD109 negatively regulates TGF-beta signaling in keratinocytes by directly modulating TGF-beta receptor activity in vitro (Finnson et al., 2006).
Homology Orthologs: mouse CD109, rat CD109, cow CD109, dog CD109, chicken CD109, hagfish CD109, nematode CD109.
Paralogs: alpha-2-macroglobulin, alpha-2-macroglobulin-like-1, C3, C4, C5, PZP, CPAMD8.

Mutations

Note A Tyr703Ser polymorphism of CD109 is associated with Gova and Govb alloantigenic determination (Schuh et al., 2002).

Implicated in

Entity Various cancer
Note CD109 is upregulated in squamous cell carcinomas (SCCs) of lung, esophagus, uterus and oral cavity, malignant melanoma of skin, and urothelial carcinoma of urinary bladder (Hashimoto et al., 2004; Zhang et al., 2005; Sato et al., 2007; Hasegawa et al., 2007; Hasegawa et al., 2008; Järvinen et al., 2008; Hagiwara et al., 2008; Ohshima et al., 2010; Hagikura et al., 2010).
Prognosis The CD109 expression is significantly higher in well-differentiated SCCs of the oral cavity and in low-grade urothelial carcinomas of the urinary bladder than in moderately- or poorly-differentiated SCCs and in high-grade urothelial carcinomas, respectively (Hagiwara et al., 2008; Hagikura et al., 2010).
  
Entity Alloimmune thrombocytopenic syndromes
Note Refractoriness to platelet transfusion, post-transfusion purpura, and neonatal alloimmune thrombocytopenia (Smith et al., 1995).
Disease These diseases are included in alloimmune thrombocytopenic syndromes. Gova/b platelet alloantigens, which reside in the CD109 protein, are the cause of these 3 diseases.
  

External links

Nomenclature
HGNC (Hugo)CD109   21685
Entrez_Gene (NCBI)CD109  135228  CD109 molecule
Cards
AtlasCD109ID42925ch6q13
GeneCards (Weizmann)CD109
Ensembl (Hinxton)ENSG00000156535 [Gene_View]  chr6:74405508-74538041 [Contig_View]  CD109 [Vega]
AceView (NCBI)CD109
Genatlas (Paris)CD109
SOURCE (Stanford)NM_001159587 NM_001159588 NM_133493
Genomic and cartography
GoldenPath (UCSC)CD109  -  6q13   chr6:74405508-74538041 +  6q14.1   [Description]    (hg19-Feb_2009)
EnsemblCD109 - 6q14.1 [CytoView]
Mapping of homologs : NCBICD109 [Mapview]
OMIM608859   
Gene and transcription
Genbank (Entrez)AF410459 AK095888 AK123960 AK130104 AK313636
RefSeq transcript (SRS)NM_001159587 NM_001159588 NM_133493
RefSeq transcript (Entrez)NM_001159587 NM_001159588 NM_133493
RefSeq genomic (SRS)AC_000138 NC_000006 NC_018917 NT_007299 NW_001838987 NW_004078027
RefSeq genomic (Entrez)AC_000138 NC_000006 NC_018917 NT_007299 NW_001838987 NW_004078027
Consensus coding sequences : CCDS (NCBI)CD109
Cluster EST : UnigeneHs.399891 [ SRS ] Hs.399891 [ NCBI ]
CGAP (NCI)Hs.399891
Alternative Splicing GalleryENSG00000156535
Gene ExpressionCD109 [ NCBI-GEO ]   CD109 [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6YHK3 (SRS) Q6YHK3 (Uniprot)
NextProtQ6YHK3
With graphics : InterProQ6YHK3
Splice isoforms : SwissVarQ6YHK3(Swissvar)
Domaine pattern : Prosite (SRS)ALPHA_2_MACROGLOBULIN (PS00477)   
Domaine pattern : Prosite (Expaxy)ALPHA_2_MACROGLOBULIN (PS00477)   
Domains : Interpro (SRS)A-macroglobulin_rcpt-bd    A2M_comp    A2M_N    A2M_N_2    Macroglobln_a2    MacrogloblnA2_CS    MacrogloblnA2_thiol-ester-bond    Terpenoid_cyclase/PrenylTrfase   
Domains : Interpro (EBI)A-macroglobulin_rcpt-bd    A2M_comp    A2M_N    A2M_N_2    Macroglobln_a2    MacrogloblnA2_CS    MacrogloblnA2_thiol-ester-bond    Terpenoid_cyclase/PrenylTrfase   
Related proteins : CluSTrQ6YHK3
Domain families : Pfam (SRS)A2M (PF00207)    A2M_comp (PF07678)    A2M_N (PF01835)    A2M_N_2 (PF07703)    A2M_recep (PF07677)    Thiol-ester_cl (PF10569)   
Domain families : Pfam (Sanger)A2M (PF00207)    A2M_comp (PF07678)    A2M_N (PF01835)    A2M_N_2 (PF07703)    A2M_recep (PF07677)    Thiol-ester_cl (PF10569)   
Domain families : Pfam (NCBI)pfam00207    pfam07678    pfam01835    pfam07703    pfam07677    pfam10569   
DMDM135228
Blocks (Seattle)Q6YHK3
Human Protein AtlasENSG00000156535
HPRD10590
IPIIPI00152540   IPI00788676   IPI00795327   IPI00795801   
Protein Interaction databases
DIP (DOE-UCLA)Q6YHK3
IntAct (EBI)Q6YHK3
FunCoupENSG00000156535
REACTOMECD109
Protein Interaction Database135228
BioGRIDCD109
InParanoidQ6YHK3
Interologous Interaction database Q6YHK3
IntegromeDBCD109
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)CD109
SNP (GeneSNP Utah)CD109
SNP : HGBaseCD109
Genetic variants : HAPMAPCD109
Somatic Mutations in Cancer : COSMICCD109 
CONAN: Copy Number AnalysisCD109 
Mutations and Diseases : HGMDCD109
OMIM608859   
GENETests608859   
Disease Genetic AssociationCD109
Huge Navigator CD109 [HugePedia]  CD109 [HugeCancerGEM]
Genomic VariantsCD109  CD109 [DGVbeta]
snp3D : Map Gene to Disease135228
General knowledge
Homologs : HomoloGeneCD109
Homology/Alignments : Family Browser (UCSC)CD109
Phylogenetic Trees/Animal Genes : TreeFamCD109
Chemical/Protein Interactions : CTD135228
Chemical/Pharm GKB GenePA134949237
Clinical trialCD109
Cancer Resource (Charite)ENSG00000156535
Ontology : AmiGOserine-type endopeptidase inhibitor activity  extracellular space  plasma membrane  anchored to membrane  
Ontology : EGO-EBIserine-type endopeptidase inhibitor activity  extracellular space  plasma membrane  anchored to membrane  
Other databases
Probes
Litterature
PubMed34 Pubmed reference(s) in Entrez
PubGeneCD109
iHOPCD109

Bibliography

Gova/b alloantigen system on human platelets.
Kelton JG, Smith JW, Horsewood P, Humbert JR, Hayward CP, Warkentin TE.
Blood. 1990 Jun 1;75(11):2172-6.
PMID 2346781
 
Identification of a cell-surface antigen associated with activated T lymphoblasts and activated platelets.
Sutherland DR, Yeo E, Ryan A, Mills GB, Bailey D, Baker MA.
Blood. 1991 Jan 1;77(1):84-93.
PMID 1984805
 
Cellular expression of a GPI-linked T cell activation protein.
Haregewoin A, Solomon K, Hom RC, Soman G, Bergelson JM, Bhan AK, Finberg RW.
Cell Immunol. 1994 Jul;156(2):357-70.
PMID 8025953
 
Characterization and localization of the Gova/b alloantigens to the glycosylphosphatidylinositol-anchored protein CDw109 on human platelets.
Smith JW, Hayward CP, Horsewood P, Warkentin TE, Denomme GA, Kelton JG.
Blood. 1995 Oct 1;86(7):2807-14.
PMID 7670116
 
CD109 is expressed on a subpopulation of CD34+ cells enriched in hematopoietic stem and progenitor cells.
Murray LJ, Bruno E, Uchida N, Hoffman R, Nayar R, Yeo EL, Schuh AC, Sutherland DR.
Exp Hematol. 1999 Aug;27(8):1282-94.
PMID 10428505
 
Cell surface antigen CD109 is a novel member of the alpha(2) macroglobulin/C3, C4, C5 family of thioester-containing proteins.
Lin M, Sutherland DR, Horsfall W, Totty N, Yeo E, Nayar R, Wu XF, Schuh AC.
Blood. 2002 Mar 1;99(5):1683-91.
PMID 11861284
 
A tyrosine703serine polymorphism of CD109 defines the Gov platelet alloantigens.
Schuh AC, Watkins NA, Nguyen Q, Harmer NJ, Lin M, Prosper JY, Campbell K, Sutherland DR, Metcalfe P, Horsfall W, Ouwehand WH.
Blood. 2002 Mar 1;99(5):1692-8.
PMID 11861285
 
Antibody W7C5 defines a CD109 epitope expressed on CD34+ and CD34- hematopoietic and mesenchymal stem cell subsets.
Giesert C, Marxer A, Sutherland DR, Schuh AC, Kanz L, Buhring HJ.
Ann N Y Acad Sci. 2003 May;996:227-30.
PMID 12799300
 
Expression of CD109 in human cancer.
Hashimoto M, Ichihara M, Watanabe T, Kawai K, Koshikawa K, Yuasa N, Takahashi T, Yatabe Y, Murakumo Y, Zhang JM, Nimura Y, Takahashi M.
Oncogene. 2004 Apr 29;23(20):3716-20.
PMID 15116102
 
CD109 expression in squamous cell carcinoma of the uterine cervix.
Zhang JM, Hashimoto M, Kawai K, Murakumo Y, Sato T, Ichihara M, Nakamura S, Takahashi M.
Pathol Int. 2005 Apr;55(4):165-9.
PMID 15826242
 
Identification of CD109 as part of the TGF-beta receptor system in human keratinocytes.
Finnson KW, Tam BY, Liu K, Marcoux A, Lepage P, Roy S, Bizet AA, Philip A.
FASEB J. 2006 Jul;20(9):1525-7. Epub 2006 Jun 5.
PMID 16754747
 
CD109, a new marker for myoepithelial cells of mammary, salivary, and lacrimal glands and prostate basal cells.
Hasegawa M, Hagiwara S, Sato T, Jijiwa M, Murakumo Y, Maeda M, Moritani S, Ichihara S, Takahashi M.
Pathol Int. 2007 May;57(5):245-50.
PMID 17493171
 
High-level expression of CD109 is frequently detected in lung squamous cell carcinomas.
Sato T, Murakumo Y, Hagiwara S, Jijiwa M, Suzuki C, Yatabe Y, Takahashi M.
Pathol Int. 2007 Nov;57(11):719-24.
PMID 17922683
 
CD109 expression in basal-like breast carcinoma.
Hasegawa M, Moritani S, Murakumo Y, Sato T, Hagiwara S, Suzuki C, Mii S, Jijiwa M, Enomoto A, Asai N, Ichihara S, Takahashi M.
Pathol Int. 2008 May;58(5):288-94.
PMID 18429827
 
Up-regulation of CD109 expression is associated with carcinogenesis of the squamous epithelium of the oral cavity.
Hagiwara S, Murakumo Y, Sato T, Shigetomi T, Mitsudo K, Tohnai I, Ueda M, Takahashi M.
Cancer Sci. 2008 Oct;99(10):1916-23.
PMID 19016750
 
High-resolution copy number and gene expression microarray analyses of head and neck squamous cell carcinoma cell lines of tongue and larynx.
Jarvinen AK, Autio R, Kilpinen S, Saarela M, Leivo I, Grenman R, Makitie AA, Monni O.
Genes Chromosomes Cancer. 2008 Jun;47(6):500-9.
PMID 18314910
 
Correlation of pathological grade and tumor stage of urothelial carcinomas with CD109 expression.
Hagikura M, Murakumo Y, Hasegawa M, Jijiwa M, Hagiwara S, Mii S, Hagikura S, Matsukawa Y, Yoshino Y, Hattori R, Wakai K, Nakamura S, Gotoh M, Takahashi M.
Pathol Int. 2010 Nov;60(11):735-43. doi: 10.1111/j.1440-1827.2010.02592.x. Epub 2010 Oct 6.
PMID 20946523
 
CD109 expression levels in malignant melanoma.
Ohshima Y, Yajima I, Kumasaka MY, Yanagishita T, Watanabe D, Takahashi M, Inoue Y, Ihn H, Matsumoto Y, Kato M.
J Dermatol Sci. 2010 Feb;57(2):140-2. Epub 2010 Jan 7.
PMID 20034764
 
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Contributor(s)

Written08-2011Shinji Mii, Yoshiki Murakumo, Masahide Takahashi
Department of Pathology, Nagoya University Graduate School of Medicine, Nagoya 466-8550, Japan

Citation

This paper should be referenced as such :
Mii S, Murakumo Y, Takahashi M . CD109 (CD109 molecule). Atlas Genet Cytogenet Oncol Haematol. August 2011 .
URL : http://AtlasGeneticsOncology.org/Genes/CD109ID42925ch6q13.html

This paper is referenced by INIST as such :
http://documents.irevues.inist.fr/bitstream/2042/47266/1/08-2011-CD109ID42925ch6q13.pdf   [ Bibliographic record ]

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indexed on : Wed May 1 13:06:14 CEST 2013

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